Samuel Pastva
9 Publications
2025 | Published | Journal Article | IST-REx-ID: 19796 | 
Trinh VG, Park KH, Pastva S, Rozum JC. Mapping the attractor landscape of Boolean networks with biobalm. Bioinformatics. 2025;41(5). doi:10.1093/bioinformatics/btaf280
[Published Version]
View
| Files available
| DOI
| PubMed | Europe PMC
2025 | Published | Journal Article | IST-REx-ID: 19854 |
Pastva S, Park KH, Huvar O, Rozum JC, Albert R. An open problem: Why are motif-avoidant attractors so rare in asynchronous Boolean networks? Journal of Mathematical Biology. 2025;91. doi:10.1007/s00285-025-02235-8
[Published Version]
View
| Files available
| DOI
| arXiv
2024 | Published | Conference Paper | IST-REx-ID: 15321 |
Trinh G, Benhamou B, Pastva S, Soliman S. Scalable enumeration of trap spaces in boolean networks via answer set programming. In: Proceedings of the 38th AAAI Conference on Artificial Intelligence. Vol 38. Association for the Advancement of Artificial Intelligence; 2024:10714-10722. doi:10.1609/aaai.v38i9.28943
[Published Version]
View
| DOI
| Download Published Version (ext.)
2024 | Published | Conference Paper | IST-REx-ID: 18177
Beneš N, Brim L, Huvar O, Pastva S, Šafránek D. BNClassifier: Classifying boolean models by dynamic properties. In: Computational Methods in Systems Biology. Vol 14971. Springer Nature; 2024:19-26. doi:10.1007/978-3-031-71671-3_2
View
| DOI
2024 | Research Data Reference | IST-REx-ID: 19800 |
trinh VG, Park KH, Pastva S, Rozum J. Mapping the attractor landscape of Boolean networks. 2024. doi:10.5281/ZENODO.13854759
[Published Version]
View
| Files available
| DOI
| Download Published Version (ext.)
2023 | Published | Conference Paper | IST-REx-ID: 14411 |
Beneš N, Brim L, Pastva S, Šafránek D, Šmijáková E. Phenotype control of partially specified boolean networks. In: 21st International Conference on Computational Methods in Systems Biology. Vol 14137. Springer Nature; 2023:18-35. doi:10.1007/978-3-031-42697-1_2
[Submitted Version]
View
| Files available
| DOI
2023 | Published | Journal Article | IST-REx-ID: 12876 |
Beneš N, Brim L, Huvar O, Pastva S, Šafránek D. Boolean network sketches: A unifying framework for logical model inference. Bioinformatics. 2023;39(4). doi:10.1093/bioinformatics/btad158
[Published Version]
View
| Files available
| DOI
| WoS
| PubMed | Europe PMC
2023 | Published | Journal Article | IST-REx-ID: 13263 |
Trinh VG, Benhamou B, Henzinger TA, Pastva S. Trap spaces of multi-valued networks: Definition, computation, and applications. Bioinformatics. 2023;39(Supplement_1):i513-i522. doi:10.1093/bioinformatics/btad262
[Published Version]
View
| Files available
| DOI
| WoS
| PubMed | Europe PMC
2023 | Published | Conference Paper | IST-REx-ID: 14718 |
Pastva S, Henzinger TA. Binary decision diagrams on modern hardware. In: Proceedings of the 23rd Conference on Formal Methods in Computer-Aided Design. TU Vienna Academic Press; 2023:122-131. doi:10.34727/2023/isbn.978-3-85448-060-0_20
[Published Version]
View
| Files available
| DOI
Grants
9 Publications
2025 | Published | Journal Article | IST-REx-ID: 19796 |
Trinh VG, Park KH, Pastva S, Rozum JC. Mapping the attractor landscape of Boolean networks with biobalm. Bioinformatics. 2025;41(5). doi:10.1093/bioinformatics/btaf280
[Published Version]
View
| Files available
| DOI
| PubMed | Europe PMC
2025 | Published | Journal Article | IST-REx-ID: 19854 |
Pastva S, Park KH, Huvar O, Rozum JC, Albert R. An open problem: Why are motif-avoidant attractors so rare in asynchronous Boolean networks? Journal of Mathematical Biology. 2025;91. doi:10.1007/s00285-025-02235-8
[Published Version]
View
| Files available
| DOI
| arXiv
2024 | Published | Conference Paper | IST-REx-ID: 15321 |
Trinh G, Benhamou B, Pastva S, Soliman S. Scalable enumeration of trap spaces in boolean networks via answer set programming. In: Proceedings of the 38th AAAI Conference on Artificial Intelligence. Vol 38. Association for the Advancement of Artificial Intelligence; 2024:10714-10722. doi:10.1609/aaai.v38i9.28943
[Published Version]
View
| DOI
| Download Published Version (ext.)
2024 | Published | Conference Paper | IST-REx-ID: 18177
Beneš N, Brim L, Huvar O, Pastva S, Šafránek D. BNClassifier: Classifying boolean models by dynamic properties. In: Computational Methods in Systems Biology. Vol 14971. Springer Nature; 2024:19-26. doi:10.1007/978-3-031-71671-3_2
View
| DOI
2024 | Research Data Reference | IST-REx-ID: 19800 |
trinh VG, Park KH, Pastva S, Rozum J. Mapping the attractor landscape of Boolean networks. 2024. doi:10.5281/ZENODO.13854759
[Published Version]
View
| Files available
| DOI
| Download Published Version (ext.)
2023 | Published | Conference Paper | IST-REx-ID: 14411 |
Beneš N, Brim L, Pastva S, Šafránek D, Šmijáková E. Phenotype control of partially specified boolean networks. In: 21st International Conference on Computational Methods in Systems Biology. Vol 14137. Springer Nature; 2023:18-35. doi:10.1007/978-3-031-42697-1_2
[Submitted Version]
View
| Files available
| DOI
2023 | Published | Journal Article | IST-REx-ID: 12876 |
Beneš N, Brim L, Huvar O, Pastva S, Šafránek D. Boolean network sketches: A unifying framework for logical model inference. Bioinformatics. 2023;39(4). doi:10.1093/bioinformatics/btad158
[Published Version]
View
| Files available
| DOI
| WoS
| PubMed | Europe PMC
2023 | Published | Journal Article | IST-REx-ID: 13263 |
Trinh VG, Benhamou B, Henzinger TA, Pastva S. Trap spaces of multi-valued networks: Definition, computation, and applications. Bioinformatics. 2023;39(Supplement_1):i513-i522. doi:10.1093/bioinformatics/btad262
[Published Version]
View
| Files available
| DOI
| WoS
| PubMed | Europe PMC
2023 | Published | Conference Paper | IST-REx-ID: 14718 |
Pastva S, Henzinger TA. Binary decision diagrams on modern hardware. In: Proceedings of the 23rd Conference on Formal Methods in Computer-Aided Design. TU Vienna Academic Press; 2023:122-131. doi:10.34727/2023/isbn.978-3-85448-060-0_20
[Published Version]
View
| Files available
| DOI