Light-microscopy based connectomic reconstruction of mammalian brain tissue
Danzl JG, Lyudchik J, Kreuzinger C. 2025. Light-microscopy based connectomic reconstruction of mammalian brain tissue, Institute of Science and Technology Austria, 10.15479/AT:ISTA:18697.
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Research Data
Corresponding author has ISTA affiliation
Contributor
Tavakoli, MojtabaISTA
;
Lyudchik, JuliaISTA
;
Januszewski, Michal
;
Vistunou, VitaliISTA
;
Agudelo Duenas, NathalieISTA
;
Vorlaufer, JakobISTA
;
Sommer, Christoph MISTA
;
Kreuzinger, CarolineISTA
;
Oliveira, BárbaraISTA
;
Cenameri, Alban
;
Novarino, GaiaISTA
;
Jain, Viren
;
Danzl, Johann GISTA
;
Lyudchik, JuliaISTA
;
Januszewski, Michal
;
Vistunou, VitaliISTA
;
Agudelo Duenas, NathalieISTA
;
Vorlaufer, JakobISTA
;
Sommer, Christoph MISTA
;
Kreuzinger, CarolineISTA
;
Oliveira, BárbaraISTA
;
Cenameri, Alban
;
Novarino, GaiaISTA
;
Jain, Viren
;
Danzl, Johann GISTADepartment
Abstract
The information-processing capability of the brain’s cellular network depends on the physical wiring pattern between neurons and their molecular and functional characteristics. Mapping neurons and resolving their individual synaptic connections can be achieved by volumetric imaging at nanoscale resolution with dense cellular labelling. Light microscopy is uniquely positioned to visualize specific molecules but dense, synapse-level circuit reconstruction by light microscopy has been out of reach due to limitations in resolution, contrast, and volumetric imaging capability. Here we developed light-microscopy based connectomics (LICONN). We integrated specifically engineered hydrogel embedding and expansion with comprehensive deep-learning based segmentation and analysis of connectivity, thus directly incorporating molecular information in synapse-level brain tissue reconstructions. LICONN will allow synapse-level brain tissue phenotyping in biological experiments in a readily adoptable manner.
Publishing Year
Date Published
2025-03-03
Publisher
Institute of Science and Technology Austria
Acknowledged SSUs
IST-REx-ID
Cite this
Danzl JG, Lyudchik J, Kreuzinger C. Light-microscopy based connectomic reconstruction of mammalian brain tissue. 2025. doi:10.15479/AT:ISTA:18697
Danzl, J. G., Lyudchik, J., & Kreuzinger, C. (2025). Light-microscopy based connectomic reconstruction of mammalian brain tissue. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:18697
Danzl, Johann G, Julia Lyudchik, and Caroline Kreuzinger. “Light-Microscopy Based Connectomic Reconstruction of Mammalian Brain Tissue.” Institute of Science and Technology Austria, 2025. https://doi.org/10.15479/AT:ISTA:18697.
J. G. Danzl, J. Lyudchik, and C. Kreuzinger, “Light-microscopy based connectomic reconstruction of mammalian brain tissue.” Institute of Science and Technology Austria, 2025.
Danzl JG, Lyudchik J, Kreuzinger C. 2025. Light-microscopy based connectomic reconstruction of mammalian brain tissue, Institute of Science and Technology Austria, 10.15479/AT:ISTA:18697.
Danzl, Johann G., et al. Light-Microscopy Based Connectomic Reconstruction of Mammalian Brain Tissue. Institute of Science and Technology Austria, 2025, doi:10.15479/AT:ISTA:18697.
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