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4387 Publications
2017 | Journal Article | IST-REx-ID: 805
The E2A splice variant E47 regulates the differentiation of projection neurons via p57(KIP2) during cortical development
S. Pfurr, Y. Chu, C. Bohrer, F. Greulich, R.J. Beattie, K. Mammadzada, M. Hils, S. Arnold, V. Taylor, K. Schachtrup, N.H. Uhlenhaut, C. Schachtrup, Development 144 (2017) 3917–3931.
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| DOI
S. Pfurr, Y. Chu, C. Bohrer, F. Greulich, R.J. Beattie, K. Mammadzada, M. Hils, S. Arnold, V. Taylor, K. Schachtrup, N.H. Uhlenhaut, C. Schachtrup, Development 144 (2017) 3917–3931.
2017 | Journal Article | IST-REx-ID: 807 |

Der Springer Compact-Deal – Ein erster Einblick in die Evaluierung einer Offsetting-Vereinbarung
M. Andrae, M. Villányi, Mitteilungen Der Vereinigung Österreichischer Bibliothekarinnen Und Bibliothekare 70 (2017) 274–280.
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M. Andrae, M. Villányi, Mitteilungen Der Vereinigung Österreichischer Bibliothekarinnen Und Bibliothekare 70 (2017) 274–280.
2017 | Thesis | IST-REx-ID: 818 |

Timing, variability and cross-protection in bacteria – insights from dynamic gene expression responses to antibiotics
K. Mitosch, Timing, Variability and Cross-Protection in Bacteria – Insights from Dynamic Gene Expression Responses to Antibiotics, IST Austria, 2017.
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K. Mitosch, Timing, Variability and Cross-Protection in Bacteria – Insights from Dynamic Gene Expression Responses to Antibiotics, IST Austria, 2017.
2017 | Journal Article | IST-REx-ID: 666 |

Noisy response to antibiotic stress predicts subsequent single cell survival in an acidic environment
K. Mitosch, G. Rieckh, M.T. Bollenbach, Cell Systems 4 (2017) 393–403.
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K. Mitosch, G. Rieckh, M.T. Bollenbach, Cell Systems 4 (2017) 393–403.
2017 | Thesis | IST-REx-ID: 819 |

Disease defence in garden ants
C. Pull, Disease Defence in Garden Ants, IST Austria, 2017.
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C. Pull, Disease Defence in Garden Ants, IST Austria, 2017.
2017 | Journal Article | IST-REx-ID: 732 |

Co-founding ant queens prevent disease by performing prophylactic undertaking behaviour
C. Pull, S. Cremer, BMC Evolutionary Biology 17 (2017).
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C. Pull, S. Cremer, BMC Evolutionary Biology 17 (2017).
2017 | Journal Article | IST-REx-ID: 734 |

Deconstructing superorganisms and societies to address big questions in biology
P. Kennedy, G. Baron, B. Qiu, D. Freitak, H. Helantera, E. Hunt, F. Manfredini, T. O’Shea Wheller, S. Patalano, C. Pull, T. Sasaki, D. Taylor, C. Wyatt, S. Sumner, Trends in Ecology and Evolution 32 (2017) 861–872.
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P. Kennedy, G. Baron, B. Qiu, D. Freitak, H. Helantera, E. Hunt, F. Manfredini, T. O’Shea Wheller, S. Patalano, C. Pull, T. Sasaki, D. Taylor, C. Wyatt, S. Sumner, Trends in Ecology and Evolution 32 (2017) 861–872.
2017 | Thesis | IST-REx-ID: 820 |

The lac operon in the wild
F. Jesse, The Lac Operon in the Wild, IST Austria, 2017.
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| DOI
F. Jesse, The Lac Operon in the Wild, IST Austria, 2017.
2017 | Thesis | IST-REx-ID: 821 |

Algorithmic advances in program analysis and their applications
A. Pavlogiannis, Algorithmic Advances in Program Analysis and Their Applications, IST Austria, 2017.
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A. Pavlogiannis, Algorithmic Advances in Program Analysis and Their Applications, IST Austria, 2017.
2017 | Journal Article | IST-REx-ID: 822 |

Interaction networks, ecological stability, and collective antibiotic tolerance in polymicrobial infections
M. de Vos, M.P. Zagórski, A. Mcnally, M.T. Bollenbach, PNAS 114 (2017) 10666–10671.
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| PubMed | Europe PMC
M. de Vos, M.P. Zagórski, A. Mcnally, M.T. Bollenbach, PNAS 114 (2017) 10666–10671.
2017 | Journal Article | IST-REx-ID: 823 |

Phase transitions in integer linear problems
S. Colabrese, D. De Martino, L. Leuzzi, E. Marinari, Journal of Statistical Mechanics: Theory and Experiment 2017 (2017).
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S. Colabrese, D. De Martino, L. Leuzzi, E. Marinari, Journal of Statistical Mechanics: Theory and Experiment 2017 (2017).
2017 | Journal Article | IST-REx-ID: 824 |

Heteroclinic path to spatially localized chaos in pipe flow
N.B. Budanur, B. Hof, Journal of Fluid Mechanics 827 (2017).
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N.B. Budanur, B. Hof, Journal of Fluid Mechanics 827 (2017).
2017 | Journal Article | IST-REx-ID: 825 |

Metadata for research data in practice
B. Petritsch, Mitteilungen Der Vereinigung Österreichischer Bibliothekarinnen & Bibliothekare 70 (2017) 200–207.
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B. Petritsch, Mitteilungen Der Vereinigung Österreichischer Bibliothekarinnen & Bibliothekare 70 (2017) 200–207.
2017 | Conference Paper | IST-REx-ID: 559 |

Beyond Hellman’s time-memory trade-offs with applications to proofs of space
H.M. Abusalah, J.F. Alwen, B. Cohen, D. Khilko, K.Z. Pietrzak, L. Reyzin, in:, Springer, 2017, pp. 357–379.
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H.M. Abusalah, J.F. Alwen, B. Cohen, D. Khilko, K.Z. Pietrzak, L. Reyzin, in:, Springer, 2017, pp. 357–379.
2017 | Conference Paper | IST-REx-ID: 833 |

Streaming algorithm for Euler characteristic curves of multidimensional images
T. Heiss, H. Wagner, in:, M. Felsberg, A. Heyden, N. Krüger (Eds.), Springer, 2017, pp. 397–409.
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T. Heiss, H. Wagner, in:, M. Felsberg, A. Heyden, N. Krüger (Eds.), Springer, 2017, pp. 397–409.
2017 | Journal Article | IST-REx-ID: 834 |

Thouless energy and multifractality across the many-body localization transition
M. Serbyn, P. Zlatko, D. Abanin, Physical Review B - Condensed Matter and Materials Physics 96 (2017).
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M. Serbyn, P. Zlatko, D. Abanin, Physical Review B - Condensed Matter and Materials Physics 96 (2017).
2017 | Conference Paper | IST-REx-ID: 836
Finding eigenvalues of self-maps with the Kronecker canonical form
M. Ethier, G. Jablonski, M. Mrozek, in:, Special Sessions in Applications of Computer Algebra, Springer, 2017, pp. 119–136.
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| DOI
M. Ethier, G. Jablonski, M. Mrozek, in:, Special Sessions in Applications of Computer Algebra, Springer, 2017, pp. 119–136.
2017 | Thesis | IST-REx-ID: 837 |

Reactivation of the hippocampal cognitive map in goal-directed spatial tasks
H. Xu, Reactivation of the Hippocampal Cognitive Map in Goal-Directed Spatial Tasks, IST Austria, 2017.
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H. Xu, Reactivation of the Hippocampal Cognitive Map in Goal-Directed Spatial Tasks, IST Austria, 2017.
2017 | Conference Paper | IST-REx-ID: 1001 |

CurveUps: Shaping objects from flat plates with tension-actuated curvature
R. Guseinov, E. Miguel, B. Bickel, in:, ACM, 2017.
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R. Guseinov, E. Miguel, B. Bickel, in:, ACM, 2017.
2017 | Thesis | IST-REx-ID: 838 |

(The exact security of) Message authentication codes
M. Rybar, (The Exact Security of) Message Authentication Codes, IST Austria, 2017.
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M. Rybar, (The Exact Security of) Message Authentication Codes, IST Austria, 2017.
2017 | Journal Article | IST-REx-ID: 6196 |

The exact security of PMAC
P. Gazi, K.Z. Pietrzak, M. Rybar, IACR Transactions on Symmetric Cryptology 2016 (2017) 145–161.
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P. Gazi, K.Z. Pietrzak, M. Rybar, IACR Transactions on Symmetric Cryptology 2016 (2017) 145–161.
2017 | Thesis | IST-REx-ID: 839 |

Brittle fracture simulation with boundary elements for computer graphics
D. Hahn, Brittle Fracture Simulation with Boundary Elements for Computer Graphics, IST Austria, 2017.
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D. Hahn, Brittle Fracture Simulation with Boundary Elements for Computer Graphics, IST Austria, 2017.
2017 | Journal Article | IST-REx-ID: 486 |

Scattering-aware texture reproduction for 3D printing
O. Elek, D. Sumin, R. Zhang, T. Weyrich, K. Myszkowski, B. Bickel, A. Wilkie, J. Krivanek, ACM Transactions on Graphics 36 (2017).
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O. Elek, D. Sumin, R. Zhang, T. Weyrich, K. Myszkowski, B. Bickel, A. Wilkie, J. Krivanek, ACM Transactions on Graphics 36 (2017).
2017 | Conference Paper | IST-REx-ID: 1002 |

Functionality-aware retargeting of mechanisms to 3D shapes
R. Zhang, T. Auzinger, D. Ceylan, W. Li, B. Bickel, in:, ACM, 2017.
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R. Zhang, T. Auzinger, D. Ceylan, W. Li, B. Bickel, in:, ACM, 2017.
2017 | Research Data | IST-REx-ID: 5568 |

Source codes: Brittle fracture simulation with boundary elements for computer graphics
D. Hahn, (2017).
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D. Hahn, (2017).
2017 | Book Chapter | IST-REx-ID: 84
Computational topology for structural molecular biology
H. Edelsbrunner, P. Koehl, in:, C. Toth, J. O’Rourke, J. Goodman (Eds.), Handbook of Discrete and Computational Geometry, Third Edition, CRC Press, 2017, pp. 1709–1735.
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H. Edelsbrunner, P. Koehl, in:, C. Toth, J. O’Rourke, J. Goodman (Eds.), Handbook of Discrete and Computational Geometry, Third Edition, CRC Press, 2017, pp. 1709–1735.
2017 | Journal Article | IST-REx-ID: 840 |

Fast hole tunneling times in germanium hut wires probed by single-shot reflectometry
L. Vukušić, J. Kukucka, H. Watzinger, G. Katsaros, Nano Letters 17 (2017) 5706–5710.
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L. Vukušić, J. Kukucka, H. Watzinger, G. Katsaros, Nano Letters 17 (2017) 5706–5710.
2017 | Thesis | IST-REx-ID: 6287 |

Discrete Morse theory for random complexes
A. Nikitenko, Discrete Morse Theory for Random Complexes , IST Austria, 2017.
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A. Nikitenko, Discrete Morse Theory for Random Complexes , IST Austria, 2017.
2017 | Journal Article | IST-REx-ID: 1120 |

Angular self-localization of impurities rotating in a bosonic bath
X. Li, R. Seiringer, M. Lemeshko, Physical Review A 95 (2017).
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X. Li, R. Seiringer, M. Lemeshko, Physical Review A 95 (2017).
2017 | Journal Article | IST-REx-ID: 910 |

When does frequency-independent selection maintain genetic variation?
S. Novak, N.H. Barton, Genetics 207 (2017) 653–668.
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S. Novak, N.H. Barton, Genetics 207 (2017) 653–668.
2017 | Journal Article | IST-REx-ID: 912 |

A lower bound for the BCS functional with boundary conditions at infinity
A. Deuchert, Journal of Mathematical Physics 58 (2017).
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A. Deuchert, Journal of Mathematical Physics 58 (2017).
2017 | Conference Paper | IST-REx-ID: 916 |

A study of lagrangean decompositions and dual ascent solvers for graph matching
P. Swoboda, C. Rother, C. Abu Alhaija, D. Kainmueller, B. Savchynskyy, in:, IEEE, 2017, pp. 7062–7071.
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| DOI
P. Swoboda, C. Rother, C. Abu Alhaija, D. Kainmueller, B. Savchynskyy, in:, IEEE, 2017, pp. 7062–7071.
2017 | Conference Paper | IST-REx-ID: 942
S3: Syntax- and semantic-guided repair synthesis via programming by examples
X. Le, D.H. Chu, D. Lo, C. Le Goues, W. Visser, in:, ACM, 2017, pp. 593–604.
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| DOI
X. Le, D.H. Chu, D. Lo, C. Le Goues, W. Visser, in:, ACM, 2017, pp. 593–604.
2017 | Journal Article | IST-REx-ID: 945 |

Global dosage compensation is ubiquitous in Lepidoptera, but counteracted by the masculinization of the Z chromosome
A.K. Huylmans, A. Macon, B. Vicoso, Molecular Biology and Evolution 34 (2017) 2637–2649.
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A.K. Huylmans, A. Macon, B. Vicoso, Molecular Biology and Evolution 34 (2017) 2637–2649.
2017 | Journal Article | IST-REx-ID: 9445 |

DDM1 and Lsh remodelers allow methylation of DNA wrapped in nucleosomes
D.B. Lyons, D. Zilberman, ELife 6 (2017).
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| PubMed | Europe PMC
D.B. Lyons, D. Zilberman, ELife 6 (2017).
2017 | Journal Article | IST-REx-ID: 944
Mosaic analysis with double markers reveals distinct sequential functions of Lgl1 in neural stem cells
R.J. Beattie, M.P. Postiglione, L. Burnett, S. Laukoter, C. Streicher, F. Pauler, G. Xiao, O. Klezovitch, V. Vasioukhin, T. Ghashghaei, S. Hippenmeyer, Neuron 94 (2017) 517–533.e3.
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| DOI
R.J. Beattie, M.P. Postiglione, L. Burnett, S. Laukoter, C. Streicher, F. Pauler, G. Xiao, O. Klezovitch, V. Vasioukhin, T. Ghashghaei, S. Hippenmeyer, Neuron 94 (2017) 517–533.e3.
2017 | Journal Article | IST-REx-ID: 946 |

Live tracking of moving samples in confocal microscopy for vertically grown roots
D. von Wangenheim, R. Hauschild, M. Fendrych, V. Barone, E. Benková, J. Friml, ELife 6 (2017).
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D. von Wangenheim, R. Hauschild, M. Fendrych, V. Barone, E. Benková, J. Friml, ELife 6 (2017).
2017 | Research Data | IST-REx-ID: 5566 |

Live tracking of moving samples in confocal microscopy for vertically grown roots
R. Hauschild, (2017).
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R. Hauschild, (2017).
2017 | Journal Article | IST-REx-ID: 952 |

Deploying dengue-suppressing Wolbachia: Robust models predict slow but effective spatial spread in Aedes aegypti
M. Turelli, N.H. Barton, Theoretical Population Biology 115 (2017) 45–60.
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| PubMed | Europe PMC
M. Turelli, N.H. Barton, Theoretical Population Biology 115 (2017) 45–60.
2017 | Journal Article | IST-REx-ID: 954 |

On the mechanistic nature of epistasis in a canonical cis-regulatory element
M. Lagator, T. Paixao, N.H. Barton, J.P. Bollback, C.C. Guet, ELife 6 (2017).
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| Files available
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M. Lagator, T. Paixao, N.H. Barton, J.P. Bollback, C.C. Guet, ELife 6 (2017).
2017 | Book Chapter | IST-REx-ID: 957
Ancestral protein reconstruction and circular permutation for improving the stability and dynamic range of FRET sensors
B. Clifton, J. Whitfield, I. Sanchez-Romero, M. Herde, C. Henneberger, H.L. Janovjak, C. Jackson, in:, V. Stein (Ed.), Synthetic Protein Switches, Springer, 2017, pp. 71–87.
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| DOI
B. Clifton, J. Whitfield, I. Sanchez-Romero, M. Herde, C. Henneberger, H.L. Janovjak, C. Jackson, in:, V. Stein (Ed.), Synthetic Protein Switches, Springer, 2017, pp. 71–87.
2017 | Journal Article | IST-REx-ID: 959 |

Scales and multimodal flux distributions in stationary metabolic network models via thermodynamics
D. De Martino, Physical Review E Statistical Nonlinear and Soft Matter Physics 95 (2017) 062419.
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| Download Submitted Version (ext.)
D. De Martino, Physical Review E Statistical Nonlinear and Soft Matter Physics 95 (2017) 062419.
2017 | Thesis | IST-REx-ID: 961 |

Cell adhesion and cell fate: An effective feedback loop during zebrafish gastrulation
V. Barone, Cell Adhesion and Cell Fate: An Effective Feedback Loop during Zebrafish Gastrulation, IST Austria, 2017.
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V. Barone, Cell Adhesion and Cell Fate: An Effective Feedback Loop during Zebrafish Gastrulation, IST Austria, 2017.
2017 | Conference Paper | IST-REx-ID: 963 |

Timed network games with clocks
G. Avni, S. Guha, O. Kupferman, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2017.
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G. Avni, S. Guha, O. Kupferman, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2017.
2017 | Journal Article | IST-REx-ID: 1199 |

How does epistasis influence the response to selection?
N.H. Barton, Heredity 118 (2017) 96–109.
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N.H. Barton, Heredity 118 (2017) 96–109.
2017 | Research Data Reference | IST-REx-ID: 9709 |

Data from: Error-robust modes of the retinal population code
J. Prentice, O. Marre, M. Ioffe, A. Loback, G. Tkačik, M. Berry, (2017).
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J. Prentice, O. Marre, M. Ioffe, A. Loback, G. Tkačik, M. Berry, (2017).
2017 | Journal Article | IST-REx-ID: 541 |

Cell-to-cell variation and specialization in sugar metabolism in clonal bacterial populations
N. Nikolic, F. Schreiber, A. Dal Co, D. Kiviet, T. Bergmiller, S. Littmann, M. Kuypers, M. Ackermann, PLoS Genetics 13 (2017).
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| Files available
| DOI
N. Nikolic, F. Schreiber, A. Dal Co, D. Kiviet, T. Bergmiller, S. Littmann, M. Kuypers, M. Ackermann, PLoS Genetics 13 (2017).
2017 | Journal Article | IST-REx-ID: 561 |

Effects of mutations in phage restriction sites during escape from restriction–modification
M. Pleska, C.C. Guet, Biology Letters 13 (2017).
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| Download Published Version (ext.)
| PubMed | Europe PMC
M. Pleska, C.C. Guet, Biology Letters 13 (2017).
2017 | Research Data Reference | IST-REx-ID: 9847 |

Supplementary materials and methods; Full data set from effects of mutations in phage restriction sites during escape from restriction–modification
M. Pleska, C.C. Guet, (2017).
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M. Pleska, C.C. Guet, (2017).
2017 | Research Data Reference | IST-REx-ID: 9845
Mathematical model
N. Nikolic, F. Schreiber, A. Dal Co, D. Kiviet, T. Bergmiller, S. Littmann, M. Kuypers, M. Ackermann, (2017).
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N. Nikolic, F. Schreiber, A. Dal Co, D. Kiviet, T. Bergmiller, S. Littmann, M. Kuypers, M. Ackermann, (2017).