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5735 Publications
2021 | Published | Conference Paper | IST-REx-ID: 10054 |

Faster algorithms for bounded liveness in graphs and game graphs
K. Chatterjee, M. Henzinger, S.S. Kale, A. Svozil, in:, 48th International Colloquium on Automata, Languages, and Programming, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2021.
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K. Chatterjee, M. Henzinger, S.S. Kale, A. Svozil, in:, 48th International Colloquium on Automata, Languages, and Programming, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2021.
2021 | Published | Conference Paper | IST-REx-ID: 10055 |

A Ramsey theorem for finite monoids
I.R. Jecker, in:, 38th International Symposium on Theoretical Aspects of Computer Science, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2021.
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I.R. Jecker, in:, 38th International Symposium on Theoretical Aspects of Computer Science, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2021.
2021 | Published | Conference Paper | IST-REx-ID: 10219 |

Brief announcement: Sinkless orientation is hard also in the supported LOCAL model
J. Korhonen, A. Paz, J. Rybicki, S. Schmid, J. Suomela, in:, 35th International Symposium on Distributed Computing, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2021.
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J. Korhonen, A. Paz, J. Rybicki, S. Schmid, J. Suomela, in:, 35th International Symposium on Distributed Computing, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2021.
2021 | Published | Conference Paper | IST-REx-ID: 10217 |

Lower bounds for shared-memory leader election under bounded write contention
D.-A. Alistarh, R. Gelashvili, G. Nadiradze, in:, 35th International Symposium on Distributed Computing, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2021.
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D.-A. Alistarh, R. Gelashvili, G. Nadiradze, in:, 35th International Symposium on Distributed Computing, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2021.
2021 | Published | Conference Paper | IST-REx-ID: 10216 |

Brief announcement: Non-blocking dynamic unbounded graphs with worst-case amortized bounds
B. Chatterjee, S. Peri, M. Sa, in:, 35th International Symposium on Distributed Computing, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2021.
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B. Chatterjee, S. Peri, M. Sa, in:, 35th International Symposium on Distributed Computing, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2021.
2021 | Published | Journal Article | IST-REx-ID: 9375 |

Haplotype tagging reveals parallel formation of hybrid races in two butterfly species
J.I. Meier, P.A. Salazar, M. Kučka, R.W. Davies, A. Dréau, I. Aldás, O.B. Power, N.J. Nadeau, J.R. Bridle, C. Rolian, N.H. Barton, W.O. McMillan, C.D. Jiggins, Y.F. Chan, Proceedings of the National Academy of Sciences of the United States of America 118 (2021).
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J.I. Meier, P.A. Salazar, M. Kučka, R.W. Davies, A. Dréau, I. Aldás, O.B. Power, N.J. Nadeau, J.R. Bridle, C. Rolian, N.H. Barton, W.O. McMillan, C.D. Jiggins, Y.F. Chan, Proceedings of the National Academy of Sciences of the United States of America 118 (2021).
2021 | Published | Journal Article | IST-REx-ID: 9257 |

Designing self-assembling kinetics with differentiable statistical physics models
C.P. Goodrich, E.M. King, S.S. Schoenholz, E.D. Cubuk, M.P. Brenner, Proceedings of the National Academy of Sciences of the United States of America 118 (2021).
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C.P. Goodrich, E.M. King, S.S. Schoenholz, E.D. Cubuk, M.P. Brenner, Proceedings of the National Academy of Sciences of the United States of America 118 (2021).
2021 | Published | Journal Article | IST-REx-ID: 8993 |

Naphthylphthalamic acid associates with and inhibits PIN auxin transporters
L. Abas, M. Kolb, J. Stadlmann, D.P. Janacek, K. Lukic, C. Schwechheimer, L.A. Sazanov, L. Mach, J. Friml, U.Z. Hammes, Proceedings of the National Academy of Sciences of the United States of America 118 (2021).
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L. Abas, M. Kolb, J. Stadlmann, D.P. Janacek, K. Lukic, C. Schwechheimer, L.A. Sazanov, L. Mach, J. Friml, U.Z. Hammes, Proceedings of the National Academy of Sciences of the United States of America 118 (2021).
2021 | Published | Conference Paper | IST-REx-ID: 9592 |

Massively winning configurations in the convex grabbing game on the plane
M. Dvorak, S. Nicholson, in:, Proceedings of the 33rd Canadian Conference on Computational Geometry, Canadian Conference on Computational Geometry, 2021.
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M. Dvorak, S. Nicholson, in:, Proceedings of the 33rd Canadian Conference on Computational Geometry, Canadian Conference on Computational Geometry, 2021.
2021 | Published | Journal Article | IST-REx-ID: 10565 |

Minimally invasive protocols and quantification for microglia-mediated perineuronal net disassembly in mouse brain
A. Venturino, S. Siegert, STAR Protocols 2 (2021).
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A. Venturino, S. Siegert, STAR Protocols 2 (2021).
2021 | Published | Journal Article | IST-REx-ID: 10573 |

Extracellular hyaluronate pressure shaped by cellular tethers drives tissue morphogenesis
A. Munjal, E.B. Hannezo, T.Y.C. Tsai, T.J. Mitchison, S.G. Megason, Cell 184 (2021) 6313–6325.e18.
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A. Munjal, E.B. Hannezo, T.Y.C. Tsai, T.J. Mitchison, S.G. Megason, Cell 184 (2021) 6313–6325.e18.
2021 | Published | Journal Article | IST-REx-ID: 10575 |

On the dynamic slip boundary condition for Navier-Stokes-like problems
A. Abbatiello, M. Bulíček, E. Maringová, Mathematical Models and Methods in Applied Sciences 31 (2021) 2165–2212.
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A. Abbatiello, M. Bulíček, E. Maringová, Mathematical Models and Methods in Applied Sciences 31 (2021) 2165–2212.
2021 | Published | Journal Article | IST-REx-ID: 9928 |

Geometric superinductance qubits: Controlling phase delocalization across a single Josephson junction
M. Peruzzo, F. Hassani, G. Szep, A. Trioni, E. Redchenko, M. Zemlicka, J.M. Fink, PRX Quantum 2 (2021) 040341.
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M. Peruzzo, F. Hassani, G. Szep, A. Trioni, E. Redchenko, M. Zemlicka, J.M. Fink, PRX Quantum 2 (2021) 040341.
2021 | Research Data Reference | IST-REx-ID: 13057 |

Geometric superinductance qubits: Controlling phase delocalization across a single Josephson junction
M. Peruzzo, F. Hassani, G. Szep, A. Trioni, E. Redchenko, M. Zemlicka, J.M. Fink, (2021).
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M. Peruzzo, F. Hassani, G. Szep, A. Trioni, E. Redchenko, M. Zemlicka, J.M. Fink, (2021).
2021 | Published | Thesis | IST-REx-ID: 10030 |

Discrete-to-continuum limits of transport problems and gradient flows in the space of measures
L. Portinale, Discrete-to-Continuum Limits of Transport Problems and Gradient Flows in the Space of Measures, Institute of Science and Technology Austria, 2021.
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L. Portinale, Discrete-to-Continuum Limits of Transport Problems and Gradient Flows in the Space of Measures, Institute of Science and Technology Austria, 2021.
2021 | Draft | Preprint | IST-REx-ID: 9792 |

A non-commutative entropic optimal transport approach to quantum composite systems at positive temperature
D. Feliciangeli, A. Gerolin, L. Portinale, ArXiv (n.d.).
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D. Feliciangeli, A. Gerolin, L. Portinale, ArXiv (n.d.).
2021 | Published | Thesis | IST-REx-ID: 9920 |

Geometric superinductors and their applications in circuit quantum electrodynamics
M. Peruzzo, Geometric Superinductors and Their Applications in Circuit Quantum Electrodynamics, Institute of Science and Technology Austria, 2021.
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M. Peruzzo, Geometric Superinductors and Their Applications in Circuit Quantum Electrodynamics, Institute of Science and Technology Austria, 2021.
2021 | Published | Conference Paper | IST-REx-ID: 10668 |

On-off center-surround receptive fields for accurate and robust image classification
Z. Babaiee, R. Hasani, M. Lechner, D. Rus, R. Grosu, in:, Proceedings of the 38th International Conference on Machine Learning, ML Research Press, 2021, pp. 478–489.
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Z. Babaiee, R. Hasani, M. Lechner, D. Rus, R. Grosu, in:, Proceedings of the 38th International Conference on Machine Learning, ML Research Press, 2021, pp. 478–489.
2021 | Published | Thesis | IST-REx-ID: 10199 |

Improved verification techniques for concurrent systems
V. Toman, Improved Verification Techniques for Concurrent Systems, Institute of Science and Technology Austria, 2021.
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V. Toman, Improved Verification Techniques for Concurrent Systems, Institute of Science and Technology Austria, 2021.
2021 | Published | Journal Article | IST-REx-ID: 9903 |

Area-law entangled eigenstates from nullspaces of local Hamiltonians
V. Karle, M. Serbyn, A. Michailidis, Physical Review Letters 127 (2021).
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V. Karle, M. Serbyn, A. Michailidis, Physical Review Letters 127 (2021).
2021 | Published | Thesis | IST-REx-ID: 10429 |

On achieving scalability through relaxation
G. Nadiradze, On Achieving Scalability through Relaxation, Institute of Science and Technology Austria, 2021.
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G. Nadiradze, On Achieving Scalability through Relaxation, Institute of Science and Technology Austria, 2021.
2021 | Published | Journal Article | IST-REx-ID: 10223 |

Cell surface and intracellular auxin signalling for H+ fluxes in root growth
Li, Lanxin, Cell surface and intracellular auxin signalling for H<sup>+</sup> fluxes in root growth. Nature 599 (7884). 2021
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Li, Lanxin, Cell surface and intracellular auxin signalling for H<sup>+</sup> fluxes in root growth. Nature 599 (7884). 2021
2021 | Published | Journal Article | IST-REx-ID: 9603 |

A genome-wide library of MADM mice for single-cell genetic mosaic analysis
X. Contreras, N. Amberg, A. Davaatseren, A.H. Hansen, J. Sonntag, L. Andersen, T. Bernthaler, C. Streicher, A.-M. Heger, R.L. Johnson, L.A. Schwarz, L. Luo, T. Rülicke, S. Hippenmeyer, Cell Reports 35 (2021).
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X. Contreras, N. Amberg, A. Davaatseren, A.H. Hansen, J. Sonntag, L. Andersen, T. Bernthaler, C. Streicher, A.-M. Heger, R.L. Johnson, L.A. Schwarz, L. Luo, T. Rülicke, S. Hippenmeyer, Cell Reports 35 (2021).
2021 | Published | Journal Article | IST-REx-ID: 9778 |

Transsynaptic modulation of presynaptic short-term plasticity in hippocampal mossy fiber synapses
D.H. Vandael, Y. Okamoto, P.M. Jonas, Nature Communications 12 (2021).
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D.H. Vandael, Y. Okamoto, P.M. Jonas, Nature Communications 12 (2021).
2021 | Published | Journal Article | IST-REx-ID: 9906 |

LINC01133 inhibits invasion and promotes proliferation in an endometriosis epithelial cell line
I. Yotova, Q.J. Hudson, F. Pauler, K. Proestling, I. Haslinger, L. Kuessel, A. Perricos, H. Husslein, R. Wenzl, International Journal of Molecular Sciences 22 (2021).
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I. Yotova, Q.J. Hudson, F. Pauler, K. Proestling, I. Haslinger, L. Kuessel, A. Perricos, H. Husslein, R. Wenzl, International Journal of Molecular Sciences 22 (2021).
2021 | Published | Journal Article | IST-REx-ID: 9908 |

Diversity of modes of reproduction and sex determination systems in invertebrates, and the putative contribution of genetic conflict
M.A.L. Picard, B. Vicoso, S. Bertrand, H. Escriva, Genes 12 (2021).
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M.A.L. Picard, B. Vicoso, S. Bertrand, H. Escriva, Genes 12 (2021).
2021 | Published | Journal Article | IST-REx-ID: 8997 |

Minimal biophysical model of combined antibiotic action
B. Kavcic, G. Tkačik, M.T. Bollenbach, PLOS Computational Biology 17 (2021).
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B. Kavcic, G. Tkačik, M.T. Bollenbach, PLOS Computational Biology 17 (2021).
2021 | Published | Journal Article | IST-REx-ID: 9101 |

Early life differences in behavioral predispositions in two Alligatoridae species
S.A. Reber, J. Oh, J. Janisch, C. Stevenson, S. Foggett, A. Wilkinson, Animal Cognition 24 (2021) 753–764.
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S.A. Reber, J. Oh, J. Janisch, C. Stevenson, S. Foggett, A. Wilkinson, Animal Cognition 24 (2021) 753–764.
2021 | Published | Journal Article | IST-REx-ID: 9020 |

Dynamics of ion channels via non-hermitian quantum mechanics
T. Gulden, A. Kamenev, Entropy 23 (2021).
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T. Gulden, A. Kamenev, Entropy 23 (2021).
2021 | Published | Journal Article | IST-REx-ID: 9246 |

Derivation of the Landau–Pekar equations in a many-body mean-field limit
N.K. Leopold, D.J. Mitrouskas, R. Seiringer, Archive for Rational Mechanics and Analysis 240 (2021) 383–417.
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N.K. Leopold, D.J. Mitrouskas, R. Seiringer, Archive for Rational Mechanics and Analysis 240 (2021) 383–417.
2021 | Published | Journal Article | IST-REx-ID: 9206 |

Synthesis, bottom up assembly and thermoelectric properties of Sb-doped PbS nanocrystal building blocks
D. Cadavid, K. Wei, Y. Liu, Y. Zhang, M. Li, A. Genç, T. Berestok, M. Ibáñez, A. Shavel, G.S. Nolas, A. Cabot, Materials 14 (2021).
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D. Cadavid, K. Wei, Y. Liu, Y. Zhang, M. Li, A. Genç, T. Berestok, M. Ibáñez, A. Shavel, G.S. Nolas, A. Cabot, Materials 14 (2021).
2021 | Published | Journal Article | IST-REx-ID: 9168 |

The rates of introgression and barriers to genetic exchange between hybridizing species: Sex chromosomes vs autosomes
C. Fraisse, H. Sachdeva, Genetics 217 (2021).
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C. Fraisse, H. Sachdeva, Genetics 217 (2021).
2021 | Published | Journal Article | IST-REx-ID: 9119 |

DILS: Demographic inferences with linked selection by using ABC
C. Fraisse, I. Popovic, C. Mazoyer, B. Spataro, S. Delmotte, J. Romiguier, É. Loire, A. Simon, N. Galtier, L. Duret, N. Bierne, X. Vekemans, C. Roux, Molecular Ecology Resources 21 (2021) 2629–2644.
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C. Fraisse, I. Popovic, C. Mazoyer, B. Spataro, S. Delmotte, J. Romiguier, É. Loire, A. Simon, N. Galtier, L. Duret, N. Bierne, X. Vekemans, C. Roux, Molecular Ecology Resources 21 (2021) 2629–2644.
2021 | Research Data Reference | IST-REx-ID: 13072 |

Blood-based epigenome-wide analyses of cognitive abilities
McCartney DL, Hillary RF, Conole EL, Trejo Banos D, Gadd DA, Walker RM, Nangle C, Flaig R, Campbell A, Murray AD, Munoz Maniega S, del C Valdes-Hernandez M, Harris MA, Bastin ME, Wardlaw JM, Harris SE, Porteous DJ, Tucker-Drob EM, McIntosh AM, Evans KL, Deary IJ, Cox SR, Robinson MR, Marioni RE. 2021. Blood-based epigenome-wide analyses of cognitive abilities, Zenodo, 10.5281/ZENODO.5794028.
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McCartney DL, Hillary RF, Conole EL, Trejo Banos D, Gadd DA, Walker RM, Nangle C, Flaig R, Campbell A, Murray AD, Munoz Maniega S, del C Valdes-Hernandez M, Harris MA, Bastin ME, Wardlaw JM, Harris SE, Porteous DJ, Tucker-Drob EM, McIntosh AM, Evans KL, Deary IJ, Cox SR, Robinson MR, Marioni RE. 2021. Blood-based epigenome-wide analyses of cognitive abilities, Zenodo, 10.5281/ZENODO.5794028.
2021 | Research Data Reference | IST-REx-ID: 13068 |

Spatiotemporal dynamics of self-organized branching in pancreas-derived organoids
S. Randriamanantsoa, A. Papargyriou, C. Maurer, K. Peschke, M. Schuster, G. Zecchin, K. Steiger, R. Öllinger, D. Saur, C. Scheel, R. Rad, E.B. Hannezo, M. Reichert, A.R. Bausch, (2021).
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S. Randriamanantsoa, A. Papargyriou, C. Maurer, K. Peschke, M. Schuster, G. Zecchin, K. Steiger, R. Öllinger, D. Saur, C. Scheel, R. Rad, E.B. Hannezo, M. Reichert, A.R. Bausch, (2021).
2021 | Published | Journal Article | IST-REx-ID: 8582 |

Cellular requirements for PIN polar cargo clustering in Arabidopsis thaliana
H. Li, D. von Wangenheim, X. Zhang, S. Tan, N. Darwish-Miranda, S. Naramoto, K.T. Wabnik, R. de Rycke, W. Kaufmann, D.J. Gütl, R. Tejos, P. Grones, M. Ke, X. Chen, J. Dettmer, J. Friml, New Phytologist 229 (2021) 351–369.
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H. Li, D. von Wangenheim, X. Zhang, S. Tan, N. Darwish-Miranda, S. Naramoto, K.T. Wabnik, R. de Rycke, W. Kaufmann, D.J. Gütl, R. Tejos, P. Grones, M. Ke, X. Chen, J. Dettmer, J. Friml, New Phytologist 229 (2021) 351–369.
2021 | Published | Journal Article | IST-REx-ID: 9973 |

Complete gradient estimates of quantum Markov semigroups
M. Wirth, H. Zhang, Communications in Mathematical Physics 387 (2021) 761–791.
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M. Wirth, H. Zhang, Communications in Mathematical Physics 387 (2021) 761–791.
2021 | Published | Journal Article | IST-REx-ID: 8910 |

Nontopological zero-bias peaks in full-shell nanowires induced by flux-tunable Andreev states
M. Valentini, F. Peñaranda, A.C. Hofmann, M. Brauns, R. Hauschild, P. Krogstrup, P. San-Jose, E. Prada, R. Aguado, G. Katsaros, Science 373 (2021).
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M. Valentini, F. Peñaranda, A.C. Hofmann, M. Brauns, R. Hauschild, P. Krogstrup, P. San-Jose, E. Prada, R. Aguado, G. Katsaros, Science 373 (2021).
2021 | Published | Journal Article | IST-REx-ID: 8544 |

GluD2- and Cbln1-mediated competitive synaptogenesis shapes the dendritic arbors of cerebellar Purkinje cells
Y.H. Takeo, S.A. Shuster, L. Jiang, M. Hu, D.J. Luginbuhl, T. Rülicke, X. Contreras, S. Hippenmeyer, M.J. Wagner, S. Ganguli, L. Luo, Neuron 109 (2021) P629–644.E8.
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Y.H. Takeo, S.A. Shuster, L. Jiang, M. Hu, D.J. Luginbuhl, T. Rülicke, X. Contreras, S. Hippenmeyer, M.J. Wagner, S. Ganguli, L. Luo, Neuron 109 (2021) P629–644.E8.
2021 | Research Data | IST-REx-ID: 9389 |

Research data for "Non-topological zero bias peaks in full-shell nanowires induced by flux tunable Andreev states"
M. Valentini, (2021).
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M. Valentini, (2021).
2021 | Published | Journal Article | IST-REx-ID: 9329 |

MOD: A novel machine-learning optimal-filtering method for accurate and efficient detection of subthreshold synaptic events in vivo
X. Zhang, A. Schlögl, D.H. Vandael, P.M. Jonas, Journal of Neuroscience Methods 357 (2021).
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X. Zhang, A. Schlögl, D.H. Vandael, P.M. Jonas, Journal of Neuroscience Methods 357 (2021).
2021 | Published | Journal Article | IST-REx-ID: 9283 |

Local genetic context shapes the function of a gene regulatory network
A.A. Nagy-Staron, K. Tomasek, C. Caruso Carter, E. Sonnleitner, B. Kavcic, T. Paixão, C.C. Guet, ELife 10 (2021).
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A.A. Nagy-Staron, K. Tomasek, C. Caruso Carter, E. Sonnleitner, B. Kavcic, T. Paixão, C.C. Guet, ELife 10 (2021).
2021 | Published | Journal Article | IST-REx-ID: 9252 |

Polygenic local adaptation in metapopulations: A stochastic eco‐evolutionary model
E. Szep, H. Sachdeva, N.H. Barton, Evolution 75 (2021) 1030–1045.
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E. Szep, H. Sachdeva, N.H. Barton, Evolution 75 (2021) 1030–1045.
2021 | Published | Journal Article | IST-REx-ID: 9332 |

Pickle recruits retinoblastoma related 1 to control lateral root formation in arabidopsis
K. Ötvös, P. Miskolczi, P. Marhavý, A. Cruz-Ramírez, E. Benková, S. Robert, L. Bakó, International Journal of Molecular Sciences 22 (2021).
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K. Ötvös, P. Miskolczi, P. Marhavý, A. Cruz-Ramírez, E. Benková, S. Robert, L. Bakó, International Journal of Molecular Sciences 22 (2021).
2021 | Published | Journal Article | IST-REx-ID: 9317 |

The multi-cover persistence of Euclidean balls
H. Edelsbrunner, G.F. Osang, Discrete and Computational Geometry 65 (2021) 1296–1313.
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H. Edelsbrunner, G.F. Osang, Discrete and Computational Geometry 65 (2021) 1296–1313.
2021 | Published | Journal Article | IST-REx-ID: 9256 |

Free energy asymptotics of the quantum Heisenberg spin chain
M.M. Napiórkowski, R. Seiringer, Letters in Mathematical Physics 111 (2021).
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M.M. Napiórkowski, R. Seiringer, Letters in Mathematical Physics 111 (2021).
2021 | Research Data Reference | IST-REx-ID: 13062 |

Supplementary code for: Polygenic local adaptation in metapopulations: A stochastic eco-evolutionary model
E. Szep, H. Sachdeva, N.H. Barton, (2021).
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E. Szep, H. Sachdeva, N.H. Barton, (2021).
2021 | Published | Journal Article | IST-REx-ID: 9363 |

Optogenetic delivery of trophic signals in a genetic model of Parkinson's disease
Á. Inglés Prieto, N. Furthmann, S.H. Crossman, A.M. Tichy, N. Hoyer, M. Petersen, V. Zheden, J. Bicher, E. Gschaider-Reichhart, A. György, D.E. Siekhaus, P. Soba, K.F. Winklhofer, H.L. Janovjak, PLoS Genetics 17 (2021) e1009479.
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Á. Inglés Prieto, N. Furthmann, S.H. Crossman, A.M. Tichy, N. Hoyer, M. Petersen, V. Zheden, J. Bicher, E. Gschaider-Reichhart, A. György, D.E. Siekhaus, P. Soba, K.F. Winklhofer, H.L. Janovjak, PLoS Genetics 17 (2021) e1009479.
2021 | Published | Journal Article | IST-REx-ID: 10858 |

Enhanced thermoelectric performance of n-type Bi2Se3 nanosheets through Sn doping
M. Li, Y. Zhang, T. Zhang, Y. Zuo, K. Xiao, J. Arbiol, J. Llorca, Y. Liu, A. Cabot, Nanomaterials 11 (2021).
[Published Version]
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M. Li, Y. Zhang, T. Zhang, Y. Zuo, K. Xiao, J. Arbiol, J. Llorca, Y. Liu, A. Cabot, Nanomaterials 11 (2021).
2021 | Published | Journal Article | IST-REx-ID: 9381 |

Mistakes can stabilise the dynamics of rock-paper-scissors games
M. Kleshnina, S.S. Streipert, J.A. Filar, K. Chatterjee, PLoS Computational Biology 17 (2021).
[Published Version]
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M. Kleshnina, S.S. Streipert, J.A. Filar, K. Chatterjee, PLoS Computational Biology 17 (2021).