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5749 Publications
2025 | In Press | Journal Article | IST-REx-ID: 19443 |

FakET: Simulating cryo-electron tomograms with neural style transfer
P. Harar, L. Herrmann, P. Grohs, D. Haselbach, Structure (n.d.).
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P. Harar, L. Herrmann, P. Grohs, D. Haselbach, Structure (n.d.).
2025 | Published | Journal Article | IST-REx-ID: 19436 |

DNA methylation dynamics in male germline development in Brassica Rapa
J. Zhang, D. Wu, Y. Zhang, X. Feng, H. Gao, Molecular Horticulture 5 (2025).
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J. Zhang, D. Wu, Y. Zhang, X. Feng, H. Gao, Molecular Horticulture 5 (2025).
2025 | Draft | Preprint | IST-REx-ID: 19398 |

TMK interacting network of receptor like kinases for auxin canalization and beyond
A. Monzer, E. Mazur, L. Rodriguez Solovey, M.C. Gallei, M. Zou, M. Smejkal, E. Cervenova, J. Friml, BioRxiv (n.d.).
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A. Monzer, E. Mazur, L. Rodriguez Solovey, M.C. Gallei, M. Zou, M. Smejkal, E. Cervenova, J. Friml, BioRxiv (n.d.).
2025 | Published | Thesis | IST-REx-ID: 19431
Regulation of Cytoplasmic RNA Polymerase II
Hlavata, Annamaria, Regulation of Cytoplasmic RNA Polymerase II. 2025
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Hlavata, Annamaria, Regulation of Cytoplasmic RNA Polymerase II. 2025
2025 | Published | Thesis | IST-REx-ID: 19456
The role of prefrontal spatial coding in supporting a contextual association task
Cumpelik, Andrea D, The role of prefrontal spatial coding in supporting a contextual association task. 2025
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Cumpelik, Andrea D, The role of prefrontal spatial coding in supporting a contextual association task. 2025
2025 | Published | Journal Article | IST-REx-ID: 19438 |

Short INDELs and SNPs as markers of evolutionary processes in hybrid zones
Perini, Samuel, Short INDELs and SNPs as markers of evolutionary processes in hybrid zones. Journal of Evolutionary Biology 38 (3). 2025
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Perini, Samuel, Short INDELs and SNPs as markers of evolutionary processes in hybrid zones. Journal of Evolutionary Biology 38 (3). 2025
2025 | Published | Journal Article | IST-REx-ID: 14647 |

Dual role of FOXG1 in regulating gliogenesis in the developing neocortex via the FGF signalling pathway
Bose, Mahima, Dual role of FOXG1 in regulating gliogenesis in the developing neocortex via the FGF signalling pathway. eLife 13. 2025
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Bose, Mahima, Dual role of FOXG1 in regulating gliogenesis in the developing neocortex via the FGF signalling pathway. eLife 13. 2025
2025 | Epub ahead of print | Journal Article | IST-REx-ID: 19465
Understanding the machinery that reads the genome
Bernecky, Carrie A, Understanding the machinery that reads the genome. Nature Reviews Molecular Cell Biology. 2025
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Bernecky, Carrie A, Understanding the machinery that reads the genome. Nature Reviews Molecular Cell Biology. 2025
2025 | Epub ahead of print | Journal Article | IST-REx-ID: 19483 |

6-torision and integral points on quartic threefolds
Chan, Yik Tung, 6-torision and integral points on quartic threefolds. Annali della Scuola Normale Superiore di Pisa, Classe di Scienze. 2025
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Chan, Yik Tung, 6-torision and integral points on quartic threefolds. Annali della Scuola Normale Superiore di Pisa, Classe di Scienze. 2025
2025 | In Press | Journal Article | IST-REx-ID: 19507 |

Spatiotemporal switches in progenitor cell fate govern upper hair follicle growth and maintenance
Andersen, Marianne S., Spatiotemporal switches in progenitor cell fate govern upper hair follicle growth and maintenance. Journal of Investigative Dermatology. 2025
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Andersen, Marianne S., Spatiotemporal switches in progenitor cell fate govern upper hair follicle growth and maintenance. Journal of Investigative Dermatology. 2025
2025 | Epub ahead of print | Journal Article | IST-REx-ID: 19504 |

A giant disk galaxy two billion years after the Big Bang
Wang, Weichen, A giant disk galaxy two billion years after the Big Bang. Nature Astronomy. 2025
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Wang, Weichen, A giant disk galaxy two billion years after the Big Bang. Nature Astronomy. 2025
2025 | Published | Journal Article | IST-REx-ID: 19502 |

Nonadiabatic laser-induced alignment dynamics of alkali-metal dimers on the surface of a helium droplet
Kristensen, Henrik H., Nonadiabatic laser-induced alignment dynamics of alkali-metal dimers on the surface of a helium droplet. Physical Review A 111 (3). 2025
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Kristensen, Henrik H., Nonadiabatic laser-induced alignment dynamics of alkali-metal dimers on the surface of a helium droplet. Physical Review A 111 (3). 2025
2025 | Published | Journal Article | IST-REx-ID: 19498
Neuroendocrine control of synaptic transmission by PHAC-1 in C. elegans
Stratigi, Aikaterini, Neuroendocrine control of synaptic transmission by PHAC-1 in C. elegans. Journal of Neuroscience 45 (13). 2025
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Stratigi, Aikaterini, Neuroendocrine control of synaptic transmission by PHAC-1 in C. elegans. Journal of Neuroscience 45 (13). 2025
2025 | Published | Journal Article | IST-REx-ID: 19497 |

Can quasars, triggered by mergers, account for NANOGrav’s stochastic gravitational wave background?
Kis-Tóth, Ágnes, Can quasars, triggered by mergers, account for NANOGrav’s stochastic gravitational wave background?. Classical and Quantum Gravity 42 (7). 2025
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Kis-Tóth, Ágnes, Can quasars, triggered by mergers, account for NANOGrav’s stochastic gravitational wave background?. Classical and Quantum Gravity 42 (7). 2025
2025 | Published | Journal Article | IST-REx-ID: 19495 |

Latent Ewald summation for machine learning of long-range interactions
Cheng, Bingqing, Latent Ewald summation for machine learning of long-range interactions. npj Computational Materials 11. 2025
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Cheng, Bingqing, Latent Ewald summation for machine learning of long-range interactions. npj Computational Materials 11. 2025
2025 | Published | Journal Article | IST-REx-ID: 19496 |

Scales
Helfter, Mathieu, Scales. Mathematische Zeitschrift 310. 2025
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Helfter, Mathieu, Scales. Mathematische Zeitschrift 310. 2025
2025 | Published | Journal Article | IST-REx-ID: 18157 |

Books, Hallways, and social butterflies: A note on sliding block puzzles
Brunck, Florestan R, Books, Hallways, and social butterflies: A note on sliding block puzzles. Mathematical Intelligencer 47. 2025
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Brunck, Florestan R, Books, Hallways, and social butterflies: A note on sliding block puzzles. Mathematical Intelligencer 47. 2025
2025 | In Press | Journal Article | IST-REx-ID: 18823 |

Memory of maternal temperatures: DNA methylation alterations across generations
Cao, Dechang, Memory of maternal temperatures: DNA methylation alterations across generations. Plant Physiology 197 (1). 2025
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Cao, Dechang, Memory of maternal temperatures: DNA methylation alterations across generations. Plant Physiology 197 (1). 2025
2025 | Published | Journal Article | IST-REx-ID: 19036 |

Layer-specific control of inhibition by NDNF interneurons
Naumann, Laura B, Layer-specific control of inhibition by NDNF interneurons. Proceedings of the National Academy of Sciences of the United States of America 122 (4). 2025
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Naumann, Laura B, Layer-specific control of inhibition by NDNF interneurons. Proceedings of the National Academy of Sciences of the United States of America 122 (4). 2025
2025 | Published | Journal Article | IST-REx-ID: 19529 |

Identification and inhibition of PIN1-NRF2 protein–protein interactions through computational and biophysical approaches
Ozleyen, Adem, Identification and inhibition of PIN1-NRF2 protein–protein interactions through computational and biophysical approaches. Scientific Reports 15. 2025
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Ozleyen, Adem, Identification and inhibition of PIN1-NRF2 protein–protein interactions through computational and biophysical approaches. Scientific Reports 15. 2025