Christoph M Sommer

Imaging & Optics Facility

19 Publications

Mark all

[19]
2025 | Epub ahead of print | Journal Article | IST-REx-ID: 19003 | OA
Gallei MC, Truckenbrodt SM, Kreuzinger C, et al. Super-resolution expansion microscopy in plant roots. The Plant Cell. 2025;37(4). doi:10.1093/plcell/koaf006
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[18]
2024 | Submitted | Preprint | IST-REx-ID: 19520 | OA
Vijatovic, David, Spinal neuron diversity scales exponentially with swim-to-limb transformation during frog metamorphosis. bioRxiv. 2024
[Preprint] View | DOI | Download Preprint (ext.)
 
[17]
2024 | Draft | Preprint | IST-REx-ID: 18677 | OA
Tavakoli M, Lyudchik J, Januszewski M, et al. Light-microscopy based dense connectomic reconstruction of mammalian brain tissue. bioRxiv. doi:10.1101/2024.03.01.582884
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[16]
2024 | Published | Journal Article | IST-REx-ID: 14257 | OA
Michalska JM, Lyudchik J, Velicky P, et al. Imaging brain tissue architecture across millimeter to nanometer scales. Nature Biotechnology. 2024;42:1051-1064. doi:10.1038/s41587-023-01911-8
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[15]
2024 | Draft | Preprint | IST-REx-ID: 18689 | OA
Gallei MC, Truckenbrodt SM, Kreuzinger C, et al. Super-resolution expansion microscopy in plant roots. bioRxiv. doi:10.1101/2024.02.21.581330
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[14]
2023 | Published | Journal Article | IST-REx-ID: 13267 | OA
Velicky P, Miguel Villalba E, Michalska JM, et al. Dense 4D nanoscale reconstruction of living brain tissue. Nature Methods. 2023;20:1256-1265. doi:10.1038/s41592-023-01936-6
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[13]
2023 | Published | Journal Article | IST-REx-ID: 12830 | OA
Huljev K, Shamipour S, Nunes Pinheiro DC, et al. A hydraulic feedback loop between mesendoderm cell migration and interstitial fluid relocalization promotes embryonic axis formation in zebrafish. Developmental Cell. 2023;58(7):582-596.e7. doi:10.1016/j.devcel.2023.02.016
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[12]
2022 | Published | Journal Article | IST-REx-ID: 12239 | OA
Johnson AJ, Kaufmann W, Sommer CM, et al. Three-dimensional visualization of planta clathrin-coated vesicles at ultrastructural resolution. Molecular Plant. 2022;15(10):1533-1542. doi:10.1016/j.molp.2022.09.003
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[11]
2022 | Published | Journal Article | IST-REx-ID: 10791 | OA
Hansen, Andi H, Tissue-wide effects override cell-intrinsic gene function in radial neuron migration. Oxford Open Neuroscience 1 (1). 2022
[Published Version] View | Files available | DOI
 
[10]
2022 | Published | Journal Article | IST-REx-ID: 11373 | OA
Radler P, Baranova NS, Dos Santos Caldas PR, et al. In vitro reconstitution of Escherichia coli divisome activation. Nature Communications. 2022;13. doi:10.1038/s41467-022-30301-y
[Published Version] View | Files available | DOI | WoS
 
[9]
2022 | Draft | Preprint | IST-REx-ID: 11943 | OA
Velicky P, Miguel Villalba E, Michalska JM, et al. Saturated reconstruction of living brain tissue. bioRxiv. doi:10.1101/2022.03.16.484431
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[8]
2022 | Draft | Preprint | IST-REx-ID: 11950 | OA
Michalska JM, Lyudchik J, Velicky P, et al. Uncovering brain tissue architecture across scales with super-resolution light microscopy. bioRxiv. doi:10.1101/2022.08.17.504272
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[7]
2022 | Published | Journal Article | IST-REx-ID: 11160 | OA
Villa CE, Cheroni C, Dotter C, et al. CHD8 haploinsufficiency links autism to transient alterations in excitatory and inhibitory trajectories. Cell Reports. 2022;39(1). doi:10.1016/j.celrep.2022.110615
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[6]
2021 | Published | Journal Article | IST-REx-ID: 10179 | OA
Bajaj S, Bagley JA, Sommer CM, et al. Neurotransmitter signaling regulates distinct phases of multimodal human interneuron migration. EMBO Journal. 2021;40(23). doi:10.15252/embj.2021108714
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[5]
2021 | Published | Journal Article | IST-REx-ID: 9429 | OA
Morandell J, Schwarz LA, Basilico B, et al. Cul3 regulates cytoskeleton protein homeostasis and cell migration during a critical window of brain development. Nature Communications. 2021;12(1). doi:10.1038/s41467-021-23123-x
[Published Version] View | Files available | DOI | WoS
 
[4]
2020 | Published | Book Chapter | IST-REx-ID: 7572 | OA
Dos Santos Caldas, Paulo R, Computational analysis of filament polymerization dynamics in cytoskeletal networks. Methods in Cell Biology 158. 2020
[Preprint] View | Files available | DOI | Download Preprint (ext.) | WoS
 
[3]
2020 | Draft | Preprint | IST-REx-ID: 7800 | OA
Morandell J, Schwarz LA, Basilico B, et al. Cul3 regulates cytoskeleton protein homeostasis and cell migration during a critical window of brain development. bioRxiv. doi:10.1101/2020.01.10.902064
[Preprint] View | Files available | DOI
 
[2]
2019 | Published | Journal Article | IST-REx-ID: 6052 | OA
Truckenbrodt SM, Sommer CM, Rizzoli SO, Danzl JG. A practical guide to optimization in X10 expansion microscopy. Nature Protocols. 2019;14(3):832–863. doi:10.1038/s41596-018-0117-3
[Submitted Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[1]
2011 | Published | Conference Paper | IST-REx-ID: 9943 | OA
Sommer CM, Straehle C, Köthe U, Hamprecht FA. Ilastik: Interactive learning and segmentation toolkit. In: 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Micro. Institute of Electrical and Electronics Engineers; 2011. doi:10.1109/isbi.2011.5872394
[Preprint] View | DOI | Download Preprint (ext.)
 
Marked Publication(s)

Search

Filter Publications

Display / Sort

Citation Style: AMA

Export / Embed

Grants


19 Publications

Mark all

[19]
2025 | Epub ahead of print | Journal Article | IST-REx-ID: 19003 | OA
Gallei MC, Truckenbrodt SM, Kreuzinger C, et al. Super-resolution expansion microscopy in plant roots. The Plant Cell. 2025;37(4). doi:10.1093/plcell/koaf006
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[18]
2024 | Submitted | Preprint | IST-REx-ID: 19520 | OA
Vijatovic, David, Spinal neuron diversity scales exponentially with swim-to-limb transformation during frog metamorphosis. bioRxiv. 2024
[Preprint] View | DOI | Download Preprint (ext.)
 
[17]
2024 | Draft | Preprint | IST-REx-ID: 18677 | OA
Tavakoli M, Lyudchik J, Januszewski M, et al. Light-microscopy based dense connectomic reconstruction of mammalian brain tissue. bioRxiv. doi:10.1101/2024.03.01.582884
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[16]
2024 | Published | Journal Article | IST-REx-ID: 14257 | OA
Michalska JM, Lyudchik J, Velicky P, et al. Imaging brain tissue architecture across millimeter to nanometer scales. Nature Biotechnology. 2024;42:1051-1064. doi:10.1038/s41587-023-01911-8
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[15]
2024 | Draft | Preprint | IST-REx-ID: 18689 | OA
Gallei MC, Truckenbrodt SM, Kreuzinger C, et al. Super-resolution expansion microscopy in plant roots. bioRxiv. doi:10.1101/2024.02.21.581330
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[14]
2023 | Published | Journal Article | IST-REx-ID: 13267 | OA
Velicky P, Miguel Villalba E, Michalska JM, et al. Dense 4D nanoscale reconstruction of living brain tissue. Nature Methods. 2023;20:1256-1265. doi:10.1038/s41592-023-01936-6
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[13]
2023 | Published | Journal Article | IST-REx-ID: 12830 | OA
Huljev K, Shamipour S, Nunes Pinheiro DC, et al. A hydraulic feedback loop between mesendoderm cell migration and interstitial fluid relocalization promotes embryonic axis formation in zebrafish. Developmental Cell. 2023;58(7):582-596.e7. doi:10.1016/j.devcel.2023.02.016
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[12]
2022 | Published | Journal Article | IST-REx-ID: 12239 | OA
Johnson AJ, Kaufmann W, Sommer CM, et al. Three-dimensional visualization of planta clathrin-coated vesicles at ultrastructural resolution. Molecular Plant. 2022;15(10):1533-1542. doi:10.1016/j.molp.2022.09.003
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[11]
2022 | Published | Journal Article | IST-REx-ID: 10791 | OA
Hansen, Andi H, Tissue-wide effects override cell-intrinsic gene function in radial neuron migration. Oxford Open Neuroscience 1 (1). 2022
[Published Version] View | Files available | DOI
 
[10]
2022 | Published | Journal Article | IST-REx-ID: 11373 | OA
Radler P, Baranova NS, Dos Santos Caldas PR, et al. In vitro reconstitution of Escherichia coli divisome activation. Nature Communications. 2022;13. doi:10.1038/s41467-022-30301-y
[Published Version] View | Files available | DOI | WoS
 
[9]
2022 | Draft | Preprint | IST-REx-ID: 11943 | OA
Velicky P, Miguel Villalba E, Michalska JM, et al. Saturated reconstruction of living brain tissue. bioRxiv. doi:10.1101/2022.03.16.484431
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[8]
2022 | Draft | Preprint | IST-REx-ID: 11950 | OA
Michalska JM, Lyudchik J, Velicky P, et al. Uncovering brain tissue architecture across scales with super-resolution light microscopy. bioRxiv. doi:10.1101/2022.08.17.504272
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[7]
2022 | Published | Journal Article | IST-REx-ID: 11160 | OA
Villa CE, Cheroni C, Dotter C, et al. CHD8 haploinsufficiency links autism to transient alterations in excitatory and inhibitory trajectories. Cell Reports. 2022;39(1). doi:10.1016/j.celrep.2022.110615
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[6]
2021 | Published | Journal Article | IST-REx-ID: 10179 | OA
Bajaj S, Bagley JA, Sommer CM, et al. Neurotransmitter signaling regulates distinct phases of multimodal human interneuron migration. EMBO Journal. 2021;40(23). doi:10.15252/embj.2021108714
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[5]
2021 | Published | Journal Article | IST-REx-ID: 9429 | OA
Morandell J, Schwarz LA, Basilico B, et al. Cul3 regulates cytoskeleton protein homeostasis and cell migration during a critical window of brain development. Nature Communications. 2021;12(1). doi:10.1038/s41467-021-23123-x
[Published Version] View | Files available | DOI | WoS
 
[4]
2020 | Published | Book Chapter | IST-REx-ID: 7572 | OA
Dos Santos Caldas, Paulo R, Computational analysis of filament polymerization dynamics in cytoskeletal networks. Methods in Cell Biology 158. 2020
[Preprint] View | Files available | DOI | Download Preprint (ext.) | WoS
 
[3]
2020 | Draft | Preprint | IST-REx-ID: 7800 | OA
Morandell J, Schwarz LA, Basilico B, et al. Cul3 regulates cytoskeleton protein homeostasis and cell migration during a critical window of brain development. bioRxiv. doi:10.1101/2020.01.10.902064
[Preprint] View | Files available | DOI
 
[2]
2019 | Published | Journal Article | IST-REx-ID: 6052 | OA
Truckenbrodt SM, Sommer CM, Rizzoli SO, Danzl JG. A practical guide to optimization in X10 expansion microscopy. Nature Protocols. 2019;14(3):832–863. doi:10.1038/s41596-018-0117-3
[Submitted Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[1]
2011 | Published | Conference Paper | IST-REx-ID: 9943 | OA
Sommer CM, Straehle C, Köthe U, Hamprecht FA. Ilastik: Interactive learning and segmentation toolkit. In: 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Micro. Institute of Electrical and Electronics Engineers; 2011. doi:10.1109/isbi.2011.5872394
[Preprint] View | DOI | Download Preprint (ext.)
 
Marked Publication(s)

Search

Filter Publications

Display / Sort

Citation Style: AMA

Export / Embed