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85 Publications
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2020 | Published | Journal Article | IST-REx-ID: 8099 |

Disagreement in FST estimators: A case study from sex chromosomes
W.J. Gammerdinger, M.A. Toups, B. Vicoso, Molecular Ecology Resources 20 (2020) 1517–1525.
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W.J. Gammerdinger, M.A. Toups, B. Vicoso, Molecular Ecology Resources 20 (2020) 1517–1525.
2019 | Published | Journal Article | IST-REx-ID: 7421
A reciprocal translocation radically reshapes sex‐linked inheritance in the common frog
M.A. Toups, N. Rodrigues, N. Perrin, M. Kirkpatrick, Molecular Ecology 28 (2019) 1877–1889.
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M.A. Toups, N. Rodrigues, N. Perrin, M. Kirkpatrick, Molecular Ecology 28 (2019) 1877–1889.
2019 | Published | Journal Article | IST-REx-ID: 6710 |

Sexual dimorphism and rapid turnover in gene expression in pre-reproductive seedlings of a dioecious herb
G. Cossard, M.A. Toups, J. Pannell, Annals of Botany 123 (2019) 1119–1131.
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G. Cossard, M.A. Toups, J. Pannell, Annals of Botany 123 (2019) 1119–1131.
2019 | Published | Journal Article | IST-REx-ID: 6821 |

Diurnal variation in opsin expression and common housekeeping genes necessitates comprehensive normalization methods for quantitative real-time PCR analyses
M.R. Yourick, B.A. Sandkam, W.J. Gammerdinger, D. Escobar-Camacho, S.P. Nandamuri, F.E. Clark, B. Joyce, M.A. Conte, T.D. Kocher, K.L. Carleton, Molecular Ecology Resources 19 (2019) 1447–1460.
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M.R. Yourick, B.A. Sandkam, W.J. Gammerdinger, D. Escobar-Camacho, S.P. Nandamuri, F.E. Clark, B. Joyce, M.A. Conte, T.D. Kocher, K.L. Carleton, Molecular Ecology Resources 19 (2019) 1447–1460.
2019 | Published | Journal Article | IST-REx-ID: 6983 |

Clustering of activated CD8 T cells around Malaria-infected hepatocytes is rapid and is driven by antigen-specific cells
R.K. Kelemen, H. Rajakaruna, I. Cockburn, V. Ganusov, Frontiers in Immunology 10 (2019).
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R.K. Kelemen, H. Rajakaruna, I. Cockburn, V. Ganusov, Frontiers in Immunology 10 (2019).
2019 | Published | Journal Article | IST-REx-ID: 6658 |

Haploid selection drives new gene male germline expression
Raices, Julia, Haploid selection drives new gene male germline expression. Genome Research 29 (7). 2019
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Raices, Julia, Haploid selection drives new gene male germline expression. Genome Research 29 (7). 2019
2019 | Published | Journal Article | IST-REx-ID: 6755 |

Dosage compensation throughout the Schistosoma mansoni lifecycle: Specific chromatin landscape of the Z chromosome
Picard, Marion A L, Dosage compensation throughout the Schistosoma mansoni lifecycle: Specific chromatin landscape of the Z chromosome. Genome biology and evolution 11 (7). 2019
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Picard, Marion A L, Dosage compensation throughout the Schistosoma mansoni lifecycle: Specific chromatin landscape of the Z chromosome. Genome biology and evolution 11 (7). 2019
2019 | Published | Journal Article | IST-REx-ID: 6621 |

On the power to detect rare recombination events
Wright, Alison E., On the power to detect rare recombination events. Proceedings of the National Academy of Sciences of the United States of America 116 (26). 2019
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Wright, Alison E., On the power to detect rare recombination events. Proceedings of the National Academy of Sciences of the United States of America 116 (26). 2019
2019 | Published | Journal Article | IST-REx-ID: 6467 |

The distribution of epistasis on simple fitness landscapes
Fraisse, Christelle, The distribution of epistasis on simple fitness landscapes. Biology Letters 15 (4). 2019
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Fraisse, Christelle, The distribution of epistasis on simple fitness landscapes. Biology Letters 15 (4). 2019
2019 | Published | Journal Article | IST-REx-ID: 6418 |

Sex-biased gene expression and dosage compensation on the Artemia franciscana Z-chromosome
A.K. Huylmans, M.A. Toups, A. Macon, W.J. Gammerdinger, B. Vicoso, Genome Biology and Evolution 11 (2019) 1033–1044.
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A.K. Huylmans, M.A. Toups, A. Macon, W.J. Gammerdinger, B. Vicoso, Genome Biology and Evolution 11 (2019) 1033–1044.
2019 | Published | Journal Article | IST-REx-ID: 7400 |

Early sex-chromosome evolution in the diploid dioecious plant Mercurialis annua
P. Veltsos, K.E. Ridout, M.A. Toups, S.C. González-Martínez, A. Muyle, O. Emery, P. Rastas, V. Hudzieczek, R. Hobza, B. Vyskot, G.A.B. Marais, D.A. Filatov, J.R. Pannell, Genetics 212 (2019) 815–835.
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P. Veltsos, K.E. Ridout, M.A. Toups, S.C. González-Martínez, A. Muyle, O. Emery, P. Rastas, V. Hudzieczek, R. Hobza, B. Vyskot, G.A.B. Marais, D.A. Filatov, J.R. Pannell, Genetics 212 (2019) 815–835.
2019 | Published | Journal Article | IST-REx-ID: 7146
Molecular and evolutionary dynamics of animal sex-chromosome turnover
B. Vicoso, Nature Ecology & Evolution 3 (2019) 1632–1641.
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B. Vicoso, Nature Ecology & Evolution 3 (2019) 1632–1641.
2019 | Research Data | IST-REx-ID: 6060 |

Supplementary data for "Sex-biased gene expression and dosage compensation on the Artemia franciscana Z-chromosome" (Huylman, Toups et al., 2019).
B. Vicoso, (2019).
[Published Version]
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B. Vicoso, (2019).
2019 | Published | Journal Article | IST-REx-ID: 6089 |

Pleiotropy modulates the efficacy of selection in drosophila melanogaster
C. Fraisse, G. Puixeu Sala, B. Vicoso, Molecular Biology and Evolution 36 (2019) 500–515.
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C. Fraisse, G. Puixeu Sala, B. Vicoso, Molecular Biology and Evolution 36 (2019) 500–515.
2019 | Published | Journal Article | IST-REx-ID: 6831 |

Variation in sexual dimorphism in a wind-pollinated plant: The influence of geographical context and life-cycle dynamics
G. Puixeu Sala, M. Pickup, D. Field, S.C.H. Barrett, New Phytologist 224 (2019) 1108–1120.
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G. Puixeu Sala, M. Pickup, D. Field, S.C.H. Barrett, New Phytologist 224 (2019) 1108–1120.
2019 | Research Data Reference | IST-REx-ID: 9803 |

Data from: Variation in sexual dimorphism in a wind-pollinated plant: the influence of geographical context and life-cycle dynamics
G. Puixeu Sala, M. Pickup, D. Field, S.C.H. Barrett, (2019).
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G. Puixeu Sala, M. Pickup, D. Field, S.C.H. Barrett, (2019).
2018 | Published | Journal Article | IST-REx-ID: 139 |

The divergence history of European blue mussel species reconstructed from Approximate Bayesian Computation: The effects of sequencing techniques and sampling strategies
C. Fraisse, C. Roux, P. Gagnaire, J. Romiguier, N. Faivre, J. Welch, N. Bierne, PeerJ 2018 (2018).
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C. Fraisse, C. Roux, P. Gagnaire, J. Romiguier, N. Faivre, J. Welch, N. Bierne, PeerJ 2018 (2018).
2018 | Published | Journal Article | IST-REx-ID: 448 |

Hemimetabolous genomes reveal molecular basis of termite eusociality
Harrison M, Jongepier E, Robertson H, Arning N, Bitard Feildel T, Chao H, Childers C, Dinh H, Doddapaneni H, Dugan S, Gowin J, Greiner C, Han Y, Hu H, Hughes D, Huylmans AK, Kemena K, Kremer L, Lee S, López Ezquerra A, Mallet L, Monroy Kuhn J, Moser A, Murali S, Muzny D, Otani S, Piulachs M, Poelchau M, Qu J, Schaub F, Wada Katsumata A, Worley K, Xie Q, Ylla G, Poulsen M, Gibbs R, Schal C, Richards S, Belles X, Korb J, Bornberg Bauer E. 2018. Hemimetabolous genomes reveal molecular basis of termite eusociality. Nature Ecology and Evolution. 2(3), 557–566.
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Harrison M, Jongepier E, Robertson H, Arning N, Bitard Feildel T, Chao H, Childers C, Dinh H, Doddapaneni H, Dugan S, Gowin J, Greiner C, Han Y, Hu H, Hughes D, Huylmans AK, Kemena K, Kremer L, Lee S, López Ezquerra A, Mallet L, Monroy Kuhn J, Moser A, Murali S, Muzny D, Otani S, Piulachs M, Poelchau M, Qu J, Schaub F, Wada Katsumata A, Worley K, Xie Q, Ylla G, Poulsen M, Gibbs R, Schal C, Richards S, Belles X, Korb J, Bornberg Bauer E. 2018. Hemimetabolous genomes reveal molecular basis of termite eusociality. Nature Ecology and Evolution. 2(3), 557–566.
2018 | Published | Journal Article | IST-REx-ID: 5989 |

Parent-of-Origin-Dependent Gene Expression in Male and Female Schistosome Parasites
J. Kincaid-Smith, M.A.L. Picard, C. Cosseau, J. Boissier, D. Severac, C. Grunau, E. Toulza, Genome Biology and Evolution 10 (2018) 840–856.
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J. Kincaid-Smith, M.A.L. Picard, C. Cosseau, J. Boissier, D. Severac, C. Grunau, E. Toulza, Genome Biology and Evolution 10 (2018) 840–856.
2018 | Published | Journal Article | IST-REx-ID: 190 |

Expansions of key protein families in the German cockroach highlight the molecular basis of its remarkable success as a global indoor pest
M. Harrison, N. Arning, L. Kremer, G. Ylla, X. Belles, E. Bornberg Bauer, A.K. Huylmans, E. Jongepier, M. Puilachs, S. Richards, C. Schal, Journal of Experimental Zoology Part B: Molecular and Developmental Evolution 330 (2018) 254–264.
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M. Harrison, N. Arning, L. Kremer, G. Ylla, X. Belles, E. Bornberg Bauer, A.K. Huylmans, E. Jongepier, M. Puilachs, S. Richards, C. Schal, Journal of Experimental Zoology Part B: Molecular and Developmental Evolution 330 (2018) 254–264.
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