Caroline Uhler

Uhler Group

26 Publications

Mark all

[26]
2023 | Epub ahead of print | Conference Paper | IST-REx-ID: 14974 | OA
Zhang, C., Janzing, D., van der Schaar, M., Locatello, F., Spirtes, P., Zhang, K., … Uhler, C. (2023). Causality in the time of LLMs: Round table discussion results of CLeaR 2023. In 2nd Conference on Causal Learning and Reasoning. Tübingen, Germany.
[Submitted Version] View | Files available
 
[25]
2018 | Published | Journal Article | IST-REx-ID: 1092 | OA
Mohammadi, F., Uhler, C., Wang, C., & Yu, J. (2018). Generalized permutohedra from probabilistic graphical models. SIAM Journal on Discrete Mathematics. SIAM. https://doi.org/10.1137/16M107894X
[Preprint] View | DOI | Download Preprint (ext.)
 
[24]
2018 | Published | Journal Article | IST-REx-ID: 2015 | OA
Raskutti, G., & Uhler, C. (2018). Learning directed acyclic graphs based on sparsest permutations. STAT. Wiley. https://doi.org/10.1002/sta4.183
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 
[23]
2017 | Published | Journal Article | IST-REx-ID: 2016 | OA
Martin Del Campo Sanchez, A., Cepeda Humerez, S. A., & Uhler, C. (2017). Exact goodness-of-fit testing for the Ising model. Scandinavian Journal of Statistics. Wiley-Blackwell. https://doi.org/10.1111/sjos.12251
[Preprint] View | Files available | DOI | Download Preprint (ext.) | WoS | arXiv
 
[22]
2017 | Published | Journal Article | IST-REx-ID: 1089 | OA
Fallat, S., Lauritzen, S., Sadeghi, K., Uhler, C., Wermuth, N., & Zwiernik, P. (2017). Total positivity in Markov structures. Annals of Statistics. Institute of Mathematical Statistics. https://doi.org/10.1214/16-AOS1478
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS
 
[21]
2017 | Published | Journal Article | IST-REx-ID: 1208 | OA
Zwiernik, P., Uhler, C., & Richards, D. (2017). Maximum likelihood estimation for linear Gaussian covariance models. Journal of the Royal Statistical Society. Series B: Statistical Methodology. Wiley-Blackwell. https://doi.org/10.1111/rssb.12217
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS
 
[20]
2017 | Published | Journal Article | IST-REx-ID: 698 | OA
Wang, Y., Nagarajan, M., Uhler, C., & Shivashankar, G. (2017). Orientation and repositioning of chromosomes correlate with cell geometry dependent gene expression. Molecular Biology of the Cell. American Society for Cell Biology. https://doi.org/10.1091/mbc.E16-12-0825
[Published Version] View | Files available | DOI
 
[19]
2016 | Published | Journal Article | IST-REx-ID: 1088
Uhler, C., & Shivashankar, G. V. (2016). Geometric control and modeling of genome reprogramming. BioArchitecture. Taylor & Francis. https://doi.org/10.1080/19490992.2016.1201620
View | DOI
 
[18]
2016 | Published | Journal Article | IST-REx-ID: 1293 | OA
Solus, L. T., Uhler, C., & Yoshida, R. (2016). Extremal positive semidefinite matrices whose sparsity pattern is given by graphs without K5 minors. Linear Algebra and Its Applications. Elsevier. https://doi.org/10.1016/j.laa.2016.07.026
[Preprint] View | DOI | Download Preprint (ext.)
 
[17]
2016 | Published | Journal Article | IST-REx-ID: 1480 | OA
Michałek, M., Sturmfels, B., Uhler, C., & Zwiernik, P. (2016). Exponential varieties. Proceedings of the London Mathematical Society. Oxford University Press. https://doi.org/10.1112/plms/pdv066
[Preprint] View | DOI | Download Preprint (ext.)
 
[16]
2015 | Published | Journal Article | IST-REx-ID: 2014 | OA
Klimova, A., Uhler, C., & Rudas, T. (2015). Faithfulness and learning hypergraphs from discrete distributions. Computational Statistics & Data Analysis. Elsevier. https://doi.org/10.1016/j.csda.2015.01.017
[Preprint] View | DOI | Download Preprint (ext.)
 
[15]
2014 | Published | Conference Paper | IST-REx-ID: 2012 | OA
Iglesias Ham, M., Kerber, M., & Uhler, C. (2014). Sphere packing with limited overlap. In 26th Canadian Conference on Computational Geometry (pp. 155–161). Halifax, Canada: Canadian Conference on Computational Geometry.
[Preprint] View | Download Preprint (ext.) | arXiv
 
[14]
2014 | Published | Journal Article | IST-REx-ID: 2011 | OA
Yu, F., Fienberg, S., Slaković, A., & Uhler, C. (2014). Scalable privacy-preserving data sharing methodology for genome-wide association studies. Journal of Biomedical Informatics. Elsevier. https://doi.org/10.1016/j.jbi.2014.01.008
[Submitted Version] View | DOI | Download Submitted Version (ext.)
 
[13]
2014 | Published | Journal Article | IST-REx-ID: 2013 | OA
Lin, S., Uhler, C., Sturmfels, B., & Bühlmann, P. (2014). Hypersurfaces and their singularities in partial correlation testing. Foundations of Computational Mathematics. Springer. https://doi.org/10.1007/s10208-014-9205-0
[Submitted Version] View | DOI | Download Submitted Version (ext.)
 
[12]
2014 | Published | Preprint | IST-REx-ID: 2017 | OA
Uhler, C., Lenkoski, A., & Richards, D. (2014). Exact formulas for the normalizing constants of Wishart distributions for graphical models. ArXiv. ArXiv.
View | Download (ext.)
 
[11]
2014 | Published | Conference Paper | IST-REx-ID: 2047 | OA
Yu, F., Rybar, M., Uhler, C., & Fienberg, S. (2014). Differentially-private logistic regression for detecting multiple-SNP association in GWAS databases. In J. Domingo Ferrer (Ed.), Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) (Vol. 8744, pp. 170–184). Ibiza, Spain: Springer. https://doi.org/10.1007/978-3-319-11257-2_14
[Submitted Version] View | DOI | Download Submitted Version (ext.) | arXiv
 
[10]
2013 | Published | Journal Article | IST-REx-ID: 2280 | OA
Uhler, C., & Wright, S. (2013). Packing ellipsoids with overlap. SIAM Review. Society for Industrial and Applied Mathematics . https://doi.org/10.1137/120872309
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 
[9]
2013 | Published | Journal Article | IST-REx-ID: 2009 | OA
Uhler, C., Slavkovic, A., & Fienberg, S. (2013). Privacy-preserving data sharing for genome-wide association studies. Journal of Privacy and Confidentiality . Carnegie Mellon University. https://doi.org/10.29012/jpc.v5i1.629
[Published Version] View | DOI | Download Published Version (ext.)
 
[8]
2013 | Published | Journal Article | IST-REx-ID: 2010 | OA
Uhler, C., Raskutti, G., Bühlmann, P., & Yu, B. (2013). Geometry of the faithfulness assumption in causal inference. The Annals of Statistics. Institute of Mathematical Statistics. https://doi.org/10.1214/12-AOS1080
[Published Version] View | DOI | Download Published Version (ext.) | arXiv
 
[7]
2012 | Published | Journal Article | IST-REx-ID: 2959 | OA
Uhler, C. (2012). Geometry of maximum likelihood estimation in Gaussian graphical models. Annals of Statistics. Institute of Mathematical Statistics. https://doi.org/10.1214/11-AOS957
[Preprint] View | DOI | Download Preprint (ext.)
 
[6]
2011 | Published | Conference Paper | IST-REx-ID: 2960
Fienberg, S., Slavkovic, A., & Uhler, C. (2011). Privacy Preserving GWAS Data Sharing. Presented at the Proceedings of the 11th IEEE International Conference on Data Mining, IEEE. https://doi.org/10.1109/ICDMW.2011.140
View | DOI
 
[5]
2011 | Published | Journal Article | IST-REx-ID: 2961 | OA
Malaspinas, A., & Uhler, C. (2011). Detecting epistasis via Markov bases. Journal of Algebraic Statistics. Public Knowledge Project. http://dx.doi.org/10.18409/jas.v2i1.27
View | DOI | Download (ext.)
 
[4]
2010 | Published | Journal Article | IST-REx-ID: 3306 | OA
Evans, S., Sturmfels, B., & Uhler, C. (2010). Commuting birth and death processes. The Annals of Applied Probability. Institute of Mathematical Statistics. https://doi.org/10.1214/09-AAP615
View | DOI | Download (ext.)
 
[3]
2010 | Published | Journal Article | IST-REx-ID: 3308 | OA
Sturmfels, B., & Uhler, C. (2010). Multivariate Gaussians, semidefinite matrix completion, and convex algebraic geometry. Annals of the Institute of Statistical Mathematics. Springer. https://doi.org/10.1007/s10463-010-0295-4
View | DOI | Download (ext.)
 
[2]
2009 | Published | Journal Article | IST-REx-ID: 3309
Uhler, C. (2009). Mastitis in dairy production: Estimation of sensitivity, specificity and disease prevalence in the absence of a gold standard. Journal of Agricultural Biological and Environmental Statistics. Springer. https://doi.org/10.1198/jabes.2009.0005
View | DOI
 
[1]
2008 | Published | Journal Article | IST-REx-ID: 3307 | OA
Green R, Malaspinas A, Krause J, Briggs A, Johnson P, Uhler C, Meyer M, Good J, Maricic T, Stenzel U, Prüfer K, Siebauer M, Burbano H, Ronan M, Rothberg J, Egholm M, Rudan P, Brajković D, Kućan Ž, Gušić I, Wikström M, Laakkonen L, Kelso J, Slatkin M, Pääbo S. 2008. A complete neandertal mitochondrial genome sequence determined by highhhroughput sequencing. Cell. 134, 416–426.
View | DOI | Download (ext.)
 
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1 Grants


Gaussian Graphical Models: Theory and Applications

2015-07-01 – 2017-09-30
Austrian Science Fund

26 Publications

Mark all

[26]
2023 | Epub ahead of print | Conference Paper | IST-REx-ID: 14974 | OA
Zhang, C., Janzing, D., van der Schaar, M., Locatello, F., Spirtes, P., Zhang, K., … Uhler, C. (2023). Causality in the time of LLMs: Round table discussion results of CLeaR 2023. In 2nd Conference on Causal Learning and Reasoning. Tübingen, Germany.
[Submitted Version] View | Files available
 
[25]
2018 | Published | Journal Article | IST-REx-ID: 1092 | OA
Mohammadi, F., Uhler, C., Wang, C., & Yu, J. (2018). Generalized permutohedra from probabilistic graphical models. SIAM Journal on Discrete Mathematics. SIAM. https://doi.org/10.1137/16M107894X
[Preprint] View | DOI | Download Preprint (ext.)
 
[24]
2018 | Published | Journal Article | IST-REx-ID: 2015 | OA
Raskutti, G., & Uhler, C. (2018). Learning directed acyclic graphs based on sparsest permutations. STAT. Wiley. https://doi.org/10.1002/sta4.183
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 
[23]
2017 | Published | Journal Article | IST-REx-ID: 2016 | OA
Martin Del Campo Sanchez, A., Cepeda Humerez, S. A., & Uhler, C. (2017). Exact goodness-of-fit testing for the Ising model. Scandinavian Journal of Statistics. Wiley-Blackwell. https://doi.org/10.1111/sjos.12251
[Preprint] View | Files available | DOI | Download Preprint (ext.) | WoS | arXiv
 
[22]
2017 | Published | Journal Article | IST-REx-ID: 1089 | OA
Fallat, S., Lauritzen, S., Sadeghi, K., Uhler, C., Wermuth, N., & Zwiernik, P. (2017). Total positivity in Markov structures. Annals of Statistics. Institute of Mathematical Statistics. https://doi.org/10.1214/16-AOS1478
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS
 
[21]
2017 | Published | Journal Article | IST-REx-ID: 1208 | OA
Zwiernik, P., Uhler, C., & Richards, D. (2017). Maximum likelihood estimation for linear Gaussian covariance models. Journal of the Royal Statistical Society. Series B: Statistical Methodology. Wiley-Blackwell. https://doi.org/10.1111/rssb.12217
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS
 
[20]
2017 | Published | Journal Article | IST-REx-ID: 698 | OA
Wang, Y., Nagarajan, M., Uhler, C., & Shivashankar, G. (2017). Orientation and repositioning of chromosomes correlate with cell geometry dependent gene expression. Molecular Biology of the Cell. American Society for Cell Biology. https://doi.org/10.1091/mbc.E16-12-0825
[Published Version] View | Files available | DOI
 
[19]
2016 | Published | Journal Article | IST-REx-ID: 1088
Uhler, C., & Shivashankar, G. V. (2016). Geometric control and modeling of genome reprogramming. BioArchitecture. Taylor & Francis. https://doi.org/10.1080/19490992.2016.1201620
View | DOI
 
[18]
2016 | Published | Journal Article | IST-REx-ID: 1293 | OA
Solus, L. T., Uhler, C., & Yoshida, R. (2016). Extremal positive semidefinite matrices whose sparsity pattern is given by graphs without K5 minors. Linear Algebra and Its Applications. Elsevier. https://doi.org/10.1016/j.laa.2016.07.026
[Preprint] View | DOI | Download Preprint (ext.)
 
[17]
2016 | Published | Journal Article | IST-REx-ID: 1480 | OA
Michałek, M., Sturmfels, B., Uhler, C., & Zwiernik, P. (2016). Exponential varieties. Proceedings of the London Mathematical Society. Oxford University Press. https://doi.org/10.1112/plms/pdv066
[Preprint] View | DOI | Download Preprint (ext.)
 
[16]
2015 | Published | Journal Article | IST-REx-ID: 2014 | OA
Klimova, A., Uhler, C., & Rudas, T. (2015). Faithfulness and learning hypergraphs from discrete distributions. Computational Statistics & Data Analysis. Elsevier. https://doi.org/10.1016/j.csda.2015.01.017
[Preprint] View | DOI | Download Preprint (ext.)
 
[15]
2014 | Published | Conference Paper | IST-REx-ID: 2012 | OA
Iglesias Ham, M., Kerber, M., & Uhler, C. (2014). Sphere packing with limited overlap. In 26th Canadian Conference on Computational Geometry (pp. 155–161). Halifax, Canada: Canadian Conference on Computational Geometry.
[Preprint] View | Download Preprint (ext.) | arXiv
 
[14]
2014 | Published | Journal Article | IST-REx-ID: 2011 | OA
Yu, F., Fienberg, S., Slaković, A., & Uhler, C. (2014). Scalable privacy-preserving data sharing methodology for genome-wide association studies. Journal of Biomedical Informatics. Elsevier. https://doi.org/10.1016/j.jbi.2014.01.008
[Submitted Version] View | DOI | Download Submitted Version (ext.)
 
[13]
2014 | Published | Journal Article | IST-REx-ID: 2013 | OA
Lin, S., Uhler, C., Sturmfels, B., & Bühlmann, P. (2014). Hypersurfaces and their singularities in partial correlation testing. Foundations of Computational Mathematics. Springer. https://doi.org/10.1007/s10208-014-9205-0
[Submitted Version] View | DOI | Download Submitted Version (ext.)
 
[12]
2014 | Published | Preprint | IST-REx-ID: 2017 | OA
Uhler, C., Lenkoski, A., & Richards, D. (2014). Exact formulas for the normalizing constants of Wishart distributions for graphical models. ArXiv. ArXiv.
View | Download (ext.)
 
[11]
2014 | Published | Conference Paper | IST-REx-ID: 2047 | OA
Yu, F., Rybar, M., Uhler, C., & Fienberg, S. (2014). Differentially-private logistic regression for detecting multiple-SNP association in GWAS databases. In J. Domingo Ferrer (Ed.), Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) (Vol. 8744, pp. 170–184). Ibiza, Spain: Springer. https://doi.org/10.1007/978-3-319-11257-2_14
[Submitted Version] View | DOI | Download Submitted Version (ext.) | arXiv
 
[10]
2013 | Published | Journal Article | IST-REx-ID: 2280 | OA
Uhler, C., & Wright, S. (2013). Packing ellipsoids with overlap. SIAM Review. Society for Industrial and Applied Mathematics . https://doi.org/10.1137/120872309
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 
[9]
2013 | Published | Journal Article | IST-REx-ID: 2009 | OA
Uhler, C., Slavkovic, A., & Fienberg, S. (2013). Privacy-preserving data sharing for genome-wide association studies. Journal of Privacy and Confidentiality . Carnegie Mellon University. https://doi.org/10.29012/jpc.v5i1.629
[Published Version] View | DOI | Download Published Version (ext.)
 
[8]
2013 | Published | Journal Article | IST-REx-ID: 2010 | OA
Uhler, C., Raskutti, G., Bühlmann, P., & Yu, B. (2013). Geometry of the faithfulness assumption in causal inference. The Annals of Statistics. Institute of Mathematical Statistics. https://doi.org/10.1214/12-AOS1080
[Published Version] View | DOI | Download Published Version (ext.) | arXiv
 
[7]
2012 | Published | Journal Article | IST-REx-ID: 2959 | OA
Uhler, C. (2012). Geometry of maximum likelihood estimation in Gaussian graphical models. Annals of Statistics. Institute of Mathematical Statistics. https://doi.org/10.1214/11-AOS957
[Preprint] View | DOI | Download Preprint (ext.)
 
[6]
2011 | Published | Conference Paper | IST-REx-ID: 2960
Fienberg, S., Slavkovic, A., & Uhler, C. (2011). Privacy Preserving GWAS Data Sharing. Presented at the Proceedings of the 11th IEEE International Conference on Data Mining, IEEE. https://doi.org/10.1109/ICDMW.2011.140
View | DOI
 
[5]
2011 | Published | Journal Article | IST-REx-ID: 2961 | OA
Malaspinas, A., & Uhler, C. (2011). Detecting epistasis via Markov bases. Journal of Algebraic Statistics. Public Knowledge Project. http://dx.doi.org/10.18409/jas.v2i1.27
View | DOI | Download (ext.)
 
[4]
2010 | Published | Journal Article | IST-REx-ID: 3306 | OA
Evans, S., Sturmfels, B., & Uhler, C. (2010). Commuting birth and death processes. The Annals of Applied Probability. Institute of Mathematical Statistics. https://doi.org/10.1214/09-AAP615
View | DOI | Download (ext.)
 
[3]
2010 | Published | Journal Article | IST-REx-ID: 3308 | OA
Sturmfels, B., & Uhler, C. (2010). Multivariate Gaussians, semidefinite matrix completion, and convex algebraic geometry. Annals of the Institute of Statistical Mathematics. Springer. https://doi.org/10.1007/s10463-010-0295-4
View | DOI | Download (ext.)
 
[2]
2009 | Published | Journal Article | IST-REx-ID: 3309
Uhler, C. (2009). Mastitis in dairy production: Estimation of sensitivity, specificity and disease prevalence in the absence of a gold standard. Journal of Agricultural Biological and Environmental Statistics. Springer. https://doi.org/10.1198/jabes.2009.0005
View | DOI
 
[1]
2008 | Published | Journal Article | IST-REx-ID: 3307 | OA
Green R, Malaspinas A, Krause J, Briggs A, Johnson P, Uhler C, Meyer M, Good J, Maricic T, Stenzel U, Prüfer K, Siebauer M, Burbano H, Ronan M, Rothberg J, Egholm M, Rudan P, Brajković D, Kućan Ž, Gušić I, Wikström M, Laakkonen L, Kelso J, Slatkin M, Pääbo S. 2008. A complete neandertal mitochondrial genome sequence determined by highhhroughput sequencing. Cell. 134, 416–426.
View | DOI | Download (ext.)
 
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