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5055 Publications

2011 | Technical Report | IST-REx-ID: 5386 | OA
C. Chen, D. Freedman, and C. Lampert, Enforcing topological constraints in random field image segmentation. IST Austria, 2011.
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2011 | Technical Report | IST-REx-ID: 5383 | OA
T. Wies, M. Muñiz, and V. Kuncak, On an efficient decision procedure for imperative tree data structures. IST Austria, 2011.
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2011 | Technical Report | IST-REx-ID: 5384 | OA
K. Chatterjee and M. Tracol, Decidable problems for probabilistic automata on infinite words. IST Austria, 2011.
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2011 | Conference Paper | IST-REx-ID: 3336
C. Chen, D. Freedman, and C. Lampert, “Enforcing topological constraints in random field image segmentation,” in CVPR: Computer Vision and Pattern Recognition, Colorado Springs, CO, United States, 2011, pp. 2089–2096.
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2011 | Conference Paper | IST-REx-ID: 3323
T. Wies, M. Muñiz, and V. Kuncak, “An efficient decision procedure for imperative tree data structures,” presented at the CADE 23: Automated Deduction , Wrocław, Poland, 2011, vol. 6803, pp. 476–491.
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2011 | Conference Paper | IST-REx-ID: 3366 | OA
P. Cerny, K. Chatterjee, T. A. Henzinger, A. Radhakrishna, and R. Singh, “Quantitative synthesis for concurrent programs,” presented at the CAV: Computer Aided Verification, Snowbird, USA, 2011, vol. 6806, pp. 243–259.
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2011 | Conference Paper | IST-REx-ID: 3345 | OA
K. Chatterjee and L. Doyen, “Energy and mean-payoff parity Markov Decision Processes,” presented at the MFCS: Mathematical Foundations of Computer Science, Warsaw, Poland, 2011, vol. 6907, pp. 206–218.
[Preprint] View | Files available | DOI | Download Preprint (ext.) | arXiv
 
2011 | Technical Report | IST-REx-ID: 5387 | OA
K. Chatterjee and L. Doyen, Energy and mean-payoff parity Markov decision processes. IST Austria, 2011.
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2011 | Journal Article | IST-REx-ID: 6496 | OA
H. Park, P. Oikonomou, C. C. Guet, and P. Cluzel, “Noise underlies switching behavior of the bacterial flagellum,” Biophysical Journal, vol. 101, no. 10. Elsevier, pp. 2336–2340, 2011.
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2011 | Journal Article | IST-REx-ID: 9483 | OA
T.-F. Hsieh et al., “Regulation of imprinted gene expression in Arabidopsis endosperm,” Proceedings of the National Academy of Sciences, vol. 108, no. 5. National Academy of Sciences, pp. 1755–1762, 2011.
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2011 | Other Publication | IST-REx-ID: 9522 | OA
D. Zilberman, Balancing parental contributions in plant embryonic gene activation, vol. 20, no. 6. Elsevier, 2011, pp. 735–736.
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2011 | Conference Paper | IST-REx-ID: 9648 | OA
R. Gonzalez-Diaz, A. Ion, M. J. Jimenez, and R. Poyatos, “Incremental-decremental algorithm for computing AT-models and persistent homology,” in Computer Analysis of Images and Patterns, Seville, Spain, 2011, vol. 6854, pp. 286–293.
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2011 | Journal Article | IST-REx-ID: 3395
F. Palero, P. Abello, E. Macpherson, M. Beaumont, and M. Pascual, “Effect of oceanographic barriers and overfishing on the population genetic structure of the European spiny lobster Palinurus elephas,” Biological Journal of the Linnean Society, vol. 104, no. 2. Wiley-Blackwell, pp. 407–418, 2011.
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2011 | Research Data Reference | IST-REx-ID: 9762 | OA
F. Palero, P. Abello, E. Macpherson, M. Beaumont, and M. Pascual, “Data from: Effect of oceanographic barriers and overfishing on the population genetic structure of the European spiny lobster (Palinurus elephas).” IST Austria, 2011.
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2011 | Conference Paper | IST-REx-ID: 9943 | OA
C. M. Sommer, C. Straehle, U. Köthe, and F. A. Hamprecht, “Ilastik: Interactive learning and segmentation toolkit,” in 2011 IEEE International Symposium on Biomedical Imaging: from Nano to Micro, Chicago, Illinois, USA, 2011.
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2011 | Conference Paper | IST-REx-ID: 10907
N. M. Artner, A. Ion, and W. G. Kropatsch, “Spatio-temporal extraction of articulated models in a graph pyramid,” in Graph-Based Representations in Pattern Recognition, Münster, Germany, 2011, vol. 6658, pp. 215–224.
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2011 | Thesis | IST-REx-ID: 3275 | OA
K. Schumann, “The role of chemotactic gradients in dendritic cell migration,” Institute of Science and Technology Austria, 2011.
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2011 | Thesis | IST-REx-ID: 3273
J.-L. Maître, “Mechanics of adhesion and de‐adhesion in zebrafish germ layer progenitors,” Institute of Science and Technology Austria, 2011.
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2011 | Journal Article | IST-REx-ID: 3392
S. Soriano et al., “In vivo analysis of uropod function during physiological T cell trafficking,” Journal of Immunology, vol. 187, no. 5. American Association of Immunologists, pp. 2356–2364, 2011.
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2011 | Conference Paper | IST-REx-ID: 3163
C. Lampert, “Maximum margin multi-label structured prediction,” presented at the NIPS: Neural Information Processing Systems, Granada, Spain, 2011.
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2011 | Conference Poster | IST-REx-ID: 3322
C. Lampert, Maximum margin multi label structured prediction. Neural Information Processing Systems Foundation, 2011.
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2011 | Journal Article | IST-REx-ID: 3320 | OA
S. Nowozin and C. Lampert, “Structured learning and prediction in computer vision,” Foundations and Trends in Computer Graphics and Vision, vol. 6, no. 3–4. Now Publishers, pp. 185–365, 2011.
[Published Version] View | Files available | DOI
 
2011 | Conference Paper | IST-REx-ID: 3319
N. Quadrianto and C. Lampert, “Learning multi-view neighborhood preserving projections,” presented at the ICML: International Conference on Machine Learning, Bellevue, United States, 2011, pp. 425–432.
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2011 | Journal Article | IST-REx-ID: 3373 | OA
M. Jahnel, M. Behrndt, A. Jannasch, E. Schaeffer, and S. Grill, “Measuring the complete force field of an optical trap,” Optics Letters, vol. 36, no. 7. Optica Publishing Group, pp. 1260–1262, 2011.
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2011 | Journal Article | IST-REx-ID: 3375 | OA
H. de Vladar and N. H. Barton, “The statistical mechanics of a polygenic character under stabilizing selection mutation and drift,” Journal of the Royal Society Interface, vol. 8, no. 58. The Royal Society, pp. 720–739, 2011.
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2011 | Journal Article | IST-REx-ID: 3393 | OA
N. H. Barton and M. Turelli, “Spatial waves of advance with bistable dynamics: Cytoplasmic and genetic analogues of Allee effects,” American Naturalist, vol. 178, no. 3. The University of Chicago Press, pp. E48–E75, 2011.
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2010 | Conference Paper | IST-REx-ID: 10908 | OA
R. Blanc, T. A. Henzinger, T. Hottelier, and L. Kovács, “ABC: Algebraic Bound Computation for loops,” in Logic for Programming, Artificial Intelligence, and Reasoning, Dakar, Senegal, 2010, vol. 6355, pp. 103–118.
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2010 | Journal Article | IST-REx-ID: 2409 | OA
A. Kupczok, H. Schmidt, and A. Von Haeseler, “Accuracy of phylogeny reconstruction methods combining overlapping gene data sets ,” Algorithms for Molecular Biology, vol. 5, no. 1. BioMed Central, 2010.
[Published Version] View | Files available | DOI
 
2010 | Conference Paper | IST-REx-ID: 10909
C. Chen and D. Freedman, “Hardness results for homology localization,” in Proceedings of the 2010 Annual ACM-SIAM Symposium on Discrete Algorithms, Austin, TX, United States, 2010, pp. 1594–1604.
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2010 | Journal Article | IST-REx-ID: 3303 | OA
D. Weissman, M. Feldman, and D. Fisher, “The rate of fitness-valley crossing in sexual populations,” Genetics, vol. 186, no. 4. Genetics Society of America, pp. 1389–1410, 2010.
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2010 | Journal Article | IST-REx-ID: 3604
H. Senn, S. Goodman, G. Swanson, N. H. Barton, and J. Pemberton, “Investigating temporal changes in hybridisation and introgression between invasive sika (Cervus nippon) and native red deer (Cervus elaphus) on the Kintyre Peninsula, Scotland,” Molecular Ecology, vol. 19, no. 5. Wiley-Blackwell, pp. 910–924, 2010.
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2010 | Conference Paper | IST-REx-ID: 3719 | OA
J. Feret, T. A. Henzinger, H. Koeppl, and T. Petrov, “Lumpability abstractions of rule-based systems,” presented at the MECBIC: Membrane Computing and Biologically Inspired Process Calculi, Jena, Germany, 2010, vol. 40, pp. 142–161.
[Submitted Version] View | Files available | arXiv
 
2010 | Journal Article | IST-REx-ID: 3718
J. Guzmán et al., “P2Y1 receptors inhibit long-term depression in the prefrontal cortex.,” Neuropharmacology, vol. 59, no. 6. Elsevier, pp. 406–415, 2010.
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2010 | Journal Article | IST-REx-ID: 3783
F. Palero, F. González Candelas, and M. Pascual, “Microsatelight – Pipeline to expedite microsatellite analysis,” Journal of Heredity, vol. 102, no. 2. Oxford University Press, pp. 247–249, 2010.
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2010 | Conference Paper | IST-REx-ID: 3782
C. Chen and D. Freedman, “Topology noise removal for curve  and surface evolution,” in Conference proceedings MCV 2010, Beijing, China, 2010, vol. 6533, pp. 31–42.
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2010 | Book Chapter | IST-REx-ID: 3795 | OA
H. Edelsbrunner, D. Morozov, and A. Patel, “The stability of the apparent contour of an orientable 2-manifold,” in Topological Data Analysis and Visualization: Theory, Algorithms and Applications, Springer, 2010, pp. 27–42.
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2010 | Conference Paper | IST-REx-ID: 3794
C. Lampert and O. Krömer, “Weakly-paired maximum covariance analysis for multimodal dimensionality reduction and transfer learning,” presented at the ECCV: European Conference on Computer Vision, Heraklion, Crete, Greece, 2010, vol. 6312, pp. 566–579.
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2010 | Journal Article | IST-REx-ID: 3832 | OA
J. Guzmán and P. M. Jonas, “Beyond TARPs: The growing list of auxiliary AMPAR subunits,” Neuron, vol. 66, no. 1. Elsevier, pp. 8–10, 2010.
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2010 | Journal Article | IST-REx-ID: 3833
P. M. Jonas and S. Hefft, “GABA release at terminals of CCK-interneurons: synchrony, asynchrony and modulation by cannabinoid receptors (commentary on Ali & Todorova),” The European Journal of Neuroscience, vol. 31, no. 7. Wiley-Blackwell, pp. 1194–1195, 2010.
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2010 | Conference Paper | IST-REx-ID: 3847 | OA
F. Didier, T. A. Henzinger, M. Mateescu, and V. Wolf, “SABRE: A tool for the stochastic analysis of biochemical reaction networks,” presented at the QEST: Quantitative Evaluation of Systems, Williamsburg, USA, 2010, pp. 193–194.
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2010 | Conference Paper | IST-REx-ID: 3845 | OA
T. A. Henzinger, T. Hottelier, L. Kovács, and A. Rybalchenko, “Aligators for arrays,” presented at the LPAR: Logic for Programming, Artificial Intelligence, and Reasoning, Yogyakarta, Indonesia, 2010, vol. 6397, pp. 348–356.
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2010 | Journal Article | IST-REx-ID: 3842 | OA
F. Didier, T. A. Henzinger, M. Mateescu, and V. Wolf, “Fast adaptive uniformization of the chemical master equation,” IET Systems Biology, vol. 4, no. 6. Institution of Engineering and Technology, pp. 441–452, 2010.
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2010 | Conference Paper | IST-REx-ID: 3848
P. Bendich, H. Edelsbrunner, D. Morozov, and A. Patel, “The robustness of level sets,” presented at the ESA: European Symposium on Algorithms, Liverpool, UK, 2010, vol. 6346, pp. 1–10.
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2010 | Conference Paper | IST-REx-ID: 3858 | OA
K. Chatterjee and L. Doyen, “The complexity of partial-observation parity games,” presented at the LPAR: Logic for Programming, Artificial Intelligence, and Reasoning, Yogyakarta, Indonesia, 2010, vol. 6397, pp. 1–14.
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2010 | Conference Paper | IST-REx-ID: 3856 | OA
K. Chatterjee, L. Doyen, H. Gimbert, and T. A. Henzinger, “Randomness for free,” presented at the MFCS: Mathematical Foundations of Computer Science, Brno, Czech Republic, 2010, vol. 6281, pp. 246–257.
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2010 | Conference (Editor) | IST-REx-ID: 3859
K. Chatterjee and T. A. Henzinger, Eds., Formal modeling and analysis of timed systems, vol. 6246. Springer, 2010.
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2010 | Conference Paper | IST-REx-ID: 3866 | OA
R. Bloem, K. Chatterjee, K. Greimel, T. A. Henzinger, and B. Jobstmann, “Robustness in the presence of liveness,” presented at the CAV: Computer Aided Verification, Edinburgh, UK, 2010, vol. 6174, pp. 410–424.
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2010 | Journal Article | IST-REx-ID: 3868 | OA
K. Chatterjee, L. De Alfaro, R. Majumdar, and V. Raman, “Algorithms for game metrics,” Logical Methods in Computer Science, vol. 6, no. 3. International Federation of Computational Logic, pp. 1–27, 2010.
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2010 | Journal Article | IST-REx-ID: 4134
J. Bridle, J. Polechova, M. Kawata, and R. Butlin, “Why is adaptation prevented at ecological margins? New insights from individual-based simulations,” Ecology Letters, vol. 13, no. 4. Wiley-Blackwell, pp. 485–494, 2010.
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2010 | Journal Article | IST-REx-ID: 4243 | OA
N. H. Barton, A. Etheridge, and A. Véber, “A new model for evolution in a spatial continuum,” Electronic Journal of Probability, vol. 15, no. 7. Institute of Mathematical Statistics, pp. 162–216, 2010.
[Published Version] View | Files available | DOI
 

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