Caroline Uhler

Uhler Group

26 Publications

Mark all

[26]
2023 | Conference Paper | IST-REx-ID: 14974 | OA
Zhang, Cheng, Dominik Janzing, Mihaela van der Schaar, Francesco Locatello, Peter Spirtes, Kun Zhang, Bernhard Schölkopf, and Caroline Uhler. “Causality in the Time of LLMs: Round Table Discussion Results of CLeaR 2023.” In 2nd Conference on Causal Learning and Reasoning, 2023.
[Submitted Version] View | Files available
 
[25]
2018 | Journal Article | IST-REx-ID: 1092 | OA
Mohammadi, Fatemeh, Caroline Uhler, Charles Wang, and Josephine Yu. “Generalized Permutohedra from Probabilistic Graphical Models.” SIAM Journal on Discrete Mathematics. SIAM, 2018. https://doi.org/10.1137/16M107894X.
[Preprint] View | DOI | Download Preprint (ext.)
 
[24]
2018 | Journal Article | IST-REx-ID: 2015 | OA
Raskutti, Garvesh, and Caroline Uhler. “Learning Directed Acyclic Graphs Based on Sparsest Permutations.” STAT. Wiley, 2018. https://doi.org/10.1002/sta4.183.
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 
[23]
2017 | Journal Article | IST-REx-ID: 698 | OA
Wang, Yejun, Mallika Nagarajan, Caroline Uhler, and Gv Shivashankar. “Orientation and Repositioning of Chromosomes Correlate with Cell Geometry Dependent Gene Expression.” Molecular Biology of the Cell. American Society for Cell Biology, 2017. https://doi.org/10.1091/mbc.E16-12-0825.
[Published Version] View | Files available | DOI
 
[22]
2017 | Journal Article | IST-REx-ID: 2016 | OA
Martin Del Campo Sanchez, Abraham, Sarah A Cepeda Humerez, and Caroline Uhler. “Exact Goodness-of-Fit Testing for the Ising Model.” Scandinavian Journal of Statistics. Wiley-Blackwell, 2017. https://doi.org/10.1111/sjos.12251.
[Preprint] View | Files available | DOI | Download Preprint (ext.) | WoS | arXiv
 
[21]
2017 | Journal Article | IST-REx-ID: 1208 | OA
Zwiernik, Piotr, Caroline Uhler, and Donald Richards. “Maximum Likelihood Estimation for Linear Gaussian Covariance Models.” Journal of the Royal Statistical Society. Series B: Statistical Methodology. Wiley-Blackwell, 2017. https://doi.org/10.1111/rssb.12217.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS
 
[20]
2017 | Journal Article | IST-REx-ID: 1089 | OA
Fallat, Shaun, Steffen Lauritzen, Kayvan Sadeghi, Caroline Uhler, Nanny Wermuth, and Piotr Zwiernik. “Total Positivity in Markov Structures.” Annals of Statistics. Institute of Mathematical Statistics, 2017. https://doi.org/10.1214/16-AOS1478.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS
 
[19]
2016 | Journal Article | IST-REx-ID: 1088
Uhler, Caroline, and G V Shivashankar. “Geometric Control and Modeling of Genome Reprogramming.” BioArchitecture. Taylor & Francis, 2016. https://doi.org/10.1080/19490992.2016.1201620.
View | DOI
 
[18]
2016 | Journal Article | IST-REx-ID: 1293 | OA
Solus, Liam T, Caroline Uhler, and Ruriko Yoshida. “Extremal Positive Semidefinite Matrices Whose Sparsity Pattern Is given by Graphs without K5 Minors.” Linear Algebra and Its Applications. Elsevier, 2016. https://doi.org/10.1016/j.laa.2016.07.026.
[Preprint] View | DOI | Download Preprint (ext.)
 
[17]
2016 | Journal Article | IST-REx-ID: 1480 | OA
Michałek, Mateusz, Bernd Sturmfels, Caroline Uhler, and Piotr Zwiernik. “Exponential Varieties.” Proceedings of the London Mathematical Society. Oxford University Press, 2016. https://doi.org/10.1112/plms/pdv066.
[Preprint] View | DOI | Download Preprint (ext.)
 
[16]
2015 | Journal Article | IST-REx-ID: 2014 | OA
Klimova, Anna, Caroline Uhler, and Tamás Rudas. “Faithfulness and Learning Hypergraphs from Discrete Distributions.” Computational Statistics & Data Analysis. Elsevier, 2015. https://doi.org/10.1016/j.csda.2015.01.017.
[Preprint] View | DOI | Download Preprint (ext.)
 
[15]
2014 | Journal Article | IST-REx-ID: 2011 | OA
Yu, Fei, Stephen Fienberg, Alexandra Slaković, and Caroline Uhler. “Scalable Privacy-Preserving Data Sharing Methodology for Genome-Wide Association Studies.” Journal of Biomedical Informatics. Elsevier, 2014. https://doi.org/10.1016/j.jbi.2014.01.008.
[Submitted Version] View | DOI | Download Submitted Version (ext.)
 
[14]
2014 | Journal Article | IST-REx-ID: 2013 | OA
Lin, Shaowei, Caroline Uhler, Bernd Sturmfels, and Peter Bühlmann. “Hypersurfaces and Their Singularities in Partial Correlation Testing.” Foundations of Computational Mathematics. Springer, 2014. https://doi.org/10.1007/s10208-014-9205-0.
[Submitted Version] View | DOI | Download Submitted Version (ext.)
 
[13]
2014 | Preprint | IST-REx-ID: 2017 | OA
Uhler, Caroline, Alex Lenkoski, and Donald Richards. “ Exact Formulas for the Normalizing Constants of Wishart Distributions for Graphical Models.” ArXiv. ArXiv, 2014.
View | Download (ext.)
 
[12]
2014 | Conference Paper | IST-REx-ID: 2047 | OA
Yu, Fei, Michal Rybar, Caroline Uhler, and Stephen Fienberg. “Differentially-Private Logistic Regression for Detecting Multiple-SNP Association in GWAS Databases.” In Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), edited by Josep Domingo Ferrer, 8744:170–84. Springer, 2014. https://doi.org/10.1007/978-3-319-11257-2_14.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | arXiv
 
[11]
2014 | Preprint | IST-REx-ID: 2012 | OA
Iglesias Ham, Mabel, Michael Kerber, and Caroline Uhler. “Sphere Packing with Limited Overlap.” ArXiv, n.d. https://doi.org/10.48550/arXiv.1401.0468.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | arXiv
 
[10]
2013 | Journal Article | IST-REx-ID: 2010 | OA
Uhler, Caroline, Garvesh Raskutti, Peter Bühlmann, and Bin Yu. “Geometry of the Faithfulness Assumption in Causal Inference.” The Annals of Statistics. Institute of Mathematical Statistics, 2013. https://doi.org/10.1214/12-AOS1080.
[Published Version] View | DOI | Download Published Version (ext.) | arXiv
 
[9]
2013 | Journal Article | IST-REx-ID: 2009 | OA
Uhler, Caroline, Aleksandra Slavkovic, and Stephen Fienberg. “Privacy-Preserving Data Sharing for Genome-Wide Association Studies.” Journal of Privacy and Confidentiality . Carnegie Mellon University, 2013. https://doi.org/10.29012/jpc.v5i1.629.
[Published Version] View | DOI | Download Published Version (ext.)
 
[8]
2013 | Journal Article | IST-REx-ID: 2280 | OA
Uhler, Caroline, and Stephen Wright. “Packing Ellipsoids with Overlap.” SIAM Review. Society for Industrial and Applied Mathematics , 2013. https://doi.org/10.1137/120872309.
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 
[7]
2012 | Journal Article | IST-REx-ID: 2959 | OA
Uhler, Caroline. “Geometry of Maximum Likelihood Estimation in Gaussian Graphical Models.” Annals of Statistics. Institute of Mathematical Statistics, 2012. https://doi.org/10.1214/11-AOS957.
[Preprint] View | DOI | Download Preprint (ext.)
 
[6]
2011 | Journal Article | IST-REx-ID: 2961 | OA
Malaspinas, Anna, and Caroline Uhler. “Detecting Epistasis via Markov Bases.” Journal of Algebraic Statistics. Public Knowledge Project, 2011. http://dx.doi.org/10.18409/jas.v2i1.27.
View | DOI | Download (ext.)
 
[5]
2011 | Conference Paper | IST-REx-ID: 2960
Fienberg, Stephen, Aleksandra Slavkovic, and Caroline Uhler. “Privacy Preserving GWAS Data Sharing.” IEEE, 2011. https://doi.org/10.1109/ICDMW.2011.140.
View | DOI
 
[4]
2010 | Journal Article | IST-REx-ID: 3306 | OA
Evans, Steven, Bernd Sturmfels, and Caroline Uhler. “Commuting Birth and Death Processes.” The Annals of Applied Probability. Institute of Mathematical Statistics, 2010. https://doi.org/10.1214/09-AAP615.
View | DOI | Download (ext.)
 
[3]
2010 | Journal Article | IST-REx-ID: 3308 | OA
Sturmfels, Bernd, and Caroline Uhler. “Multivariate Gaussians, Semidefinite Matrix Completion, and Convex Algebraic Geometry.” Annals of the Institute of Statistical Mathematics. Springer, 2010. https://doi.org/10.1007/s10463-010-0295-4.
View | DOI | Download (ext.)
 
[2]
2009 | Journal Article | IST-REx-ID: 3309
Uhler, Caroline. “Mastitis in Dairy Production: Estimation of Sensitivity, Specificity and Disease Prevalence in the Absence of a Gold Standard.” Journal of Agricultural Biological and Environmental Statistics. Springer, 2009. https://doi.org/10.1198/jabes.2009.0005.
View | DOI
 
[1]
2008 | Journal Article | IST-REx-ID: 3307 | OA
Green R, Malaspinas A, Krause J, Briggs A, Johnson P, Uhler C, Meyer M, Good J, Maricic T, Stenzel U, Prüfer K, Siebauer M, Burbano H, Ronan M, Rothberg J, Egholm M, Rudan P, Brajković D, Kućan Ž, Gušić I, Wikström M, Laakkonen L, Kelso J, Slatkin M, Pääbo S. 2008. A complete neandertal mitochondrial genome sequence determined by highhhroughput sequencing. Cell. 134, 416–426.
View | DOI | Download (ext.)
 
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26 Publications

Mark all

[26]
2023 | Conference Paper | IST-REx-ID: 14974 | OA
Zhang, Cheng, Dominik Janzing, Mihaela van der Schaar, Francesco Locatello, Peter Spirtes, Kun Zhang, Bernhard Schölkopf, and Caroline Uhler. “Causality in the Time of LLMs: Round Table Discussion Results of CLeaR 2023.” In 2nd Conference on Causal Learning and Reasoning, 2023.
[Submitted Version] View | Files available
 
[25]
2018 | Journal Article | IST-REx-ID: 1092 | OA
Mohammadi, Fatemeh, Caroline Uhler, Charles Wang, and Josephine Yu. “Generalized Permutohedra from Probabilistic Graphical Models.” SIAM Journal on Discrete Mathematics. SIAM, 2018. https://doi.org/10.1137/16M107894X.
[Preprint] View | DOI | Download Preprint (ext.)
 
[24]
2018 | Journal Article | IST-REx-ID: 2015 | OA
Raskutti, Garvesh, and Caroline Uhler. “Learning Directed Acyclic Graphs Based on Sparsest Permutations.” STAT. Wiley, 2018. https://doi.org/10.1002/sta4.183.
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 
[23]
2017 | Journal Article | IST-REx-ID: 698 | OA
Wang, Yejun, Mallika Nagarajan, Caroline Uhler, and Gv Shivashankar. “Orientation and Repositioning of Chromosomes Correlate with Cell Geometry Dependent Gene Expression.” Molecular Biology of the Cell. American Society for Cell Biology, 2017. https://doi.org/10.1091/mbc.E16-12-0825.
[Published Version] View | Files available | DOI
 
[22]
2017 | Journal Article | IST-REx-ID: 2016 | OA
Martin Del Campo Sanchez, Abraham, Sarah A Cepeda Humerez, and Caroline Uhler. “Exact Goodness-of-Fit Testing for the Ising Model.” Scandinavian Journal of Statistics. Wiley-Blackwell, 2017. https://doi.org/10.1111/sjos.12251.
[Preprint] View | Files available | DOI | Download Preprint (ext.) | WoS | arXiv
 
[21]
2017 | Journal Article | IST-REx-ID: 1208 | OA
Zwiernik, Piotr, Caroline Uhler, and Donald Richards. “Maximum Likelihood Estimation for Linear Gaussian Covariance Models.” Journal of the Royal Statistical Society. Series B: Statistical Methodology. Wiley-Blackwell, 2017. https://doi.org/10.1111/rssb.12217.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS
 
[20]
2017 | Journal Article | IST-REx-ID: 1089 | OA
Fallat, Shaun, Steffen Lauritzen, Kayvan Sadeghi, Caroline Uhler, Nanny Wermuth, and Piotr Zwiernik. “Total Positivity in Markov Structures.” Annals of Statistics. Institute of Mathematical Statistics, 2017. https://doi.org/10.1214/16-AOS1478.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS
 
[19]
2016 | Journal Article | IST-REx-ID: 1088
Uhler, Caroline, and G V Shivashankar. “Geometric Control and Modeling of Genome Reprogramming.” BioArchitecture. Taylor & Francis, 2016. https://doi.org/10.1080/19490992.2016.1201620.
View | DOI
 
[18]
2016 | Journal Article | IST-REx-ID: 1293 | OA
Solus, Liam T, Caroline Uhler, and Ruriko Yoshida. “Extremal Positive Semidefinite Matrices Whose Sparsity Pattern Is given by Graphs without K5 Minors.” Linear Algebra and Its Applications. Elsevier, 2016. https://doi.org/10.1016/j.laa.2016.07.026.
[Preprint] View | DOI | Download Preprint (ext.)
 
[17]
2016 | Journal Article | IST-REx-ID: 1480 | OA
Michałek, Mateusz, Bernd Sturmfels, Caroline Uhler, and Piotr Zwiernik. “Exponential Varieties.” Proceedings of the London Mathematical Society. Oxford University Press, 2016. https://doi.org/10.1112/plms/pdv066.
[Preprint] View | DOI | Download Preprint (ext.)
 
[16]
2015 | Journal Article | IST-REx-ID: 2014 | OA
Klimova, Anna, Caroline Uhler, and Tamás Rudas. “Faithfulness and Learning Hypergraphs from Discrete Distributions.” Computational Statistics & Data Analysis. Elsevier, 2015. https://doi.org/10.1016/j.csda.2015.01.017.
[Preprint] View | DOI | Download Preprint (ext.)
 
[15]
2014 | Journal Article | IST-REx-ID: 2011 | OA
Yu, Fei, Stephen Fienberg, Alexandra Slaković, and Caroline Uhler. “Scalable Privacy-Preserving Data Sharing Methodology for Genome-Wide Association Studies.” Journal of Biomedical Informatics. Elsevier, 2014. https://doi.org/10.1016/j.jbi.2014.01.008.
[Submitted Version] View | DOI | Download Submitted Version (ext.)
 
[14]
2014 | Journal Article | IST-REx-ID: 2013 | OA
Lin, Shaowei, Caroline Uhler, Bernd Sturmfels, and Peter Bühlmann. “Hypersurfaces and Their Singularities in Partial Correlation Testing.” Foundations of Computational Mathematics. Springer, 2014. https://doi.org/10.1007/s10208-014-9205-0.
[Submitted Version] View | DOI | Download Submitted Version (ext.)
 
[13]
2014 | Preprint | IST-REx-ID: 2017 | OA
Uhler, Caroline, Alex Lenkoski, and Donald Richards. “ Exact Formulas for the Normalizing Constants of Wishart Distributions for Graphical Models.” ArXiv. ArXiv, 2014.
View | Download (ext.)
 
[12]
2014 | Conference Paper | IST-REx-ID: 2047 | OA
Yu, Fei, Michal Rybar, Caroline Uhler, and Stephen Fienberg. “Differentially-Private Logistic Regression for Detecting Multiple-SNP Association in GWAS Databases.” In Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), edited by Josep Domingo Ferrer, 8744:170–84. Springer, 2014. https://doi.org/10.1007/978-3-319-11257-2_14.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | arXiv
 
[11]
2014 | Preprint | IST-REx-ID: 2012 | OA
Iglesias Ham, Mabel, Michael Kerber, and Caroline Uhler. “Sphere Packing with Limited Overlap.” ArXiv, n.d. https://doi.org/10.48550/arXiv.1401.0468.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | arXiv
 
[10]
2013 | Journal Article | IST-REx-ID: 2010 | OA
Uhler, Caroline, Garvesh Raskutti, Peter Bühlmann, and Bin Yu. “Geometry of the Faithfulness Assumption in Causal Inference.” The Annals of Statistics. Institute of Mathematical Statistics, 2013. https://doi.org/10.1214/12-AOS1080.
[Published Version] View | DOI | Download Published Version (ext.) | arXiv
 
[9]
2013 | Journal Article | IST-REx-ID: 2009 | OA
Uhler, Caroline, Aleksandra Slavkovic, and Stephen Fienberg. “Privacy-Preserving Data Sharing for Genome-Wide Association Studies.” Journal of Privacy and Confidentiality . Carnegie Mellon University, 2013. https://doi.org/10.29012/jpc.v5i1.629.
[Published Version] View | DOI | Download Published Version (ext.)
 
[8]
2013 | Journal Article | IST-REx-ID: 2280 | OA
Uhler, Caroline, and Stephen Wright. “Packing Ellipsoids with Overlap.” SIAM Review. Society for Industrial and Applied Mathematics , 2013. https://doi.org/10.1137/120872309.
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 
[7]
2012 | Journal Article | IST-REx-ID: 2959 | OA
Uhler, Caroline. “Geometry of Maximum Likelihood Estimation in Gaussian Graphical Models.” Annals of Statistics. Institute of Mathematical Statistics, 2012. https://doi.org/10.1214/11-AOS957.
[Preprint] View | DOI | Download Preprint (ext.)
 
[6]
2011 | Journal Article | IST-REx-ID: 2961 | OA
Malaspinas, Anna, and Caroline Uhler. “Detecting Epistasis via Markov Bases.” Journal of Algebraic Statistics. Public Knowledge Project, 2011. http://dx.doi.org/10.18409/jas.v2i1.27.
View | DOI | Download (ext.)
 
[5]
2011 | Conference Paper | IST-REx-ID: 2960
Fienberg, Stephen, Aleksandra Slavkovic, and Caroline Uhler. “Privacy Preserving GWAS Data Sharing.” IEEE, 2011. https://doi.org/10.1109/ICDMW.2011.140.
View | DOI
 
[4]
2010 | Journal Article | IST-REx-ID: 3306 | OA
Evans, Steven, Bernd Sturmfels, and Caroline Uhler. “Commuting Birth and Death Processes.” The Annals of Applied Probability. Institute of Mathematical Statistics, 2010. https://doi.org/10.1214/09-AAP615.
View | DOI | Download (ext.)
 
[3]
2010 | Journal Article | IST-REx-ID: 3308 | OA
Sturmfels, Bernd, and Caroline Uhler. “Multivariate Gaussians, Semidefinite Matrix Completion, and Convex Algebraic Geometry.” Annals of the Institute of Statistical Mathematics. Springer, 2010. https://doi.org/10.1007/s10463-010-0295-4.
View | DOI | Download (ext.)
 
[2]
2009 | Journal Article | IST-REx-ID: 3309
Uhler, Caroline. “Mastitis in Dairy Production: Estimation of Sensitivity, Specificity and Disease Prevalence in the Absence of a Gold Standard.” Journal of Agricultural Biological and Environmental Statistics. Springer, 2009. https://doi.org/10.1198/jabes.2009.0005.
View | DOI
 
[1]
2008 | Journal Article | IST-REx-ID: 3307 | OA
Green R, Malaspinas A, Krause J, Briggs A, Johnson P, Uhler C, Meyer M, Good J, Maricic T, Stenzel U, Prüfer K, Siebauer M, Burbano H, Ronan M, Rothberg J, Egholm M, Rudan P, Brajković D, Kućan Ž, Gušić I, Wikström M, Laakkonen L, Kelso J, Slatkin M, Pääbo S. 2008. A complete neandertal mitochondrial genome sequence determined by highhhroughput sequencing. Cell. 134, 416–426.
View | DOI | Download (ext.)
 
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    Citation Style: Chicago

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