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286 Publications
2022 | Published | Journal Article | IST-REx-ID: 12265 |

Reproductive isolation, speciation, and the value of disagreement: A reply to the commentaries on ‘What is reproductive isolation?’
A.M. Westram, S. Stankowski, P. Surendranadh, N.H. Barton, Journal of Evolutionary Biology 35 (2022) 1200–1205.
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A.M. Westram, S. Stankowski, P. Surendranadh, N.H. Barton, Journal of Evolutionary Biology 35 (2022) 1200–1205.
2022 | Published | Journal Article | IST-REx-ID: 11334 |

Parthenogenesis in Darevskia lizards: A rare outcome of common hybridization, not a common outcome of rare hybridization
S. Freitas, A.M. Westram, T. Schwander, M. Arakelyan, Ç. Ilgaz, Y. Kumlutas, D.J. Harris, M.A. Carretero, R.K. Butlin, Evolution 76 (2022) 899–914.
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S. Freitas, A.M. Westram, T. Schwander, M. Arakelyan, Ç. Ilgaz, Y. Kumlutas, D.J. Harris, M.A. Carretero, R.K. Butlin, Evolution 76 (2022) 899–914.
2022 | Published | Journal Article | IST-REx-ID: 12081 |

Accumulation and maintenance of information in evolution
M. Hledik, N.H. Barton, G. Tkačik, Proceedings of the National Academy of Sciences of the United States of America 119 (2022).
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M. Hledik, N.H. Barton, G. Tkačik, Proceedings of the National Academy of Sciences of the United States of America 119 (2022).
2022 | Published | Journal Article | IST-REx-ID: 11702 |

The "New Synthesis"
N.H. Barton, Proceedings of the National Academy of Sciences of the United States of America 119 (2022).
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N.H. Barton, Proceedings of the National Academy of Sciences of the United States of America 119 (2022).
2022 | Published | Journal Article | IST-REx-ID: 10604 |

Why did the Wolbachia transinfection cross the road? Drift, deterministic dynamics, and disease control
M. Turelli, N.H. Barton, Evolution Letters 6 (2022) 92–105.
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M. Turelli, N.H. Barton, Evolution Letters 6 (2022) 92–105.
2022 | Research Data Reference | IST-REx-ID: 11686 |

Wolbachia frequency data from: Why did the Wolbachia transinfection cross the road? Drift, deterministic dynamics and disease control
M. Turelli, N.H. Barton, (2022).
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M. Turelli, N.H. Barton, (2022).
2022 | Published | Journal Article | IST-REx-ID: 12234 |

Digest: On the origin of a possible hybrid species
S. Stankowski, Evolution 76 (2022) 2784–2785.
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S. Stankowski, Evolution 76 (2022) 2784–2785.
2022 | Published | Journal Article | IST-REx-ID: 11447 |

Relation between the number of peaks and the number of reciprocal sign epistatic interactions
R.J. Saona Urmeneta, F. Kondrashov, K. Khudiakova, Bulletin of Mathematical Biology 84 (2022).
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R.J. Saona Urmeneta, F. Kondrashov, K. Khudiakova, Bulletin of Mathematical Biology 84 (2022).
2022 | Published | Journal Article | IST-REx-ID: 11640 |

Using gridCoal to assess whether standard population genetic theory holds in the presence of spatio-temporal heterogeneity in population size
E. Szep, B. Trubenova, K. Csilléry, Molecular Ecology Resources 22 (2022) 2941–2955.
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E. Szep, B. Trubenova, K. Csilléry, Molecular Ecology Resources 22 (2022) 2941–2955.
2022 | Published | Journal Article | IST-REx-ID: 11546 |

Inversions and parallel evolution
A.M. Westram, R. Faria, K. Johannesson, R. Butlin, N.H. Barton, Philosophical Transactions of the Royal Society B: Biological Sciences 377 (2022).
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A.M. Westram, R. Faria, K. Johannesson, R. Butlin, N.H. Barton, Philosophical Transactions of the Royal Society B: Biological Sciences 377 (2022).
2022 | Published | Journal Article | IST-REx-ID: 12001 |

Differing associations between sex determination and sex-linked inversions in two ecotypes of Littorina saxatilis
K.E. Hearn, E.L. Koch, S. Stankowski, R.K. Butlin, R. Faria, K. Johannesson, A.M. Westram, Evolution Letters 6 (2022) 358–374.
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K.E. Hearn, E.L. Koch, S. Stankowski, R.K. Butlin, R. Faria, K. Johannesson, A.M. Westram, Evolution Letters 6 (2022) 358–374.
2022 | Published | Thesis | IST-REx-ID: 11388 |

The genetic basis of complex traits studied via analysis of evolve and resequence experiments
S. Belohlavy, The Genetic Basis of Complex Traits Studied via Analysis of Evolve and Resequence Experiments, Institute of Science and Technology Austria, 2022.
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S. Belohlavy, The Genetic Basis of Complex Traits Studied via Analysis of Evolve and Resequence Experiments, Institute of Science and Technology Austria, 2022.
2021 | Published | Book Chapter | IST-REx-ID: 14984
Hybrid Zones
S. Stankowski, D. Shipilina, A.M. Westram, in:, Encyclopedia of Life Sciences, Wiley, 2021.
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S. Stankowski, D. Shipilina, A.M. Westram, in:, Encyclopedia of Life Sciences, Wiley, 2021.
2021 | Published | Journal Article | IST-REx-ID: 10535 |

Dynamic maximum entropy provides accurate approximation of structured population dynamics
K. Bodova, E. Szep, N.H. Barton, PLoS Computational Biology 17 (2021).
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K. Bodova, E. Szep, N.H. Barton, PLoS Computational Biology 17 (2021).
2021 | Published | Journal Article | IST-REx-ID: 9816 |

Analysis of the specificity of a COVID-19 antigen test in the Slovak mass testing program
M. Hledik, J. Polechova, M. Beiglböck, A.N. Herdina, R. Strassl, M. Posch, PLoS ONE 16 (2021).
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M. Hledik, J. Polechova, M. Beiglböck, A.N. Herdina, R. Strassl, M. Posch, PLoS ONE 16 (2021).
2021 | Published | Journal Article | IST-REx-ID: 8743 |

Long-term cloud forest response to climate warming revealed by insect speciation history
A. Salces-Castellano, S. Stankowski, P. Arribas, J. Patino, D.N. Karger, R. Butlin, B.C. Emerson, Evolution 75 (2021) 231–244.
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A. Salces-Castellano, S. Stankowski, P. Arribas, J. Patino, D.N. Karger, R. Butlin, B.C. Emerson, Evolution 75 (2021) 231–244.
2021 | Published | Journal Article | IST-REx-ID: 9374 |

Homage to Felsenstein 1981, or why are there so few/many species?
R.K. Butlin, M.R. Servedio, C.M. Smadja, C. Bank, N.H. Barton, S.M. Flaxman, T. Giraud, R. Hopkins, E.L. Larson, M.E. Maan, J. Meier, R. Merrill, M.A.F. Noor, D. Ortiz‐Barrientos, A. Qvarnström, Evolution 75 (2021) 978–988.
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R.K. Butlin, M.R. Servedio, C.M. Smadja, C. Bank, N.H. Barton, S.M. Flaxman, T. Giraud, R. Hopkins, E.L. Larson, M.E. Maan, J. Meier, R. Merrill, M.A.F. Noor, D. Ortiz‐Barrientos, A. Qvarnström, Evolution 75 (2021) 978–988.
2021 | Published | Journal Article | IST-REx-ID: 9383 |

Defining the speciation continuum
S. Stankowski, M. Ravinet, Evolution 75 (2021) 1256–1273.
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S. Stankowski, M. Ravinet, Evolution 75 (2021) 1256–1273.
2021 | Published | Journal Article | IST-REx-ID: 9392 |

Quantifying the use of species concepts
S. Stankowski, M. Ravinet, Current Biology 31 (2021) R428–R429.
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S. Stankowski, M. Ravinet, Current Biology 31 (2021) R428–R429.
2021 | Published | Journal Article | IST-REx-ID: 8708 |

How do species barriers decay? Concordance and local introgression in mosaic hybrid zones of mussels
Simon, Alexis, How do species barriers decay? Concordance and local introgression in mosaic hybrid zones of mussels. Journal of Evolutionary Biology 34 (1). 2021
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Simon, Alexis, How do species barriers decay? Concordance and local introgression in mosaic hybrid zones of mussels. Journal of Evolutionary Biology 34 (1). 2021
2021 | Published | Journal Article | IST-REx-ID: 9100 |

Speciation in marine environments: Diving under the surface
Faria, Rui, Speciation in marine environments: Diving under the surface. Journal of Evolutionary Biology 34 (1). 2021
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Faria, Rui, Speciation in marine environments: Diving under the surface. Journal of Evolutionary Biology 34 (1). 2021
2021 | Published | Journal Article | IST-REx-ID: 9410 |

Adaptation at different points along antibiotic concentration gradients
M. Lagator, H. Uecker, P. Neve, Biology Letters 17 (2021).
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M. Lagator, H. Uecker, P. Neve, Biology Letters 17 (2021).
2021 | Published | Journal Article | IST-REx-ID: 8928 |

Genomic inference of complex domestication histories in three Solanaceae species
Arnoux, Stéphanie, Genomic inference of complex domestication histories in three Solanaceae species. Journal of Evolutionary Biology 34 (2). 2021
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Arnoux, Stéphanie, Genomic inference of complex domestication histories in three Solanaceae species. Journal of Evolutionary Biology 34 (2). 2021
2021 | Published | Journal Article | IST-REx-ID: 9394 |

Genetic variation for adaptive traits is associated with polymorphic inversions in Littorina saxatilis
E.L. Koch, H.E. Morales, J. Larsson, A.M. Westram, R. Faria, A.R. Lemmon, E.M. Lemmon, K. Johannesson, R.K. Butlin, Evolution Letters 5 (2021) 196–213.
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E.L. Koch, H.E. Morales, J. Larsson, A.M. Westram, R. Faria, A.R. Lemmon, E.M. Lemmon, K. Johannesson, R.K. Butlin, Evolution Letters 5 (2021) 196–213.
2021 | Published | Journal Article | IST-REx-ID: 9470 |

Unboxing mutations: Connecting mutation types with evolutionary consequences
E.L. Berdan, A. Blanckaert, T. Slotte, A. Suh, A.M. Westram, I. Fragata, Molecular Ecology 30 (2021) 2710–2723.
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E.L. Berdan, A. Blanckaert, T. Slotte, A. Suh, A.M. Westram, I. Fragata, Molecular Ecology 30 (2021) 2710–2723.
2021 | Research Data Reference | IST-REx-ID: 12987 |

Data from: Genetic variation for adaptive traits is associated with polymorphic inversions in Littorina saxatilis
E. Koch, H.E. Morales, J. Larsson, A.M. Westram, R. Faria, A.R. Lemmon, E.M. Lemmon, K. Johannesson, R.K. Butlin, (2021).
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E. Koch, H.E. Morales, J. Larsson, A.M. Westram, R. Faria, A.R. Lemmon, E.M. Lemmon, K. Johannesson, R.K. Butlin, (2021).
2021 | Published | Journal Article | IST-REx-ID: 9375 |

Haplotype tagging reveals parallel formation of hybrid races in two butterfly species
J.I. Meier, P.A. Salazar, M. Kučka, R.W. Davies, A. Dréau, I. Aldás, O.B. Power, N.J. Nadeau, J.R. Bridle, C. Rolian, N.H. Barton, W.O. McMillan, C.D. Jiggins, Y.F. Chan, Proceedings of the National Academy of Sciences of the United States of America 118 (2021).
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J.I. Meier, P.A. Salazar, M. Kučka, R.W. Davies, A. Dréau, I. Aldás, O.B. Power, N.J. Nadeau, J.R. Bridle, C. Rolian, N.H. Barton, W.O. McMillan, C.D. Jiggins, Y.F. Chan, Proceedings of the National Academy of Sciences of the United States of America 118 (2021).
2021 | Published | Journal Article | IST-REx-ID: 9168 |

The rates of introgression and barriers to genetic exchange between hybridizing species: Sex chromosomes vs autosomes
C. Fraisse, H. Sachdeva, Genetics 217 (2021).
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C. Fraisse, H. Sachdeva, Genetics 217 (2021).
2021 | Published | Journal Article | IST-REx-ID: 9119 |

DILS: Demographic inferences with linked selection by using ABC
C. Fraisse, I. Popovic, C. Mazoyer, B. Spataro, S. Delmotte, J. Romiguier, É. Loire, A. Simon, N. Galtier, L. Duret, N. Bierne, X. Vekemans, C. Roux, Molecular Ecology Resources 21 (2021) 2629–2644.
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C. Fraisse, I. Popovic, C. Mazoyer, B. Spataro, S. Delmotte, J. Romiguier, É. Loire, A. Simon, N. Galtier, L. Duret, N. Bierne, X. Vekemans, C. Roux, Molecular Ecology Resources 21 (2021) 2629–2644.
2021 | Published | Journal Article | IST-REx-ID: 9252 |

Polygenic local adaptation in metapopulations: A stochastic eco‐evolutionary model
E. Szep, H. Sachdeva, N.H. Barton, Evolution 75 (2021) 1030–1045.
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E. Szep, H. Sachdeva, N.H. Barton, Evolution 75 (2021) 1030–1045.
2021 | Research Data Reference | IST-REx-ID: 13062 |

Supplementary code for: Polygenic local adaptation in metapopulations: A stochastic eco-evolutionary model
E. Szep, H. Sachdeva, N.H. Barton, (2021).
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E. Szep, H. Sachdeva, N.H. Barton, (2021).
2020 | Published | Journal Article | IST-REx-ID: 7651 |

A developmentally descriptive method for quantifying shape in gastropod shells
J. Larsson, A.M. Westram, S. Bengmark, T. Lundh, R.K. Butlin, Journal of The Royal Society Interface 17 (2020).
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J. Larsson, A.M. Westram, S. Bengmark, T. Lundh, R.K. Butlin, Journal of The Royal Society Interface 17 (2020).
2020 | Published | Journal Article | IST-REx-ID: 8167 |

The evolution of strong reproductive isolation between sympatric intertidal snails
S. Stankowski, A.M. Westram, Z.B. Zagrodzka, I. Eyres, T. Broquet, K. Johannesson, R.K. Butlin, Philosophical Transactions of the Royal Society. Series B: Biological Sciences 375 (2020).
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S. Stankowski, A.M. Westram, Z.B. Zagrodzka, I. Eyres, T. Broquet, K. Johannesson, R.K. Butlin, Philosophical Transactions of the Royal Society. Series B: Biological Sciences 375 (2020).
2020 | Published | Journal Article | IST-REx-ID: 8169
Evolution of strong reproductive isolation in plants: Broad-scale patterns and lessons from a perennial model group
H. Shang, J. Hess, M. Pickup, D. Field, P.K. Ingvarsson, J. Liu, C. Lexer, Philosophical Transactions of the Royal Society. Series B: Biological Sciences 375 (2020).
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H. Shang, J. Hess, M. Pickup, D. Field, P.K. Ingvarsson, J. Liu, C. Lexer, Philosophical Transactions of the Royal Society. Series B: Biological Sciences 375 (2020).
2020 | Published | Thesis | IST-REx-ID: 8574 |

Local adaptation in metapopulations
E. Szep, Local Adaptation in Metapopulations, Institute of Science and Technology Austria, 2020.
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E. Szep, Local Adaptation in Metapopulations, Institute of Science and Technology Austria, 2020.
2020 | Published | Book Chapter | IST-REx-ID: 9123
Inversions and Evolution
A.M. Westram, R. Faria, R. Butlin, K. Johannesson, in:, ELS, Wiley, 2020.
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A.M. Westram, R. Faria, R. Butlin, K. Johannesson, in:, ELS, Wiley, 2020.
2020 | Research Data Reference | IST-REx-ID: 13073 |

How do species barriers decay? concordance and local introgression in mosaic hybrid zones of mussels
A. Simon, C. Fraisse, T. El Ayari, C. Liautard-Haag, P. Strelkov, J. Welch, N. Bierne, (2020).
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A. Simon, C. Fraisse, T. El Ayari, C. Liautard-Haag, P. Strelkov, J. Welch, N. Bierne, (2020).
2020 | Published | Journal Article | IST-REx-ID: 7205 |

Is embryo abortion a post-zygotic barrier to gene flow between Littorina ecotypes?
Johannesson, Kerstin, Is embryo abortion a post-zygotic barrier to gene flow between Littorina ecotypes?. Journal of Evolutionary Biology 33 (3). 2020
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Johannesson, Kerstin, Is embryo abortion a post-zygotic barrier to gene flow between Littorina ecotypes?. Journal of Evolutionary Biology 33 (3). 2020
2020 | Research Data Reference | IST-REx-ID: 9798 |

Simulation code for Fig S2 from the distribution of epistasis on simple fitness landscapes
C. Fraisse, J.J. Welch, (2020).
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C. Fraisse, J.J. Welch, (2020).
2020 | Research Data Reference | IST-REx-ID: 9799 |

Simulation code for Fig S1 from the distribution of epistasis on simple fitness landscapes
C. Fraisse, J.J. Welch, (2020).
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C. Fraisse, J.J. Welch, (2020).
2020 | Published | Journal Article | IST-REx-ID: 7236 |

Multiple metrics of latitudinal patterns in insect pollination and herbivory for a tropical‐temperate congener pair
C. Baskett, L. Schroeder, M.G. Weber, D.W. Schemske, Ecological Monographs 90 (2020).
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C. Baskett, L. Schroeder, M.G. Weber, D.W. Schemske, Ecological Monographs 90 (2020).
2020 | Research Data Reference | IST-REx-ID: 13065 |

VCF files of synonymous SNPs related to: Genomic inference of complex domestication histories in three Solanaceae species
S. Arnoux, C. Fraisse, C. Sauvage, (2020).
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S. Arnoux, C. Fraisse, C. Sauvage, (2020).
2020 | Published | Journal Article | IST-REx-ID: 7995 |

Assortative mating, sexual selection, and their consequences for gene flow in Littorina
Perini, Samuel, Assortative mating, sexual selection, and their consequences for gene flow in Littorina. Evolution 74 (7). 2020
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Perini, Samuel, Assortative mating, sexual selection, and their consequences for gene flow in Littorina. Evolution 74 (7). 2020
2020 | Published | Journal Article | IST-REx-ID: 8168 |

Towards the completion of speciation: The evolution of reproductive isolation beyond the first barriers
J. Kulmuni, R.K. Butlin, K. Lucek, V. Savolainen, A.M. Westram, Philosophical Transactions of the Royal Society. Series B: Biological Sciences 375 (2020).
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J. Kulmuni, R.K. Butlin, K. Lucek, V. Savolainen, A.M. Westram, Philosophical Transactions of the Royal Society. Series B: Biological Sciences 375 (2020).
2020 | Research Data Reference | IST-REx-ID: 8809 |

Data from: Assortative mating, sexual selection and their consequences for gene flow in Littorina
S. Perini, M. Rafajlovic, A.M. Westram, K. Johannesson, R. Butlin, (2020).
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S. Perini, M. Rafajlovic, A.M. Westram, K. Johannesson, R. Butlin, (2020).
2020 | Published | Journal Article | IST-REx-ID: 8112 |

On the completion of speciation
N.H. Barton, Philosophical Transactions of the Royal Society. Series B: Biological Sciences 375 (2020).
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N.H. Barton, Philosophical Transactions of the Royal Society. Series B: Biological Sciences 375 (2020).
2019 | Published | Journal Article | IST-REx-ID: 6022 |

Genetic dissection of assortative mating behavior
R.M. Merrill, P. Rastas, S.H. Martin, M.C. Melo Hurtado, S. Barker, J. Davey, W.O. Mcmillan, C.D. Jiggins, PLoS Biology 17 (2019).
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R.M. Merrill, P. Rastas, S.H. Martin, M.C. Melo Hurtado, S. Barker, J. Davey, W.O. Mcmillan, C.D. Jiggins, PLoS Biology 17 (2019).
2019 | Published | Journal Article | IST-REx-ID: 6090 |

Receptor crosstalk improves concentration sensing of multiple ligands
M. Carballo-Pacheco, J. Desponds, T. Gavrilchenko, A. Mayer, R. Prizak, G. Reddy, I. Nemenman, T. Mora, Physical Review E 99 (2019).
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M. Carballo-Pacheco, J. Desponds, T. Gavrilchenko, A. Mayer, R. Prizak, G. Reddy, I. Nemenman, T. Mora, Physical Review E 99 (2019).
2019 | Published | Journal Article | IST-REx-ID: 6095 |

Multiple chromosomal rearrangements in a hybrid zone between Littorina saxatilis ecotypes
R. Faria, P. Chaube, H.E. Morales, T. Larsson, A.R. Lemmon, E.M. Lemmon, M. Rafajlović, M. Panova, M. Ravinet, K. Johannesson, A.M. Westram, R.K. Butlin, Molecular Ecology 28 (2019) 1375–1393.
[Published Version]
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R. Faria, P. Chaube, H.E. Morales, T. Larsson, A.R. Lemmon, E.M. Lemmon, M. Rafajlović, M. Panova, M. Ravinet, K. Johannesson, A.M. Westram, R.K. Butlin, Molecular Ecology 28 (2019) 1375–1393.
2019 | Published | Book Chapter | IST-REx-ID: 8281
Mathematical models in population genetics
N.H. Barton, A. Etheridge, in:, D. Balding, I. Moltke, J. Marioni (Eds.), Handbook of Statistical Genomics, 4th ed., Wiley, 2019, pp. 115–144.
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N.H. Barton, A. Etheridge, in:, D. Balding, I. Moltke, J. Marioni (Eds.), Handbook of Statistical Genomics, 4th ed., Wiley, 2019, pp. 115–144.