ISTA Research Explorer

Christoph M Sommer

22 Publications

[22]

Schwarz LA, Dotter C, Isaev S, Lisi M, Malzl D, Büschl C, Ladstätter S, Oliveira B, Barel M, Basilico B, Chintaluri C, Gorkiewicz S, Goudarzi M, Belinova T, Reichl S, Sendžikaitė G, Arcot Jayaram S, Koppensteiner P, Sommer CM, Vogels TP, Menche J, Adameyko I, Kharchenko PV, Bock C, Novarino G. 2026. Cortical development dynamics across autism spectrum disorder mouse models. Nature.

[21]

Vijatovic D, Toma FA, Ignatyev Y, et al. Multifold increase in spinal inhibitory cell types with emergence of limb movement. Cell Reports. 2026;45(4). doi:10.1016/j.celrep.2026.117227

[Published Version] View | Files available | DOI | PubMed | Europe PMC

[20]

Gallei MC, Truckenbrodt SM, Kreuzinger C, et al. Super-resolution expansion microscopy in plant roots. The Plant Cell. 2025;37(4). doi:10.1093/plcell/koaf006

[19]

Tavakoli M, Lyudchik J, Januszewski M, et al. Light-microscopy-based connectomic reconstruction of mammalian brain tissue. Nature. 2025;642:398-410. doi:10.1038/s41586-025-08985-1

[18]

2024 | Submitted | Preprint | IST-REx-ID: 19520 |

Vijatovic D, Toma FA, Harrington ZP, et al. Spinal neuron diversity scales exponentially with swim-to-limb transformation during frog metamorphosis. bioRxiv. doi:10.1101/2024.09.20.614050

[Preprint] View | DOI | Download Preprint (ext.)

[17]

2024 | Published | Journal Article | IST-REx-ID: 14257 |

Michalska JM, Lyudchik J, Velicky P, et al. Imaging brain tissue architecture across millimeter to nanometer scales. Nature Biotechnology. 2024;42:1051-1064. doi:10.1038/s41587-023-01911-8

[16]

Gallei MC, Truckenbrodt SM, Kreuzinger C, et al. Super-resolution expansion microscopy in plant roots. bioRxiv. doi:10.1101/2024.02.21.581330

[Preprint] View | Files available | DOI | Download Preprint (ext.)

[15]

Tavakoli M, Lyudchik J, Januszewski M, et al. Light-microscopy based dense connectomic reconstruction of mammalian brain tissue. bioRxiv. doi:10.1101/2024.03.01.582884

[Preprint] View | Files available | DOI | Download Preprint (ext.)

[14]

2023 | Published | Journal Article | IST-REx-ID: 12830 |

Huljev K, Shamipour S, Nunes Pinheiro DC, et al. A hydraulic feedback loop between mesendoderm cell migration and interstitial fluid relocalization promotes embryonic axis formation in zebrafish. Developmental Cell. 2023;58(7):582-596.e7. doi:10.1016/j.devcel.2023.02.016

[13]

2023 | Published | Journal Article | IST-REx-ID: 13267 |

Velicky P, Miguel Villalba E, Michalska JM, et al. Dense 4D nanoscale reconstruction of living brain tissue. Nature Methods. 2023;20:1256-1265. doi:10.1038/s41592-023-01936-6

[12]

2022 | Published | Journal Article | IST-REx-ID: 12239 |

Johnson AJ, Kaufmann W, Sommer CM, et al. Three-dimensional visualization of planta clathrin-coated vesicles at ultrastructural resolution. Molecular Plant. 2022;15(10):1533-1542. doi:10.1016/j.molp.2022.09.003

[11]

2022 | Published | Journal Article | IST-REx-ID: 10791 |

Hansen AH, Pauler F, Riedl M, et al. Tissue-wide effects override cell-intrinsic gene function in radial neuron migration. Oxford Open Neuroscience. 2022;1(1). doi:10.1093/oons/kvac009

[Published Version] View | Files available | DOI | PubMed | Europe PMC

[10]

2022 | Published | Journal Article | IST-REx-ID: 11160 |

Villa CE, Cheroni C, Dotter C, et al. CHD8 haploinsufficiency links autism to transient alterations in excitatory and inhibitory trajectories. Cell Reports. 2022;39(1). doi:10.1016/j.celrep.2022.110615

[9]

2022 | Published | Journal Article | IST-REx-ID: 11373 |

Radler P, Baranova NS, Dos Santos Caldas PR, et al. In vitro reconstitution of Escherichia coli divisome activation. Nature Communications. 2022;13. doi:10.1038/s41467-022-30301-y

[Published Version] View | Files available | DOI | WoS

[8]

Velicky P, Miguel Villalba E, Michalska JM, et al. Saturated reconstruction of living brain tissue. bioRxiv. doi:10.1101/2022.03.16.484431

[Preprint] View | Files available | DOI | Download Preprint (ext.)

[7]

2022 | Draft | Preprint | IST-REx-ID: 11950 |

Michalska JM, Lyudchik J, Velicky P, et al. Uncovering brain tissue architecture across scales with super-resolution light microscopy. bioRxiv. doi:10.1101/2022.08.17.504272

[Preprint] View | Files available | DOI | Download Preprint (ext.)

[6]

2021 | Published | Journal Article | IST-REx-ID: 10179 |

Bajaj S, Bagley JA, Sommer CM, et al. Neurotransmitter signaling regulates distinct phases of multimodal human interneuron migration. EMBO Journal. 2021;40(23). doi:10.15252/embj.2021108714

[5]

2021 | Published | Journal Article | IST-REx-ID: 9429 |

Morandell J, Schwarz LA, Basilico B, et al. Cul3 regulates cytoskeleton protein homeostasis and cell migration during a critical window of brain development. Nature Communications. 2021;12(1). doi:10.1038/s41467-021-23123-x

[Published Version] View | Files available | DOI | WoS

[4]

2020 | Published | Book Chapter | IST-REx-ID: 7572 |

Dos Santos Caldas PR, Radler P, Sommer CM, Loose M. Computational analysis of filament polymerization dynamics in cytoskeletal networks. In: Tran P, ed. Methods in Cell Biology. Vol 158. Elsevier; 2020:145-161. doi:10.1016/bs.mcb.2020.01.006

[Preprint] View | Files available | DOI | Download Preprint (ext.) | WoS

[3]

Morandell J, Schwarz LA, Basilico B, et al. Cul3 regulates cytoskeleton protein homeostasis and cell migration during a critical window of brain development. bioRxiv. doi:10.1101/2020.01.10.902064

[Preprint] View | Files available | DOI

[2]

2019 | Published | Journal Article | IST-REx-ID: 6052 |

Truckenbrodt SM, Sommer CM, Rizzoli SO, Danzl JG. A practical guide to optimization in X10 expansion microscopy. Nature Protocols. 2019;14(3):832–863. doi:10.1038/s41596-018-0117-3

[1]

2011 | Published | Conference Paper | IST-REx-ID: 9943 |

Sommer CM, Straehle C, Köthe U, Hamprecht FA. Ilastik: Interactive learning and segmentation toolkit. In: 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Micro. Institute of Electrical and Electronics Engineers; 2011. doi:10.1109/isbi.2011.5872394

[Preprint] View | DOI | Download Preprint (ext.)

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22 Publications

Mark all

[22]

[21]

Vijatovic D, Toma FA, Ignatyev Y, et al. Multifold increase in spinal inhibitory cell types with emergence of limb movement. Cell Reports. 2026;45(4). doi:10.1016/j.celrep.2026.117227

[Published Version] View | Files available | DOI | PubMed | Europe PMC

[20]

Gallei MC, Truckenbrodt SM, Kreuzinger C, et al. Super-resolution expansion microscopy in plant roots. The Plant Cell. 2025;37(4). doi:10.1093/plcell/koaf006

[19]

Tavakoli M, Lyudchik J, Januszewski M, et al. Light-microscopy-based connectomic reconstruction of mammalian brain tissue. Nature. 2025;642:398-410. doi:10.1038/s41586-025-08985-1

[18]

2024 | Submitted | Preprint | IST-REx-ID: 19520 |

Vijatovic D, Toma FA, Harrington ZP, et al. Spinal neuron diversity scales exponentially with swim-to-limb transformation during frog metamorphosis. bioRxiv. doi:10.1101/2024.09.20.614050

[Preprint] View | DOI | Download Preprint (ext.)

[17]

2024 | Published | Journal Article | IST-REx-ID: 14257 |

Michalska JM, Lyudchik J, Velicky P, et al. Imaging brain tissue architecture across millimeter to nanometer scales. Nature Biotechnology. 2024;42:1051-1064. doi:10.1038/s41587-023-01911-8

[16]

Gallei MC, Truckenbrodt SM, Kreuzinger C, et al. Super-resolution expansion microscopy in plant roots. bioRxiv. doi:10.1101/2024.02.21.581330

[Preprint] View | Files available | DOI | Download Preprint (ext.)

[15]

Tavakoli M, Lyudchik J, Januszewski M, et al. Light-microscopy based dense connectomic reconstruction of mammalian brain tissue. bioRxiv. doi:10.1101/2024.03.01.582884

[Preprint] View | Files available | DOI | Download Preprint (ext.)

[14]

2023 | Published | Journal Article | IST-REx-ID: 12830 |

[13]

2023 | Published | Journal Article | IST-REx-ID: 13267 |

Velicky P, Miguel Villalba E, Michalska JM, et al. Dense 4D nanoscale reconstruction of living brain tissue. Nature Methods. 2023;20:1256-1265. doi:10.1038/s41592-023-01936-6

[12]

2022 | Published | Journal Article | IST-REx-ID: 12239 |

[11]

2022 | Published | Journal Article | IST-REx-ID: 10791 |

Hansen AH, Pauler F, Riedl M, et al. Tissue-wide effects override cell-intrinsic gene function in radial neuron migration. Oxford Open Neuroscience. 2022;1(1). doi:10.1093/oons/kvac009

[Published Version] View | Files available | DOI | PubMed | Europe PMC

[10]

2022 | Published | Journal Article | IST-REx-ID: 11160 |

[9]

2022 | Published | Journal Article | IST-REx-ID: 11373 |

Radler P, Baranova NS, Dos Santos Caldas PR, et al. In vitro reconstitution of Escherichia coli divisome activation. Nature Communications. 2022;13. doi:10.1038/s41467-022-30301-y

[Published Version] View | Files available | DOI | WoS

[8]

Velicky P, Miguel Villalba E, Michalska JM, et al. Saturated reconstruction of living brain tissue. bioRxiv. doi:10.1101/2022.03.16.484431

[Preprint] View | Files available | DOI | Download Preprint (ext.)

[7]

2022 | Draft | Preprint | IST-REx-ID: 11950 |

Michalska JM, Lyudchik J, Velicky P, et al. Uncovering brain tissue architecture across scales with super-resolution light microscopy. bioRxiv. doi:10.1101/2022.08.17.504272

[Preprint] View | Files available | DOI | Download Preprint (ext.)

[6]

2021 | Published | Journal Article | IST-REx-ID: 10179 |

Bajaj S, Bagley JA, Sommer CM, et al. Neurotransmitter signaling regulates distinct phases of multimodal human interneuron migration. EMBO Journal. 2021;40(23). doi:10.15252/embj.2021108714

[5]

2021 | Published | Journal Article | IST-REx-ID: 9429 |

[Published Version] View | Files available | DOI | WoS

[4]

2020 | Published | Book Chapter | IST-REx-ID: 7572 |

[Preprint] View | Files available | DOI | Download Preprint (ext.) | WoS

[3]

Morandell J, Schwarz LA, Basilico B, et al. Cul3 regulates cytoskeleton protein homeostasis and cell migration during a critical window of brain development. bioRxiv. doi:10.1101/2020.01.10.902064

[Preprint] View | Files available | DOI

[2]

2019 | Published | Journal Article | IST-REx-ID: 6052 |

Truckenbrodt SM, Sommer CM, Rizzoli SO, Danzl JG. A practical guide to optimization in X10 expansion microscopy. Nature Protocols. 2019;14(3):832–863. doi:10.1038/s41596-018-0117-3

[1]

2011 | Published | Conference Paper | IST-REx-ID: 9943 |

[Preprint] View | DOI | Download Preprint (ext.)

Christoph M Sommer

22 Publications

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Christoph M Sommer

22 Publications

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22 Publications

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