ISTA Research Explorer

Christoph M Sommer

22 Publications

[22]

Schwarz LA, Dotter C, Isaev S, Lisi M, Malzl D, Büschl C, Ladstätter S, Oliveira B, Barel M, Basilico B, Chintaluri C, Gorkiewicz S, Goudarzi M, Belinova T, Reichl S, Sendžikaitė G, Arcot Jayaram S, Koppensteiner P, Sommer CM, Vogels TP, Menche J, Adameyko I, Kharchenko PV, Bock C, Novarino G. 2026. Cortical development dynamics across autism spectrum disorder mouse models. Nature.

[21]

Vijatovic, D., Toma, F. A., Ignatyev, Y., Harrington, Z. P., Sommer, C. M., Hauschild, R., … Sweeney, L. B. (2026). Multifold increase in spinal inhibitory cell types with emergence of limb movement. Cell Reports. Elsevier. https://doi.org/10.1016/j.celrep.2026.117227

[Published Version] View | Files available | DOI | PubMed | Europe PMC

[20]

Gallei, M. C., Truckenbrodt, S. M., Kreuzinger, C., Inumella, S., Vistunou, V., Sommer, C. M., … Danzl, J. G. (2025). Super-resolution expansion microscopy in plant roots. The Plant Cell. Oxford University Press. https://doi.org/10.1093/plcell/koaf006

[19]

Tavakoli, M., Lyudchik, J., Januszewski, M., Vistunou, V., Agudelo Duenas, N., Vorlaufer, J., … Danzl, J. G. (2025). Light-microscopy-based connectomic reconstruction of mammalian brain tissue. Nature. Springer Nature. https://doi.org/10.1038/s41586-025-08985-1

[18]

2024 | Submitted | Preprint | IST-REx-ID: 19520 |

Vijatovic, D., Toma, F. A., Harrington, Z. P., Sommer, C. M., Hauschild, R., Trevisan, A. J., … Sweeney, L. B. (n.d.). Spinal neuron diversity scales exponentially with swim-to-limb transformation during frog metamorphosis. bioRxiv. https://doi.org/10.1101/2024.09.20.614050

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[17]

2024 | Published | Journal Article | IST-REx-ID: 14257 |

Michalska, J. M., Lyudchik, J., Velicky, P., Korinkova, H., Watson, J., Cenameri, A., … Danzl, J. G. (2024). Imaging brain tissue architecture across millimeter to nanometer scales. Nature Biotechnology. Springer Nature. https://doi.org/10.1038/s41587-023-01911-8

[16]

Gallei, M. C., Truckenbrodt, S. M., Kreuzinger, C., Inumella, S., Vistunou, V., Sommer, C. M., … Danzl, J. G. (n.d.). Super-resolution expansion microscopy in plant roots. bioRxiv. https://doi.org/10.1101/2024.02.21.581330

[Preprint] View | Files available | DOI | Download Preprint (ext.)

[15]

Tavakoli, M., Lyudchik, J., Januszewski, M., Vistunou, V., Agudelo Duenas, N., Vorlaufer, J., … Danzl, J. G. (n.d.). Light-microscopy based dense connectomic reconstruction of mammalian brain tissue. bioRxiv. https://doi.org/10.1101/2024.03.01.582884

[Preprint] View | Files available | DOI | Download Preprint (ext.)

[14]

2023 | Published | Journal Article | IST-REx-ID: 12830 |

Huljev, K., Shamipour, S., Nunes Pinheiro, D. C., Preusser, F., Steccari, I., Sommer, C. M., … Heisenberg, C.-P. J. (2023). A hydraulic feedback loop between mesendoderm cell migration and interstitial fluid relocalization promotes embryonic axis formation in zebrafish. Developmental Cell. Elsevier. https://doi.org/10.1016/j.devcel.2023.02.016

[13]

2023 | Published | Journal Article | IST-REx-ID: 13267 |

Velicky, P., Miguel Villalba, E., Michalska, J. M., Lyudchik, J., Wei, D., Lin, Z., … Danzl, J. G. (2023). Dense 4D nanoscale reconstruction of living brain tissue. Nature Methods. Springer Nature. https://doi.org/10.1038/s41592-023-01936-6

[12]

2022 | Published | Journal Article | IST-REx-ID: 12239 |

Johnson, A. J., Kaufmann, W., Sommer, C. M., Costanzo, T., Dahhan, D. A., Bednarek, S. Y., & Friml, J. (2022). Three-dimensional visualization of planta clathrin-coated vesicles at ultrastructural resolution. Molecular Plant. Elsevier. https://doi.org/10.1016/j.molp.2022.09.003

[11]

2022 | Published | Journal Article | IST-REx-ID: 10791 |

Hansen, A. H., Pauler, F., Riedl, M., Streicher, C., Heger, A.-M., Laukoter, S., … Hippenmeyer, S. (2022). Tissue-wide effects override cell-intrinsic gene function in radial neuron migration. Oxford Open Neuroscience. Oxford University Press. https://doi.org/10.1093/oons/kvac009

[Published Version] View | Files available | DOI | PubMed | Europe PMC

[10]

2022 | Published | Journal Article | IST-REx-ID: 11160 |

Villa, C. E., Cheroni, C., Dotter, C., López-Tóbon, A., Oliveira, B., Sacco, R., … Novarino, G. (2022). CHD8 haploinsufficiency links autism to transient alterations in excitatory and inhibitory trajectories. Cell Reports. Elsevier. https://doi.org/10.1016/j.celrep.2022.110615

[9]

2022 | Published | Journal Article | IST-REx-ID: 11373 |

Radler, P., Baranova, N. S., Dos Santos Caldas, P. R., Sommer, C. M., Lopez Pelegrin, M. D., Michalik, D., & Loose, M. (2022). In vitro reconstitution of Escherichia coli divisome activation. Nature Communications. Springer Nature. https://doi.org/10.1038/s41467-022-30301-y

[Published Version] View | Files available | DOI | WoS

[8]

Velicky, P., Miguel Villalba, E., Michalska, J. M., Wei, D., Lin, Z., Watson, J., … Danzl, J. G. (n.d.). Saturated reconstruction of living brain tissue. bioRxiv. https://doi.org/10.1101/2022.03.16.484431

[Preprint] View | Files available | DOI | Download Preprint (ext.)

[7]

2022 | Draft | Preprint | IST-REx-ID: 11950 |

Michalska, J. M., Lyudchik, J., Velicky, P., Korinkova, H., Watson, J., Cenameri, A., … Danzl, J. G. (n.d.). Uncovering brain tissue architecture across scales with super-resolution light microscopy. bioRxiv. https://doi.org/10.1101/2022.08.17.504272

[Preprint] View | Files available | DOI | Download Preprint (ext.)

[6]

2021 | Published | Journal Article | IST-REx-ID: 10179 |

Bajaj, S., Bagley, J. A., Sommer, C. M., Vertesy, A., Nagumo Wong, S., Krenn, V., … Knoblich, J. A. (2021). Neurotransmitter signaling regulates distinct phases of multimodal human interneuron migration. EMBO Journal. Embo Press. https://doi.org/10.15252/embj.2021108714

[5]

2021 | Published | Journal Article | IST-REx-ID: 9429 |

Morandell, J., Schwarz, L. A., Basilico, B., Tasciyan, S., Dimchev, G. A., Nicolas, A., … Novarino, G. (2021). Cul3 regulates cytoskeleton protein homeostasis and cell migration during a critical window of brain development. Nature Communications. Springer Nature. https://doi.org/10.1038/s41467-021-23123-x

[Published Version] View | Files available | DOI | WoS

[4]

2020 | Published | Book Chapter | IST-REx-ID: 7572 |

Dos Santos Caldas, P. R., Radler, P., Sommer, C. M., & Loose, M. (2020). Computational analysis of filament polymerization dynamics in cytoskeletal networks. In P. Tran (Ed.), Methods in Cell Biology (Vol. 158, pp. 145–161). Elsevier. https://doi.org/10.1016/bs.mcb.2020.01.006

[Preprint] View | Files available | DOI | Download Preprint (ext.) | WoS

[3]

Morandell, J., Schwarz, L. A., Basilico, B., Tasciyan, S., Nicolas, A., Sommer, C. M., … Novarino, G. (n.d.). Cul3 regulates cytoskeleton protein homeostasis and cell migration during a critical window of brain development. bioRxiv. https://doi.org/10.1101/2020.01.10.902064

[Preprint] View | Files available | DOI

[2]

2019 | Published | Journal Article | IST-REx-ID: 6052 |

Truckenbrodt, S. M., Sommer, C. M., Rizzoli, S. O., & Danzl, J. G. (2019). A practical guide to optimization in X10 expansion microscopy. Nature Protocols. Nature Publishing Group. https://doi.org/10.1038/s41596-018-0117-3

[1]

2011 | Published | Conference Paper | IST-REx-ID: 9943 |

Sommer, C. M., Straehle, C., Köthe, U., & Hamprecht, F. A. (2011). Ilastik: Interactive learning and segmentation toolkit. In 2011 IEEE International Symposium on Biomedical Imaging: from Nano to Micro. Chicago, Illinois, USA: Institute of Electrical and Electronics Engineers. https://doi.org/10.1109/isbi.2011.5872394

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22 Publications

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[21]

[Published Version] View | Files available | DOI | PubMed | Europe PMC

[20]

[19]

[18]

2024 | Submitted | Preprint | IST-REx-ID: 19520 |

[Preprint] View | DOI | Download Preprint (ext.)

[17]

2024 | Published | Journal Article | IST-REx-ID: 14257 |

[16]

[Preprint] View | Files available | DOI | Download Preprint (ext.)

[15]

[Preprint] View | Files available | DOI | Download Preprint (ext.)

[14]

2023 | Published | Journal Article | IST-REx-ID: 12830 |

[13]

2023 | Published | Journal Article | IST-REx-ID: 13267 |

[12]

2022 | Published | Journal Article | IST-REx-ID: 12239 |

[11]

2022 | Published | Journal Article | IST-REx-ID: 10791 |

[Published Version] View | Files available | DOI | PubMed | Europe PMC

[10]

2022 | Published | Journal Article | IST-REx-ID: 11160 |

[9]

2022 | Published | Journal Article | IST-REx-ID: 11373 |

[Published Version] View | Files available | DOI | WoS

[8]

[Preprint] View | Files available | DOI | Download Preprint (ext.)

[7]

2022 | Draft | Preprint | IST-REx-ID: 11950 |

[Preprint] View | Files available | DOI | Download Preprint (ext.)

[6]

2021 | Published | Journal Article | IST-REx-ID: 10179 |

[5]

2021 | Published | Journal Article | IST-REx-ID: 9429 |

[Published Version] View | Files available | DOI | WoS

[4]

2020 | Published | Book Chapter | IST-REx-ID: 7572 |

[Preprint] View | Files available | DOI | Download Preprint (ext.) | WoS

[3]

[Preprint] View | Files available | DOI

[2]

2019 | Published | Journal Article | IST-REx-ID: 6052 |

[1]

2011 | Published | Conference Paper | IST-REx-ID: 9943 |

[Preprint] View | DOI | Download Preprint (ext.)

Christoph M Sommer

22 Publications

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22 Publications

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22 Publications

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