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5473 Publications

2013 | Published | Journal Article | IST-REx-ID: 2816 | OA
Evolutionary dynamics of cancer in response to targeted combination therapy
I. Božić, J. Reiter, B. Allen, T. Antal, K. Chatterjee, P. Shah, Y. Moon, A. Yaqubie, N. Kelly, D. Le, E. Lipson, P. Chapman, L. Diaz, B. Vogelstein, M. Nowak, ELife 2 (2013).
[Published Version] View | Files available | DOI
 
2013 | Published | Conference Paper | IST-REx-ID: 2000 | OA
TTP: Tool for tumor progression
J. Reiter, I. Božić, K. Chatterjee, M. Nowak, in:, Proceedings of 25th Int. Conf. on Computer Aided Verification, Springer, 2013, pp. 101–106.
[Preprint] View | Files available | DOI | Download Preprint (ext.) | arXiv
 
2013 | Published | Journal Article | IST-REx-ID: 2850 | OA
The simplest maximum entropy model for collective behavior in a neural network
G. Tkačik, O. Marre, T. Mora, D. Amodei, M. Berry, W. Bialek, Journal of Statistical Mechanics Theory and Experiment 2013 (2013).
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 
2013 | Published | Journal Article | IST-REx-ID: 2851
A simple method for estimating the entropy of neural activity
M. Berry, G. Tkačik, J. Dubuis, O. Marre, R. Da Silveira, Journal of Statistical Mechanics Theory and Experiment 2013 (2013).
View | DOI
 
2012 | Published | Journal Article | IST-REx-ID: 9497 | OA
Deposition of histone variant H2A.Z within gene bodies regulates responsive genes
D. Coleman-Derr, D. Zilberman, PLoS Genetics 8 (2012).
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
2012 | Published | Journal Article | IST-REx-ID: 9499 | OA
EMF1 and PRC2 cooperate to repress key regulators of Arabidopsis development
S.Y. Kim, J. Lee, L. Eshed-Williams, D. Zilberman, Z.R. Sung, PLoS Genetics 8 (2012).
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
2012 | Published | Journal Article | IST-REx-ID: 9528
Regulation of biological accuracy, precision, and memory by plant chromatin organization
J.T. Huff, D. Zilberman, Current Opinion in Genetics and Development 22 (2012) 132–138.
View | DOI | PubMed | Europe PMC
 
2012 | Published | Journal Article | IST-REx-ID: 9535 | OA
DNA methylation, H2A.Z, and the regulation of constitutive expression
D. Coleman-Derr, D. Zilberman, Cold Spring Harbor Symposia on Quantitative Biology 77 (2012) 147–154.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
2012 | Research Data Reference | IST-REx-ID: 9755 | OA
Data from: Social transfer of pathogenic fungus promotes active immunisation in ant colonies
M. Konrad, M. Vyleta, F. Theis, M. Stock, M. Klatt, V. Drescher, C. Marr, L.V. Ugelvig, S. Cremer, (2012).
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
2012 | Research Data Reference | IST-REx-ID: 9757 | OA
Data from: Ants disinfect fungus-exposed brood by oral uptake and spread of their poison
S. Tragust, B. Mitteregger, V. Barone, M. Konrad, L.V. Ugelvig, S. Cremer, (2012).
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
2012 | Research Data Reference | IST-REx-ID: 9758 | OA
Data from: Approximate Bayesian computation for modular inference problems with many parameters: the example of migration rates
S. Aeschbacher, A. Futschik, M. Beaumont, (2012).
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
2012 | Published | Journal Article | IST-REx-ID: 9451 | OA
Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes
C.A. Ibarra, X. Feng, V.K. Schoft, T.-F. Hsieh, R. Uzawa, J.A. Rodrigues, A. Zemach, N. Chumak, A. Machlicova, T. Nishimura, D. Rojas, R.L. Fischer, H. Tamaru, D. Zilberman, Science 337 (2012) 1360–1364.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
2012 | Published | Conference Paper | IST-REx-ID: 1384 | OA
Conditional model checking: A technique to pass information between verifiers
D. Beyer, T.A. Henzinger, M. Keremoglu, P. Wendler, in:, Proceedings of the ACM SIGSOFT 20th International Symposium on the Foundations of Software Engineering, ACM, 2012.
[Preprint] View | DOI | Download Preprint (ext.)
 
2012 | Published | Book Chapter | IST-REx-ID: 10896
The double-edged sword: Gaining Adenosine at the expense of ATP. How to balance the books
S. zur Nedden, A.S. Doney, B.G. Frenguelli, in:, S. Masino, D. Boison (Eds.), Adenosine, 1st ed., Springer, New York, 2012, pp. 109–129.
View | DOI
 
2012 | Published | Conference Paper | IST-REx-ID: 10903
Accurate invariant checking for programs manipulating lists and arrays with infinite data
A. Bouajjani, C. Dragoi, C. Enea, M. Sighireanu, in:, Automated Technology for Verification and Analysis, Springer, Berlin, Heidelberg, 2012, pp. 167–182.
View | DOI
 
2012 | Published | Conference Paper | IST-REx-ID: 10904
Strategy synthesis for multi-dimensional quantitative objectives
K. Chatterjee, M. Randour, J.-F. Raskin, in:, M. Koutny, I. Ulidowski (Eds.), CONCUR 2012 - Concurrency Theory, Springer, Berlin, Heidelberg, 2012, pp. 115–131.
[Preprint] View | Files available | DOI | arXiv
 
2012 | Published | Conference Paper | IST-REx-ID: 10905 | OA
Polynomial-time algorithms for energy games with special weight structures
K. Chatterjee, M. Henzinger, S. Krinninger, D. Nanongkai, in:, Algorithms – ESA 2012, Springer, 2012, pp. 301–312.
[Preprint] View | Files available | DOI | Download Preprint (ext.) | arXiv
 
2012 | Published | Conference Paper | IST-REx-ID: 10906 | OA
HSF(C): A software verifier based on Horn clauses
S. Grebenshchikov, A. Gupta, N.P. Lopes, C. Popeea, A. Rybalchenko, in:, C. Flanagan, B. König (Eds.), Tools and Algorithms for the Construction and Analysis of Systems, Springer, Berlin, Heidelberg, 2012, pp. 549–551.
[Published Version] View | DOI | Download Published Version (ext.)
 
2012 | Published | Journal Article | IST-REx-ID: 2263 | OA
A Nestin-cre transgenic mouse is insufficient for recombination in early embryonic neural progenitors
H. Liang, S. Hippenmeyer, H. Ghashghaei, Biology Open 1 (2012) 1200–1203.
[Published Version] View | Files available | DOI
 
2012 | Published | Journal Article | IST-REx-ID: 2302
The propagation approach for computing biochemical reaction networks
T.A. Henzinger, M. Mateescu, IEEE ACM Transactions on Computational Biology and Bioinformatics 10 (2012) 310–322.
View | DOI | PubMed | Europe PMC
 

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