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183 Publications
2015 | Research Data Reference | IST-REx-ID: 9712
Other fitness models for comparison & for interacting TFBSs
M. Tugrul, T. Paixao, N.H. Barton, G. Tkačik, (2015).
[Published Version]
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M. Tugrul, T. Paixao, N.H. Barton, G. Tkačik, (2015).
2015 | Published | Journal Article | IST-REx-ID: 1539 | 
Minimal moment equations for stochastic models of biochemical reaction networks with partially finite state space
J. Ruess, Journal of Chemical Physics 143 (2015).
[Published Version]
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J. Ruess, Journal of Chemical Physics 143 (2015).
2015 | Published | Conference Paper | IST-REx-ID: 1658
Adaptive moment closure for parameter inference of biochemical reaction networks
S. Bogomolov, T.A. Henzinger, A. Podelski, J. Ruess, C. Schilling, 9308 (2015) 77–89.
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S. Bogomolov, T.A. Henzinger, A. Podelski, J. Ruess, C. Schilling, 9308 (2015) 77–89.
2015 | Published | Journal Article | IST-REx-ID: 1697 |
High accuracy decoding of dynamical motion from a large retinal population
O. Marre, V. Botella Soler, K. Simmons, T. Mora, G. Tkačik, M. Berry, PLoS Computational Biology 11 (2015).
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O. Marre, V. Botella Soler, K. Simmons, T. Mora, G. Tkačik, M. Berry, PLoS Computational Biology 11 (2015).
2015 | Published | Journal Article | IST-REx-ID: 1701 |
Thermodynamics and signatures of criticality in a network of neurons
G. Tkačik, T. Mora, O. Marre, D. Amodei, S. Palmer, M. Berry Ii, W. Bialek, PNAS 112 (2015) 11508–11513.
[Submitted Version]
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| PubMed | Europe PMC
G. Tkačik, T. Mora, O. Marre, D. Amodei, S. Palmer, M. Berry Ii, W. Bialek, PNAS 112 (2015) 11508–11513.
2014 | Published | Journal Article | IST-REx-ID: 537 |
Fitness consequences of maternal and grandmaternal effects
R. Prizak, T. Ezard, R. Hoyle, Ecology and Evolution 4 (2014) 3139–3145.
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R. Prizak, T. Ezard, R. Hoyle, Ecology and Evolution 4 (2014) 3139–3145.
2014 | Published | Journal Article | IST-REx-ID: 1896 |
Mathematical model of alternative mechanism of telomere length maintenance
R. Kollár, K. Bodova, J. Nosek, Ľ. Tomáška, Physical Review E Statistical Nonlinear and Soft Matter Physics 89 (2014).
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R. Kollár, K. Bodova, J. Nosek, Ľ. Tomáška, Physical Review E Statistical Nonlinear and Soft Matter Physics 89 (2014).
2014 | Published | Journal Article | IST-REx-ID: 1909 |
The fitness costs of adaptation via phenotypic plasticity and maternal effects
T. Ezard, R. Prizak, R. Hoyle, Functional Ecology 28 (2014) 693–701.
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T. Ezard, R. Prizak, R. Hoyle, Functional Ecology 28 (2014) 693–701.
2014 | Published | Journal Article | IST-REx-ID: 1928
Evolutionary dynamics of infectious diseases in finite populations
J. Humplik, A. Hill, M. Nowak, Journal of Theoretical Biology 360 (2014) 149–162.
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J. Humplik, A. Hill, M. Nowak, Journal of Theoretical Biology 360 (2014) 149–162.
2014 | Published | Journal Article | IST-REx-ID: 1931 |
Emergence of task-dependent representations in working memory circuits
C. Savin, J. Triesch, Frontiers in Computational Neuroscience 8 (2014).
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C. Savin, J. Triesch, Frontiers in Computational Neuroscience 8 (2014).
2014 | Published | Journal Article | IST-REx-ID: 2028 |
Characterizing spiking in noisy type II neurons
K. Bodova, D. Paydarfar, D. Forger, Journal of Theoretical Biology 365 (2014) 40–54.
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K. Bodova, D. Paydarfar, D. Forger, Journal of Theoretical Biology 365 (2014) 40–54.
2014 | Published | Journal Article | IST-REx-ID: 3263 |
Adaptation to changes in higher-order stimulus statistics in the salamander retina
G. Tkačik, A. Ghosh, E. Schneidman, R. Segev, PLoS One 9 (2014).
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G. Tkačik, A. Ghosh, E. Schneidman, R. Segev, PLoS One 9 (2014).
2014 | Research Data Reference | IST-REx-ID: 9752 |
Data from: Transformation of stimulus correlations by the retina
K. Simmons, J. Prentice, G. Tkačik, J. Homann, H. Yee, S. Palmer, P. Nelson, V. Balasubramanian, (2014).
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K. Simmons, J. Prentice, G. Tkačik, J. Homann, H. Yee, S. Palmer, P. Nelson, V. Balasubramanian, (2014).
2014 | Published | Conference Paper | IST-REx-ID: 1708
Spatio-temporal representations of uncertainty in spiking neural networks
Savin, Cristina, Spatio-temporal representations of uncertainty in spiking neural networks. 3 (January). 2014
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Savin, Cristina, Spatio-temporal representations of uncertainty in spiking neural networks. 3 (January). 2014
2014 | Published | Journal Article | IST-REx-ID: 2231 |
Noise and information transmission in promoters with multiple internal states
Rieckh, Georg, Noise and information transmission in promoters with multiple internal states. Biophysical Journal 106 (5). 2014
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Rieckh, Georg, Noise and information transmission in promoters with multiple internal states. Biophysical Journal 106 (5). 2014
2014 | Published | Journal Article | IST-REx-ID: 2183 |
Hierarchy and polysynchrony in an adaptive network
V. Botella Soler, P. Glendinning, Physical Review E Statistical Nonlinear and Soft Matter Physics 89 (2014).
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V. Botella Soler, P. Glendinning, Physical Review E Statistical Nonlinear and Soft Matter Physics 89 (2014).
2014 | Published | Journal Article | IST-REx-ID: 1886 |
Variance predicts salience in central sensory processing
A. Hermundstad, J. Briguglio, M. Conte, J. Victor, V. Balasubramanian, G. Tkačik, ELife (2014).
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A. Hermundstad, J. Briguglio, M. Conte, J. Victor, V. Balasubramanian, G. Tkačik, ELife (2014).
2014 | Published | Journal Article | IST-REx-ID: 2257 |
Searching for collective behavior in a large network of sensory neurons
Tkacik, Gasper, Searching for collective behavior in a large network of sensory neurons. PLoS Computational Biology 10 (1). 2014
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Tkacik, Gasper, Searching for collective behavior in a large network of sensory neurons. PLoS Computational Biology 10 (1). 2014
2013 | Published | Journal Article | IST-REx-ID: 2277 |
Transformation of stimulus correlations by the retina
K. Simmons, J. Prentice, G. Tkačik, J. Homann, H. Yee, S. Palmer, P. Nelson, V. Balasubramanian, PLoS Computational Biology 9 (2013).
[Published Version]
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K. Simmons, J. Prentice, G. Tkačik, J. Homann, H. Yee, S. Palmer, P. Nelson, V. Balasubramanian, PLoS Computational Biology 9 (2013).
2013 | Published | Journal Article | IST-REx-ID: 2818 |
Learning quadratic receptive fields from neural responses to natural stimuli
K. Rajan, O. Marre, G. Tkačik, Neural Computation 25 (2013) 1661–1692.
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K. Rajan, O. Marre, G. Tkačik, Neural Computation 25 (2013) 1661–1692.