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6242 Publications

2025 | Published | Journal Article | IST-REx-ID: 20101 |

Baier, Felix, Katja Reinhard, Bram Nuttin, Arnau Sans-Dublanc, Chen Liu, Victoria Tong, Julie Stefanie Murmann, Keimpe Wierda, Karl Farrow, and Hopi E. Hoekstra. “The Neural Basis of Species-Specific Defensive Behaviour in Peromyscus Mice.” Nature. Springer Nature, 2025. https://doi.org/10.1038/s41586-025-09241-2.

[Published Version] View | Files available | DOI | PubMed | Europe PMC

Zava, Nicolò. “Coarse and Bi-Lipschitz Embeddability of Subspaces of the Gromov–Hausdorff Space into Hilbert Spaces.” Algebraic & Geometric Topology. Mathematical Sciences Publishers, 2025. https://doi.org/10.2140/agt.2025.25.5153.

[Published Version] View | Files available | DOI | arXiv

2025 | Published | Journal Article | IST-REx-ID: 20926 |

Kim, Dongjin, Xiaoyu Wang, Santiago Vargas, Peichen Zhong, Daniel S. King, Theo Jaffrelot Inizan, and Bingqing Cheng. “A Universal Augmentation Framework for Long-Range Electrostatics in Machine Learning Interatomic Potentials.” Journal of Chemical Theory and Computation. American Chemical Society, 2025. https://doi.org/10.1021/acs.jctc.5c01400.

2025 | Published | Journal Article | IST-REx-ID: 20869

Fuster‐Calvo, Alexandre, Coline C. Jaworski, Thomas Ellis, and Carina Baskett. “Reduced Fitness under Drought Stress in F1 Hybrids of Antirrhinum Majus Varieties with Divergent Flower Colors.” American Journal of Botany. Wiley, 2025. https://doi.org/10.1002/ajb2.70129.

View | Files available | DOI | PubMed | Europe PMC

2025 | Published | Book Chapter | IST-REx-ID: 20870

Stopa, Victoria, Miron Sopić, Guanliang Li, Judith Sluimer, José Basílio, Sander W. van der Laan, David P. Kreil, Yvan Devaux, and Bernhard Hochreiter. “Essentials of Transcriptomic Methods: Navigating through RNA Sequencing and Beyond.” In Transcriptomics in Atherosclerosis, edited by Yvan Devaux and Miron Sopic, 131–72. Elsevier, 2025. https://doi.org/10.1016/b978-0-443-33064-3.00016-5.

View | DOI

2025 | Research Data Reference | IST-REx-ID: 20883 |

Felix, Baier, Katja Reinhard, Bram Nuttin, Arnau Sans Dublanc, Chen Liu, Victoria Tong, Julie Stefanie Murmann, Keimpe Wierda, Karl Farrow, and Hopi Hoekstra. “The Neural Basis of Species-Specific Defensive Behaviour in Peromyscus Mice.” Dryad, 2025. https://doi.org/10.5061/DRYAD.Q2BVQ83XC.

[Submitted Version] View | Files available | DOI | Download Submitted Version (ext.)

Ishikawa, Yoshihiro, Melissa A Toups, Marwan N Elkrewi, Allison L. Zajac, Sally Horne-Badovinac, and Yutaka Matsubayashi. “Evidence for the Major Role of PH4⍺EFB in the Prolyl 4-Hydroxylation of Drosophila Collagen IV.” Matrix Biology. Springer Nature, 2025. https://doi.org/10.1016/j.matbio.2025.09.002.

Puixeu Sala, Gemma, and Laura Hayward. “The Relationship between Sexual Dimorphism and Intersex Correlation: Do Models Support Intuition?” Genetics. Oxford University Press, 2025. https://doi.org/10.1093/genetics/iyaf175.

[Published Version] View | Files available | DOI | WoS

Greger, Ingo H., and Jake Watson. “‘Mini Analysis’ Misrepresents Changes in Synaptic Properties Due to Incomplete Event Detection.” Journal of Physiology. Wiley, 2025. https://doi.org/10.1113/JP288183.

2025 | Published | Journal Article | IST-REx-ID: 20866 |

Bartocci, Ezio, Marek Chalupa, Thomas A Henzinger, Dejan Nickovic, and Ana Oliveira da Costa. “Hypernode Automata.” Acta Informatica. Springer Nature, 2025. https://doi.org/10.1007/s00236-025-00509-8.

[Published Version] View | Files available | DOI | arXiv

2025 | Published | Journal Article | IST-REx-ID: 20864 |

Matthee, Jorryt J. “JWST Provides a New View of Cosmic Dawn: Latest Developments in Studies of Early Galaxies.” Contemporary Physics. Taylor & Francis, 2025. https://doi.org/10.1080/00107514.2025.2586370.

[Preprint] View | DOI | Download Preprint (ext.) | arXiv

Broerman AJ, Pollmann C, Zhao Y, Lichtenstein MA, Jackson MD, Tessmer MH, Ryu WH, Ogishi M, Abedi MH, Sahtoe DD, Allen A, Kang A, De La Cruz J, Brackenbrough E, Sankaran B, Bera AK, Zuckerman DM, Stoll S, Garcia KC, Praetorius FM, Piehler J, Baker D. 2025. Design of facilitated dissociation enables timing of cytokine signalling. Nature. 647, 528–535.

Shaw, Thomas, Evan S. Miles, Michael McCarthy, Pascal Buri, Nicolas Guyennon, Franco Salerno, Luca Carturan, Benjamin Brock, and Francesca Pellicciotti. “Mountain Glaciers Recouple to Atmospheric Warming over the Twenty-First Century.” Nature Climate Change. Springer Nature, 2025. https://doi.org/10.1038/s41558-025-02449-0.

[Published Version] View | Files available | DOI | WoS

Browning, Timothy D, Will Sawin, and Victor Wang. “Pairs of Commuting Integer Matrices.” Mathematische Annalen. Springer Nature, 2025. https://doi.org/10.1007/s00208-025-03285-5.

[Published Version] View | Files available | DOI | WoS | arXiv

2025 | Published | Journal Article | IST-REx-ID: 20429

Bustamante, Gimena Noemí, Miriam Elisabet Arena, Luciano Selzer, Matthew Ruggirello, Paula Rodríguez, Samuele Pedrazzani, Jose Antonio Navarro-Cano, and Rosina Matilde Soler Schaller. “Biotic Interactions between Trees and Colonizing Shrubs: Implications for Active Restoration in Southern Patagonian Forests.” Plant Ecology. Springer Nature, 2025. https://doi.org/10.1007/s11258-025-01568-0.

View | DOI | WoS

2025 | Published | Journal Article | IST-REx-ID: 20432

Juraschek DM, Geilhufe RM, Zhu H, Basini M, Baum P, Baydin A, Chaudhary S, Fechner M, Flebus B, Grissonnanche G, Kirilyuk AI, Lemeshko M, Maehrlein SF, Mignolet M, Murakami S, Niu Q, Nowak U, Romao CP, Rostami H, Satoh T, Spaldin NA, Ueda H, Zhang L. 2025. Chiral phonons. Nature Physics. 21, 1532–1540.

View | DOI | WoS

Pal, Arka, Daria Shipilina, Alan Le Moan, Adrian J. Mcnairn, Jennifer K. Grenier, Marek Kucka, Graham Coop, et al. “Genealogical Analysis of Replicate Flower Colour Hybrid Zones in Antirrhinum.” Molecular Ecology. Wiley, 2025. https://doi.org/10.1111/mec.70067.

[Published Version] View | Files available | DOI | WoS

Kahlhofer J, Marchet N, Zubak K, Seifert B, Hotze M, Egger-Hörschinger A-S, Kucej L, Manzl C, Weyer Y, Weys S, Offterdinger M, Herzog S, Reiterer V, Volani C, Kwiatkowski M, Wortmann SB, Nemati S, Mayr JA, Zschocke J, Radlinger B, Thedieck K, Kremser L, Sarg B, Huber LA, Farhan H, de Araujo MEG, Kaser S, Scholl-Bürgi S, Karall D, Teis D. 2025. TXNIP mediates LAT1/SLC7A5 endocytosis to limit amino acid uptake in cells entering quiescence. The EMBO Journal. 44, 7119–7153.

2025 | Published | Journal Article | IST-REx-ID: 19603 |

Lill, Jonas, Kalina H Petrova, and Simon Weber. “Linear-Time MaxCut in Multigraphs Parameterized above the Poljak-Turzík Bound.” Algorithmica. Springer Nature, 2025. https://doi.org/10.1007/s00453-025-01306-y.

[Published Version] View | Files available | DOI | WoS

2025 | Published | Thesis | IST-REx-ID: 20694

Pal, Arka. “Using Genealogies to Study the Genomic Basis of Species Divergence.” Institute of Science and Technology Austria, 2025. https://doi.org/10.15479/AT-ISTA-20694.

[Published Version] View | Files available | DOI

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