Christoph M Sommer

22 Publications

Mark all

[22]
2026 | Published | Journal Article | IST-REx-ID: 21746 | OA | PlanS
Vijatovic, David, Florina Alexandra Toma, Y Ignatyev, Zoe P Harrington, Christoph M Sommer, Robert Hauschild, Matthijs Geert Smits, et al. “Multifold Increase in Spinal Inhibitory Cell Types with Emergence of Limb Movement.” Cell Reports. Elsevier, 2026. https://doi.org/10.1016/j.celrep.2026.117227.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[21]
2026 | Epub ahead of print | Journal Article | IST-REx-ID: 22295 | OA | PlanS
Schwarz LA, Dotter C, Isaev S, Lisi M, Malzl D, Büschl C, Ladstätter S, Oliveira B, Barel M, Basilico B, Chintaluri C, Gorkiewicz S, Goudarzi M, Belinova T, Reichl S, Sendžikaitė G, Arcot Jayaram S, Koppensteiner P, Sommer CM, Vogels TP, Menche J, Adameyko I, Kharchenko PV, Bock C, Novarino G. 2026. Cortical development dynamics across autism spectrum disorder mouse models. Nature.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[20]
2025 | Published | Journal Article | IST-REx-ID: 19003 | OA | PlanS
Gallei, Michelle C, Sven M Truckenbrodt, Caroline Kreuzinger, Syamala Inumella, Vitali Vistunou, Christoph M Sommer, Mojtaba Tavakoli, et al. “Super-Resolution Expansion Microscopy in Plant Roots.” The Plant Cell. Oxford University Press, 2025. https://doi.org/10.1093/plcell/koaf006.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[19]
2025 | Published | Journal Article | IST-REx-ID: 19704 | OA | PlanS
Tavakoli, Mojtaba, Julia Lyudchik, Michał Januszewski, Vitali Vistunou, Nathalie Agudelo Duenas, Jakob Vorlaufer, Christoph M Sommer, et al. “Light-Microscopy-Based Connectomic Reconstruction of Mammalian Brain Tissue.” Nature. Springer Nature, 2025. https://doi.org/10.1038/s41586-025-08985-1.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[18]
2024 | Published | Journal Article | IST-REx-ID: 14257 | OA
Michalska, Julia M, Julia Lyudchik, Philipp Velicky, Hana Korinkova, Jake Watson, Alban Cenameri, Christoph M Sommer, et al. “Imaging Brain Tissue Architecture across Millimeter to Nanometer Scales.” Nature Biotechnology. Springer Nature, 2024. https://doi.org/10.1038/s41587-023-01911-8.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[17]
earlier version | 2024 | Draft | Preprint | IST-REx-ID: 18677 | OA
Tavakoli, Mojtaba, Julia Lyudchik, Michał Januszewski, Vitali Vistunou, Nathalie Agudelo Duenas, Jakob Vorlaufer, Christoph M Sommer, et al. “Light-Microscopy Based Dense Connectomic Reconstruction of Mammalian Brain Tissue.” BioRxiv, n.d. https://doi.org/10.1101/2024.03.01.582884.
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[16]
earlier version | 2024 | Draft | Preprint | IST-REx-ID: 18689 | OA
Gallei, Michelle C, Sven M Truckenbrodt, Caroline Kreuzinger, Syamala Inumella, Vitali Vistunou, Christoph M Sommer, Mojtaba Tavakoli, et al. “Super-Resolution Expansion Microscopy in Plant Roots.” BioRxiv, n.d. https://doi.org/10.1101/2024.02.21.581330.
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[15]
2024 | Submitted | Preprint | IST-REx-ID: 19520 | OA
Vijatovic, David, Florina Alexandra Toma, Zoe P Harrington, Christoph M Sommer, Robert Hauschild, Alexandra J. Trevisan, Phillip Chapman, et al. “Spinal Neuron Diversity Scales Exponentially with Swim-to-Limb Transformation during Frog Metamorphosis.” BioRxiv, n.d. https://doi.org/10.1101/2024.09.20.614050.
[Preprint] View | DOI | Download Preprint (ext.)
 
[14]
2023 | Published | Journal Article | IST-REx-ID: 12830 | OA
Huljev, Karla, Shayan Shamipour, Diana C Nunes Pinheiro, Friedrich Preusser, Irene Steccari, Christoph M Sommer, Suyash Naik, and Carl-Philipp J Heisenberg. “A Hydraulic Feedback Loop between Mesendoderm Cell Migration and Interstitial Fluid Relocalization Promotes Embryonic Axis Formation in Zebrafish.” Developmental Cell. Elsevier, 2023. https://doi.org/10.1016/j.devcel.2023.02.016.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[13]
2023 | Published | Journal Article | IST-REx-ID: 13267 | OA
Velicky, Philipp, Eder Miguel Villalba, Julia M Michalska, Julia Lyudchik, Donglai Wei, Zudi Lin, Jake Watson, et al. “Dense 4D Nanoscale Reconstruction of Living Brain Tissue.” Nature Methods. Springer Nature, 2023. https://doi.org/10.1038/s41592-023-01936-6.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[12]
2022 | Published | Journal Article | IST-REx-ID: 12239 | OA
Johnson, Alexander J, Walter Kaufmann, Christoph M Sommer, Tommaso Costanzo, Dana A. Dahhan, Sebastian Y. Bednarek, and Jiří Friml. “Three-Dimensional Visualization of Planta Clathrin-Coated Vesicles at Ultrastructural Resolution.” Molecular Plant. Elsevier, 2022. https://doi.org/10.1016/j.molp.2022.09.003.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[11]
2022 | Published | Journal Article | IST-REx-ID: 10791 | OA
Hansen, Andi H, Florian Pauler, Michael Riedl, Carmen Streicher, Anna-Magdalena Heger, Susanne Laukoter, Christoph M Sommer, et al. “Tissue-Wide Effects Override Cell-Intrinsic Gene Function in Radial Neuron Migration.” Oxford Open Neuroscience. Oxford University Press, 2022. https://doi.org/10.1093/oons/kvac009.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[10]
2022 | Published | Journal Article | IST-REx-ID: 11160 | OA
Villa, Carlo Emanuele, Cristina Cheroni, Christoph Dotter, Alejandro López-Tóbon, Bárbara Oliveira, Roberto Sacco, Aysan Çerağ Yahya, et al. “CHD8 Haploinsufficiency Links Autism to Transient Alterations in Excitatory and Inhibitory Trajectories.” Cell Reports. Elsevier, 2022. https://doi.org/10.1016/j.celrep.2022.110615.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[9]
2022 | Published | Journal Article | IST-REx-ID: 11373 | OA
Radler, Philipp, Natalia S. Baranova, Paulo R Dos Santos Caldas, Christoph M Sommer, Maria D Lopez Pelegrin, David Michalik, and Martin Loose. “In Vitro Reconstitution of Escherichia Coli Divisome Activation.” Nature Communications. Springer Nature, 2022. https://doi.org/10.1038/s41467-022-30301-y.
[Published Version] View | Files available | DOI | WoS
 
[8]
earlier version | 2022 | Draft | Preprint | IST-REx-ID: 11943 | OA
Velicky, Philipp, Eder Miguel Villalba, Julia M Michalska, Donglai Wei, Zudi Lin, Jake Watson, Jakob Troidl, et al. “Saturated Reconstruction of Living Brain Tissue.” BioRxiv, n.d. https://doi.org/10.1101/2022.03.16.484431.
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[7]
2022 | Draft | Preprint | IST-REx-ID: 11950 | OA
Michalska, Julia M, Julia Lyudchik, Philipp Velicky, Hana Korinkova, Jake Watson, Alban Cenameri, Christoph M Sommer, et al. “Uncovering Brain Tissue Architecture across Scales with Super-Resolution Light Microscopy.” BioRxiv, n.d. https://doi.org/10.1101/2022.08.17.504272.
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[6]
2021 | Published | Journal Article | IST-REx-ID: 10179 | OA
Bajaj, Sunanjay, Joshua A. Bagley, Christoph M Sommer, Abel Vertesy, Sakurako Nagumo Wong, Veronica Krenn, Julie Lévi-Strauss, and Juergen A. Knoblich. “Neurotransmitter Signaling Regulates Distinct Phases of Multimodal Human Interneuron Migration.” EMBO Journal. Embo Press, 2021. https://doi.org/10.15252/embj.2021108714.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[5]
2021 | Published | Journal Article | IST-REx-ID: 9429 | OA
Morandell, Jasmin, Lena A Schwarz, Bernadette Basilico, Saren Tasciyan, Georgi A Dimchev, Armel Nicolas, Christoph M Sommer, et al. “Cul3 Regulates Cytoskeleton Protein Homeostasis and Cell Migration during a Critical Window of Brain Development.” Nature Communications. Springer Nature, 2021. https://doi.org/10.1038/s41467-021-23123-x.
[Published Version] View | Files available | DOI | WoS
 
[4]
2020 | Published | Book Chapter | IST-REx-ID: 7572 | OA
Dos Santos Caldas, Paulo R, Philipp Radler, Christoph M Sommer, and Martin Loose. “Computational Analysis of Filament Polymerization Dynamics in Cytoskeletal Networks.” In Methods in Cell Biology, edited by Phong Tran, 158:145–61. Elsevier, 2020. https://doi.org/10.1016/bs.mcb.2020.01.006.
[Preprint] View | Files available | DOI | Download Preprint (ext.) | WoS
 
[3]
earlier version | 2020 | Draft | Preprint | IST-REx-ID: 7800 | OA
Morandell, Jasmin, Lena A Schwarz, Bernadette Basilico, Saren Tasciyan, Armel Nicolas, Christoph M Sommer, Caroline Kreuzinger, et al. “Cul3 Regulates Cytoskeleton Protein Homeostasis and Cell Migration during a Critical Window of Brain Development.” BioRxiv, n.d. https://doi.org/10.1101/2020.01.10.902064 .
[Preprint] View | Files available | DOI
 
[2]
2019 | Published | Journal Article | IST-REx-ID: 6052 | OA
Truckenbrodt, Sven M, Christoph M Sommer, Silvio O Rizzoli, and Johann G Danzl. “A Practical Guide to Optimization in X10 Expansion Microscopy.” Nature Protocols. Nature Publishing Group, 2019. https://doi.org/10.1038/s41596-018-0117-3.
[Submitted Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[1]
2011 | Published | Conference Paper | IST-REx-ID: 9943 | OA
Sommer, Christoph M, Christoph Straehle, Ullrich Köthe, and Fred A. Hamprecht. “Ilastik: Interactive Learning and Segmentation Toolkit.” In 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Micro. Institute of Electrical and Electronics Engineers, 2011. https://doi.org/10.1109/isbi.2011.5872394.
[Preprint] View | DOI | Download Preprint (ext.)
 
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22 Publications

Mark all

[22]
2026 | Published | Journal Article | IST-REx-ID: 21746 | OA | PlanS
Vijatovic, David, Florina Alexandra Toma, Y Ignatyev, Zoe P Harrington, Christoph M Sommer, Robert Hauschild, Matthijs Geert Smits, et al. “Multifold Increase in Spinal Inhibitory Cell Types with Emergence of Limb Movement.” Cell Reports. Elsevier, 2026. https://doi.org/10.1016/j.celrep.2026.117227.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[21]
2026 | Epub ahead of print | Journal Article | IST-REx-ID: 22295 | OA | PlanS
Schwarz LA, Dotter C, Isaev S, Lisi M, Malzl D, Büschl C, Ladstätter S, Oliveira B, Barel M, Basilico B, Chintaluri C, Gorkiewicz S, Goudarzi M, Belinova T, Reichl S, Sendžikaitė G, Arcot Jayaram S, Koppensteiner P, Sommer CM, Vogels TP, Menche J, Adameyko I, Kharchenko PV, Bock C, Novarino G. 2026. Cortical development dynamics across autism spectrum disorder mouse models. Nature.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[20]
2025 | Published | Journal Article | IST-REx-ID: 19003 | OA | PlanS
Gallei, Michelle C, Sven M Truckenbrodt, Caroline Kreuzinger, Syamala Inumella, Vitali Vistunou, Christoph M Sommer, Mojtaba Tavakoli, et al. “Super-Resolution Expansion Microscopy in Plant Roots.” The Plant Cell. Oxford University Press, 2025. https://doi.org/10.1093/plcell/koaf006.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[19]
2025 | Published | Journal Article | IST-REx-ID: 19704 | OA | PlanS
Tavakoli, Mojtaba, Julia Lyudchik, Michał Januszewski, Vitali Vistunou, Nathalie Agudelo Duenas, Jakob Vorlaufer, Christoph M Sommer, et al. “Light-Microscopy-Based Connectomic Reconstruction of Mammalian Brain Tissue.” Nature. Springer Nature, 2025. https://doi.org/10.1038/s41586-025-08985-1.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[18]
2024 | Published | Journal Article | IST-REx-ID: 14257 | OA
Michalska, Julia M, Julia Lyudchik, Philipp Velicky, Hana Korinkova, Jake Watson, Alban Cenameri, Christoph M Sommer, et al. “Imaging Brain Tissue Architecture across Millimeter to Nanometer Scales.” Nature Biotechnology. Springer Nature, 2024. https://doi.org/10.1038/s41587-023-01911-8.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[17]
earlier version | 2024 | Draft | Preprint | IST-REx-ID: 18677 | OA
Tavakoli, Mojtaba, Julia Lyudchik, Michał Januszewski, Vitali Vistunou, Nathalie Agudelo Duenas, Jakob Vorlaufer, Christoph M Sommer, et al. “Light-Microscopy Based Dense Connectomic Reconstruction of Mammalian Brain Tissue.” BioRxiv, n.d. https://doi.org/10.1101/2024.03.01.582884.
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[16]
earlier version | 2024 | Draft | Preprint | IST-REx-ID: 18689 | OA
Gallei, Michelle C, Sven M Truckenbrodt, Caroline Kreuzinger, Syamala Inumella, Vitali Vistunou, Christoph M Sommer, Mojtaba Tavakoli, et al. “Super-Resolution Expansion Microscopy in Plant Roots.” BioRxiv, n.d. https://doi.org/10.1101/2024.02.21.581330.
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[15]
2024 | Submitted | Preprint | IST-REx-ID: 19520 | OA
Vijatovic, David, Florina Alexandra Toma, Zoe P Harrington, Christoph M Sommer, Robert Hauschild, Alexandra J. Trevisan, Phillip Chapman, et al. “Spinal Neuron Diversity Scales Exponentially with Swim-to-Limb Transformation during Frog Metamorphosis.” BioRxiv, n.d. https://doi.org/10.1101/2024.09.20.614050.
[Preprint] View | DOI | Download Preprint (ext.)
 
[14]
2023 | Published | Journal Article | IST-REx-ID: 12830 | OA
Huljev, Karla, Shayan Shamipour, Diana C Nunes Pinheiro, Friedrich Preusser, Irene Steccari, Christoph M Sommer, Suyash Naik, and Carl-Philipp J Heisenberg. “A Hydraulic Feedback Loop between Mesendoderm Cell Migration and Interstitial Fluid Relocalization Promotes Embryonic Axis Formation in Zebrafish.” Developmental Cell. Elsevier, 2023. https://doi.org/10.1016/j.devcel.2023.02.016.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[13]
2023 | Published | Journal Article | IST-REx-ID: 13267 | OA
Velicky, Philipp, Eder Miguel Villalba, Julia M Michalska, Julia Lyudchik, Donglai Wei, Zudi Lin, Jake Watson, et al. “Dense 4D Nanoscale Reconstruction of Living Brain Tissue.” Nature Methods. Springer Nature, 2023. https://doi.org/10.1038/s41592-023-01936-6.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[12]
2022 | Published | Journal Article | IST-REx-ID: 12239 | OA
Johnson, Alexander J, Walter Kaufmann, Christoph M Sommer, Tommaso Costanzo, Dana A. Dahhan, Sebastian Y. Bednarek, and Jiří Friml. “Three-Dimensional Visualization of Planta Clathrin-Coated Vesicles at Ultrastructural Resolution.” Molecular Plant. Elsevier, 2022. https://doi.org/10.1016/j.molp.2022.09.003.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[11]
2022 | Published | Journal Article | IST-REx-ID: 10791 | OA
Hansen, Andi H, Florian Pauler, Michael Riedl, Carmen Streicher, Anna-Magdalena Heger, Susanne Laukoter, Christoph M Sommer, et al. “Tissue-Wide Effects Override Cell-Intrinsic Gene Function in Radial Neuron Migration.” Oxford Open Neuroscience. Oxford University Press, 2022. https://doi.org/10.1093/oons/kvac009.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[10]
2022 | Published | Journal Article | IST-REx-ID: 11160 | OA
Villa, Carlo Emanuele, Cristina Cheroni, Christoph Dotter, Alejandro López-Tóbon, Bárbara Oliveira, Roberto Sacco, Aysan Çerağ Yahya, et al. “CHD8 Haploinsufficiency Links Autism to Transient Alterations in Excitatory and Inhibitory Trajectories.” Cell Reports. Elsevier, 2022. https://doi.org/10.1016/j.celrep.2022.110615.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[9]
2022 | Published | Journal Article | IST-REx-ID: 11373 | OA
Radler, Philipp, Natalia S. Baranova, Paulo R Dos Santos Caldas, Christoph M Sommer, Maria D Lopez Pelegrin, David Michalik, and Martin Loose. “In Vitro Reconstitution of Escherichia Coli Divisome Activation.” Nature Communications. Springer Nature, 2022. https://doi.org/10.1038/s41467-022-30301-y.
[Published Version] View | Files available | DOI | WoS
 
[8]
earlier version | 2022 | Draft | Preprint | IST-REx-ID: 11943 | OA
Velicky, Philipp, Eder Miguel Villalba, Julia M Michalska, Donglai Wei, Zudi Lin, Jake Watson, Jakob Troidl, et al. “Saturated Reconstruction of Living Brain Tissue.” BioRxiv, n.d. https://doi.org/10.1101/2022.03.16.484431.
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[7]
2022 | Draft | Preprint | IST-REx-ID: 11950 | OA
Michalska, Julia M, Julia Lyudchik, Philipp Velicky, Hana Korinkova, Jake Watson, Alban Cenameri, Christoph M Sommer, et al. “Uncovering Brain Tissue Architecture across Scales with Super-Resolution Light Microscopy.” BioRxiv, n.d. https://doi.org/10.1101/2022.08.17.504272.
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[6]
2021 | Published | Journal Article | IST-REx-ID: 10179 | OA
Bajaj, Sunanjay, Joshua A. Bagley, Christoph M Sommer, Abel Vertesy, Sakurako Nagumo Wong, Veronica Krenn, Julie Lévi-Strauss, and Juergen A. Knoblich. “Neurotransmitter Signaling Regulates Distinct Phases of Multimodal Human Interneuron Migration.” EMBO Journal. Embo Press, 2021. https://doi.org/10.15252/embj.2021108714.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[5]
2021 | Published | Journal Article | IST-REx-ID: 9429 | OA
Morandell, Jasmin, Lena A Schwarz, Bernadette Basilico, Saren Tasciyan, Georgi A Dimchev, Armel Nicolas, Christoph M Sommer, et al. “Cul3 Regulates Cytoskeleton Protein Homeostasis and Cell Migration during a Critical Window of Brain Development.” Nature Communications. Springer Nature, 2021. https://doi.org/10.1038/s41467-021-23123-x.
[Published Version] View | Files available | DOI | WoS
 
[4]
2020 | Published | Book Chapter | IST-REx-ID: 7572 | OA
Dos Santos Caldas, Paulo R, Philipp Radler, Christoph M Sommer, and Martin Loose. “Computational Analysis of Filament Polymerization Dynamics in Cytoskeletal Networks.” In Methods in Cell Biology, edited by Phong Tran, 158:145–61. Elsevier, 2020. https://doi.org/10.1016/bs.mcb.2020.01.006.
[Preprint] View | Files available | DOI | Download Preprint (ext.) | WoS
 
[3]
earlier version | 2020 | Draft | Preprint | IST-REx-ID: 7800 | OA
Morandell, Jasmin, Lena A Schwarz, Bernadette Basilico, Saren Tasciyan, Armel Nicolas, Christoph M Sommer, Caroline Kreuzinger, et al. “Cul3 Regulates Cytoskeleton Protein Homeostasis and Cell Migration during a Critical Window of Brain Development.” BioRxiv, n.d. https://doi.org/10.1101/2020.01.10.902064 .
[Preprint] View | Files available | DOI
 
[2]
2019 | Published | Journal Article | IST-REx-ID: 6052 | OA
Truckenbrodt, Sven M, Christoph M Sommer, Silvio O Rizzoli, and Johann G Danzl. “A Practical Guide to Optimization in X10 Expansion Microscopy.” Nature Protocols. Nature Publishing Group, 2019. https://doi.org/10.1038/s41596-018-0117-3.
[Submitted Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[1]
2011 | Published | Conference Paper | IST-REx-ID: 9943 | OA
Sommer, Christoph M, Christoph Straehle, Ullrich Köthe, and Fred A. Hamprecht. “Ilastik: Interactive Learning and Segmentation Toolkit.” In 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Micro. Institute of Electrical and Electronics Engineers, 2011. https://doi.org/10.1109/isbi.2011.5872394.
[Preprint] View | DOI | Download Preprint (ext.)
 
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