Tracing Evolution of Auxin Transport and Polarity in Plants

Project Period: 2018-01-01 – 2022-12-31
Externally Funded
Acronym
ETAP
Principal Investigator
Jiří Friml
Department(s)
Friml Group
Grant Number
742985
Funding Organisation
EC/H2020

51 Publications

2024 | Journal Article | IST-REx-ID: 14826 | OA
RAF-like protein kinases mediate a deeply conserved, rapid auxin response
A. Kuhn, M. Roosjen, S. Mutte, S.M. Dubey, V.P. Carrillo Carrasco, S. Boeren, A. Monzer, J. Koehorst, T. Kohchi, R. Nishihama, M. Fendrych, J. Sprakel, J. Friml, D. Weijers, Cell 187 (2024) 130–148.e17.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
2024 | Journal Article | IST-REx-ID: 14251 | OA
Divergence of trafficking and polarization mechanisms for PIN auxin transporters during land plant evolution
H. Tang, K. Lu, Y. Zhang, Y. Cheng, S. Tu, J. Friml, Plant Communications 5 (2024).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
2024 | Journal Article | IST-REx-ID: 15033 | OA
Developmental patterning function of GNOM ARF-GEF mediated from the cell periphery
M. Adamowski, I. Matijevic, J. Friml, ELife 13 (2024).
[Published Version] View | DOI | Download Published Version (ext.)
 
2024 | Journal Article | IST-REx-ID: 15257 | OA [Published Version] View | Files available | DOI
 
2024 | Journal Article | IST-REx-ID: 15301 | OA
Mechanical forces in plant tissue matrix orient cell divisions via microtubule stabilization
L. Hörmayer, J.C. Montesinos López, N. Trozzi, L. Spona, S. Yoshida, P. Marhavá, S. Caballero Mancebo, E. Benková, C.-P.J. Heisenberg, Y. Dagdas, M. Majda, J. Friml, Dev Cell (2024) S1534-5807(24)00177–1.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
2023 | Journal Article | IST-REx-ID: 13212 | OA
Distinct functions of TIR1 and AFB1 receptors in auxin signalling.
H. Chen, L. Li, M. Zou, L. Qi, J. Friml, Molecular Plant 16 (2023) 1117–1119.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2022 | Journal Article | IST-REx-ID: 10717 | OA
Auxin analog-induced Ca2+ signaling is independent of inhibition of endosomal aggregation in Arabidopsis roots
R. Wang, E. Himschoot, M. Grenzi, J. Chen, A. Safi, M. Krebs, K. Schumacher, M. Nowack, W. Moeder, K. Yoshioka, D. Van Damme, I. De Smet, D. Geelen, T. Beeckman, J. Friml, A. Costa, S. Vanneste, Journal of Experimental Botany 73 (2022).
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS | PubMed | Europe PMC
 
2022 | Journal Article | IST-REx-ID: 12144 | OA
Adenylate cyclase activity of TIR1/AFB auxin receptors in plants
L. Qi, M. Kwiatkowski, H. Chen, L. Hörmayer, S.A. Sinclair, M. Zou, C.I. del Genio, M.F. Kubeš, R. Napier, K. Jaworski, J. Friml, Nature 611 (2022) 133–138.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS | PubMed | Europe PMC
 
2022 | Journal Article | IST-REx-ID: 12291 | OA
ABP1–TMK auxin perception for global phosphorylation and auxin canalization
Friml J, Gallei MC, Gelová Z, Johnson AJ, Mazur E, Monzer A, Rodriguez Solovey L, Roosjen M, Verstraeten I, Živanović BD, Zou M, Fiedler L, Giannini C, Grones P, Hrtyan M, Kaufmann W, Kuhn A, Narasimhan M, Randuch M, Rýdza N, Takahashi K, Tan S, Teplova A, Kinoshita T, Weijers D, Rakusová H. 2022. ABP1–TMK auxin perception for global phosphorylation and auxin canalization. Nature. 609(7927), 575–581.
[Submitted Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2022 | Thesis | IST-REx-ID: 11626 | OA
Auxin and strigolactone non-canonical signaling regulating development in Arabidopsis thaliana
M.C. Gallei, Auxin and Strigolactone Non-Canonical Signaling Regulating Development in Arabidopsis Thaliana, Institute of Science and Technology Austria, 2022.
[Published Version] View | Files available | DOI
 
2021 | Book Chapter | IST-REx-ID: 10267
Evaluation of gravitropism in non-seed plants
Y. Zhang, L. Li, J. Friml, in:, E.B. Blancaflor (Ed.), Plant Gravitropism, Springer Nature, 2021, pp. 43–51.
View | DOI | PubMed | Europe PMC
 
2021 | Journal Article | IST-REx-ID: 8582 | OA
Cellular requirements for PIN polar cargo clustering in Arabidopsis thaliana
H. Li, D. von Wangenheim, X. Zhang, S. Tan, N. Darwish-Miranda, S. Naramoto, K.T. Wabnik, R. de Rycke, W. Kaufmann, D.J. Gütl, R. Tejos, P. Grones, M. Ke, X. Chen, J. Dettmer, J. Friml, New Phytologist 229 (2021) 351–369.
[Published Version] View | Files available | DOI | WoS
 
2021 | Journal Article | IST-REx-ID: 8992 | OA
Pho-view of auxin: Reversible protein phosphorylation in auxin biosynthesis, transport and signaling
S. Tan, C. Luschnig, J. Friml, Molecular Plant 14 (2021) 151–165.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2021 | Journal Article | IST-REx-ID: 8993 | OA
Naphthylphthalamic acid associates with and inhibits PIN auxin transporters
L. Abas, M. Kolb, J. Stadlmann, D.P. Janacek, K. Lukic, C. Schwechheimer, L.A. Sazanov, L. Mach, J. Friml, U.Z. Hammes, PNAS 118 (2021).
[Published Version] View | Files available | DOI | Download Published Version (ext.) | WoS | PubMed | Europe PMC
 
2021 | Journal Article | IST-REx-ID: 9443 | OA
Synaptotagmins at the endoplasmic reticulum-plasma membrane contact sites maintain diacylglycerol homeostasis during abiotic stress
N. Ruiz-Lopez, J. Pérez-Sancho, A. Esteban Del Valle, R. Haslam, S. Vanneste, R. Catalá, C. Perea-Resa, D. Van Damme, S. García-Hernández, A. Albert, J. Vallarino, J. Lin, J. Friml, A. Macho, J. Salinas, A. Rosado, J. Napier, V. Amorim-Silva, M. Botella, Plant Cell 33 (2021) 2431–2453.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2021 | Journal Article | IST-REx-ID: 9656 | OA
PIN-mediated polar auxin transport regulations in plant tropic responses
H. Han, M. Adamowski, L. Qi, S. Alotaibi, J. Friml, New Phytologist 232 (2021) 510–522.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2021 | Journal Article | IST-REx-ID: 9290 | OA
AGC kinases and MAB4/MEL proteins maintain PIN polarity by limiting lateral diffusion in plant cells
M. Glanc, K. Van Gelderen, L. Hörmayer, S. Tan, S. Naramoto, X. Zhang, D. Domjan, L. Vcelarova, R. Hauschild, A.J. Johnson, E. de Koning, M. van Dop, E. Rademacher, S. Janson, X. Wei, G. Molnar, M. Fendrych, B. De Rybel, R. Offringa, J. Friml, Current Biology 31 (2021) 1918–1930.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2021 | Journal Article | IST-REx-ID: 10223 | OA
Cell surface and intracellular auxin signalling for H+ fluxes in root growth
L. Li, I. Verstraeten, M. Roosjen, K. Takahashi, L. Rodriguez Solovey, J. Merrin, J. Chen, L. Shabala, W. Smet, H. Ren, S. Vanneste, S. Shabala, B. De Rybel, D. Weijers, T. Kinoshita, W.M. Gray, J. Friml, Nature 599 (2021) 273–277.
[Preprint] View | Files available | DOI | Download Preprint (ext.) | WoS | PubMed | Europe PMC
 
2021 | Thesis | IST-REx-ID: 9992 | OA
Wound healing in the Arabidopsis root meristem
L. Hörmayer, Wound Healing in the Arabidopsis Root Meristem, Institute of Science and Technology Austria, 2021.
[Published Version] View | Files available | DOI
 
2021 | Journal Article | IST-REx-ID: 8931 | OA
Developmental roles of auxin binding protein 1 in Arabidopsis thaliana
Z. Gelová, M.C. Gallei, M. Pernisová, G. Brunoud, X. Zhang, M. Glanc, L. Li, J. Michalko, Z. Pavlovicova, I. Verstraeten, H. Han, J. Hajny, R. Hauschild, M. Čovanová, M. Zwiewka, L. Hörmayer, M. Fendrych, T. Xu, T. Vernoux, J. Friml, Plant Science 303 (2021).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2021 | Journal Article | IST-REx-ID: 9287 | OA
Systematic analysis of specific and nonspecific auxin effects on endocytosis and trafficking
M. Narasimhan, M.C. Gallei, S. Tan, A.J. Johnson, I. Verstraeten, L. Li, L. Rodriguez Solovey, H. Han, E. Himschoot, R. Wang, S. Vanneste, J. Sánchez-Simarro, F. Aniento, M. Adamowski, J. Friml, Plant Physiology 186 (2021) 1122–1142.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2021 | Preprint | IST-REx-ID: 10095 | OA
Cell surface and intracellular auxin signalling for H+-fluxes in root growth
L. Li, I. Verstraeten, M. Roosjen, K. Takahashi, L. Rodriguez Solovey, J. Merrin, J. Chen, L. Shabala, W. Smet, H. Ren, S. Vanneste, S. Shabala, B. De Rybel, D. Weijers, T. Kinoshita, W.M. Gray, J. Friml, Research Square (n.d.).
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
2020 | Journal Article | IST-REx-ID: 6997 | OA
Auxin guides roots to avoid obstacles during gravitropic growth
Y. Zhang, J. Friml, New Phytologist 225 (2020) 1049–1052.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2020 | Journal Article | IST-REx-ID: 7142
Auxin signalling in growth: Schrödinger's cat out of the bag
M.C. Gallei, C. Luschnig, J. Friml, Current Opinion in Plant Biology 53 (2020) 43–49.
View | Files available | DOI | WoS | PubMed | Europe PMC
 
2020 | Journal Article | IST-REx-ID: 7465 | OA
Clathrin-mediated trafficking and PIN trafficking are required for auxin canalization and vascular tissue formation in Arabidopsis
E. Mazur, M.C. Gallei, M. Adamowski, H. Han, H.S. Robert, J. Friml, Plant Science 293 (2020).
[Published Version] View | Files available | DOI | WoS
 
2020 | Journal Article | IST-REx-ID: 7490 | OA
Evolutionarily unique mechanistic framework of clathrin-mediated endocytosis in plants
M. Narasimhan, A.J. Johnson, R. Prizak, W. Kaufmann, S. Tan, B.E. Casillas Perez, J. Friml, ELife 9 (2020).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2020 | Journal Article | IST-REx-ID: 7600 | OA
The lipid code-dependent phosphoswitch PDK1–D6PK activates PIN-mediated auxin efflux in Arabidopsis
S. Tan, X. Zhang, W. Kong, X.-L. Yang, G. Molnar, Z. Vondráková, R. Filepová, J. Petrášek, J. Friml, H.-W. Xue, Nature Plants 6 (2020) 556–569.
[Preprint] View | Files available | DOI | Download Preprint (ext.) | WoS | PubMed | Europe PMC
 
2020 | Journal Article | IST-REx-ID: 8138 | OA
Strigolactones inhibit auxin feedback on PIN-dependent auxin transport canalization
J. Zhang, E. Mazur, J. Balla, M.C. Gallei, P. Kalousek, Z. Medveďová, Y. Li, Y. Wang, T. Prat, M.K. Vasileva, V. Reinöhl, S. Procházka, R. Halouzka, P. Tarkowski, C. Luschnig, P. Brewer, J. Friml, Nature Communications 11 (2020) 3508.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2020 | Journal Article | IST-REx-ID: 8337 | OA
Cell-surface receptors enable perception of extracellular cytokinins
I. Antoniadi, O. Novák, Z. Gelová, A.J. Johnson, O. Plíhal, R. Simerský, V. Mik, T. Vain, E. Mateo-Bonmatí, M. Karady, M. Pernisová, L. Plačková, K. Opassathian, J. Hejátko, S. Robert, J. Friml, K. Doležal, K. Ljung, C. Turnbull, Nature Communications 11 (2020).
[Published Version] View | Files available | DOI | WoS
 
2020 | Journal Article | IST-REx-ID: 8721 | OA
Receptor kinase module targets PIN-dependent auxin transport during canalization
J. Hajny, T. Prat, N. Rydza, L. Rodriguez Solovey, S. Tan, I. Verstraeten, D. Domjan, E. Mazur, E. Smakowska-Luzan, W. Smet, E. Mor, J. Nolf, B. Yang, W. Grunewald, G. Molnar, Y. Belkhadir, B. De Rybel, J. Friml, Science 370 (2020) 550–557.
[Published Version] View | Files available | DOI | Download Published Version (ext.) | WoS | PubMed | Europe PMC
 
2020 | Journal Article | IST-REx-ID: 7619 | OA
Arabidopsis flippases cooperate with ARF GTPase exchange factors to regulate the trafficking and polarity of PIN auxin transporters
X. Zhang, M. Adamowski, P. Marhavá, S. Tan, Y. Zhang, L. Rodriguez Solovey, M. Zwiewka, V. Pukyšová, A.S. Sánchez, V.K. Raxwal, C.S. Hardtke, T. Nodzynski, J. Friml, The Plant Cell 32 (2020) 1644–1664.
[Published Version] View | DOI | Download Published Version (ext.) | WoS | PubMed | Europe PMC
 
2020 | Journal Article | IST-REx-ID: 8607 | OA
Endocytosis of BRASSINOSTEROID INSENSITIVE1 is partly driven by a canonical tyrosine-based Motif
D. Liu, R. Kumar, C. LAN, A.J. Johnson, W. Siao, I. Vanhoutte, P. Wang, K. Bender, K. Yperman, S. Martins, X. Zhao, G. Vert, D. Van Damme, J. Friml, E. Russinova, Plant Cell 32 (2020) 3598–3612.
[Published Version] View | DOI | Download Published Version (ext.) | WoS | PubMed | Europe PMC
 
2020 | Journal Article | IST-REx-ID: 7697 | OA
Directional auxin fluxes in plants by intramolecular domain‐domain co‐evolution of PIN auxin transporters
Y. Zhang, C. Hartinger, X. Wang, J. Friml, New Phytologist 227 (2020) 1406–1416.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2020 | Journal Article | IST-REx-ID: 7643 | OA
SCF TIR1/AFB auxin signaling for bending termination during shoot gravitropism
H. Han, H. Rakusova, I. Verstraeten, Y. Zhang, J. Friml, Plant Physiology 183 (2020) 37–40.
[Published Version] View | Files available | DOI | Download Published Version (ext.) | WoS | PubMed | Europe PMC
 
2020 | Journal Article | IST-REx-ID: 8943 | OA
Non-steroidal anti-inflammatory drugs target TWISTED DWARF1-regulated actin dynamics and auxin transport-mediated plant development
S. Tan, M. Di Donato, M. Glanc, X. Zhang, P. Klíma, J. Liu, A. Bailly, N. Ferro, J. Petrášek, M. Geisler, J. Friml, Cell Reports 33 (2020).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2020 | Journal Article | IST-REx-ID: 8002 | OA
Wounding-induced changes in cellular pressure and localized auxin signalling spatially coordinate restorative divisions in roots
L. Hörmayer, J.C. Montesinos López, P. Marhavá, E. Benková, S. Yoshida, J. Friml, Proceedings of the National Academy of Sciences 117 (2020).
View | Files available | DOI | WoS | PubMed | Europe PMC
 
2020 | Journal Article | IST-REx-ID: 7427 | OA
Salicylic acid targets protein phosphatase 2A to attenuate growth in plants
S. Tan, M.F. Abas, I. Verstraeten, M. Glanc, G. Molnar, J. Hajny, P. Lasák, I. Petřík, E. Russinova, J. Petrášek, O. Novák, J. Pospíšil, J. Friml, Current Biology 30 (2020) 381–395.e8.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2020 | Journal Article | IST-REx-ID: 7500 | OA
Auxin canalization and vascular tissue formation by TIR1/AFB-mediated auxin signaling in arabidopsis
E. Mazur, I. Kulik, J. Hajny, J. Friml, New Phytologist 226 (2020) 1375–1383.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2020 | Journal Article | IST-REx-ID: 8986 | OA
Functional innovations of PIN auxin transporters mark crucial evolutionary transitions during rise of flowering plants
Y. Zhang, L. Rodriguez Solovey, L. Li, X. Zhang, J. Friml, Science Advances 6 (2020).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2019 | Journal Article | IST-REx-ID: 6611 | OA
PIN2 polarity establishment in arabidopsis in the absence of an intact cytoskeleton
M. Glanc, M. Fendrych, J. Friml, Biomolecules 9 (2019).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2019 | Journal Article | IST-REx-ID: 6778 | OA
Evolution of fast root gravitropism in seed plants
Y. Zhang, G. Xiao, X. Wang, X. Zhang, J. Friml, Nature Communications 10 (2019).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2019 | Journal Article | IST-REx-ID: 6259 | OA
TMK1-mediated auxin signalling regulates differential growth of the apical hook
M. Cao, R. Chen, P. Li, Y. Yu, R. Zheng, D. Ge, W. Zheng, X. Wang, Y. Gu, Z. Gelová, J. Friml, H. Zhang, R. Liu, J. He, T. Xu, Nature 568 (2019) 240–243.
[Submitted Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2019 | Journal Article | IST-REx-ID: 7106 | OA
PIN-driven auxin transport emerged early in streptophyte evolution
R. Skokan, E. Medvecká, T. Viaene, S. Vosolsobě, M. Zwiewka, K. Müller, P. Skůpa, M. Karady, Y. Zhang, D.P. Janacek, U.Z. Hammes, K. Ljung, T. Nodzyński, J. Petrášek, J. Friml, Nature Plants 5 (2019) 1114–1119.
[Submitted Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2019 | Journal Article | IST-REx-ID: 6351 | OA
Re-activation of stem cell pathways for pattern restoration in plant wound healing
P. Marhavá, L. Hörmayer, S. Yoshida, P. Marhavý, E. Benková, J. Friml, Cell 177 (2019) 957–969.e13.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2019 | Journal Article | IST-REx-ID: 6943 | OA
Targeted cell ablation-based insights into wound healing and restorative patterning
L. Hörmayer, J. Friml, Current Opinion in Plant Biology 52 (2019) 124–130.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2019 | Journal Article | IST-REx-ID: 6260 | OA
Pinstatic acid promotes auxin transport by inhibiting PIN internalization
A. Oochi, J. Hajny, K. Fukui, Y. Nakao, M.C. Gallei, M. Quareshy, K. Takahashi, T. Kinoshita, S. Harborough, S. Kepinski, H. Kasahara, R. Napier, J. Friml, K. Hayashi, Plant Physiology 180 (2019) 1152–1165.
[Published Version] View | Files available | DOI | Download Published Version (ext.) | WoS | PubMed | Europe PMC
 
2018 | Journal Article | IST-REx-ID: 14 | OA
Relative contribution of PIN-containing secretory vesicles and plasma membrane PINs to the directed auxin transport: Theoretical estimation
S. Hille, M. Akhmanova, M. Glanc, A.J. Johnson, J. Friml, International Journal of Molecular Sciences 19 (2018).
[Published Version] View | Files available | DOI | WoS
 
2018 | Journal Article | IST-REx-ID: 148 | OA
The Chara genome: Secondary complexity and implications for plant terrestrialization
Nishiyama T, Sakayama H, De Vries J, Buschmann H, Saint Marcoux D, Ullrich K, Haas F, Vanderstraeten L, Becker D, Lang D, Vosolsobě S, Rombauts S, Wilhelmsson P, Janitza P, Kern R, Heyl A, Rümpler F, Calderón Villalobos L, Clay J, Skokan R, Toyoda A, Suzuki Y, Kagoshima H, Schijlen E, Tajeshwar N, Catarino B, Hetherington A, Saltykova A, Bonnot C, Breuninger H, Symeonidi A, Radhakrishnan G, Van Nieuwerburgh F, Deforce D, Chang C, Karol K, Hedrich R, Ulvskov P, Glöckner G, Delwiche C, Petrášek J, Van De Peer Y, Friml J, Beilby M, Dolan L, Kohara Y, Sugano S, Fujiyama A, Delaux PM, Quint M, Theissen G, Hagemann M, Harholt J, Dunand C, Zachgo S, Langdale J, Maumus F, Van Der Straeten D, Gould SB, Rensing S. 2018. The Chara genome: Secondary complexity and implications for plant terrestrialization. Cell. 174(2), 448–464.e24.
[Published Version] View | DOI | Download Published Version (ext.) | WoS | PubMed | Europe PMC
 
2018 | Journal Article | IST-REx-ID: 147 | OA
The inhibitor Endosidin 4 targets SEC7 domain-type ARF GTPase exchange factors and interferes with sub cellular trafficking in eukaryotes
U. Kania, T. Nodzyński, Q. Lu, G.R. Hicks, W. Nerinckx, K. Mishev, F. Peurois, J. Cherfils, R.R.M. De, P. Grones, S. Robert, E. Russinova, J. Friml, The Plant Cell 30 (2018) 2553–2572.
[Published Version] View | DOI | Download Published Version (ext.) | WoS | PubMed | Europe PMC
 
2018 | Journal Article | IST-REx-ID: 5673 | OA
Mechanistic framework for cell-intrinsic re-establishment of PIN2 polarity after cell division
M. Glanc, M. Fendrych, J. Friml, Nature Plants 4 (2018) 1082–1088.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS | PubMed | Europe PMC
 
2018 | Journal Article | IST-REx-ID: 191 | OA
PID/WAG-mediated phosphorylation of the Arabidopsis PIN3 auxin transporter mediates polarity switches during gravitropism
P. Grones, M.F. Abas, J. Hajny, A. Jones, S. Waidmann, J. Kleine Vehn, J. Friml, Scientific Reports 8 (2018).
[Published Version] View | Files available | DOI | WoS