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Alexis Benichou

Julian Renaud

Céline Camila Coraly Bräutigam

Ekaterina Maksimova

Gábor Lengyel

Gasper Tkacik

David Brückner

Simon Rella

Bahti Zakirov

Athina Diakogianni

Puzhen Xia

Reka Borbely

Anuj Patel

Krishnan Iyer

Natalia Ruzickova

Sofia Backlund

Tetiana Rabiichuk

Fabrizio Lombardi

Vicent Botella Soler

Heloisa Chiossi

Cristina Savin

Georg Rieckh

Tamar Friedlander

Gabriel Mitchell

Roshan Prizak

Daniele De Martino

Thomas Sokolowski

Bor Kavcic

Remy Chait

Sreyam Sengupta

Moritz Lang

Jan Humplik

Jakob Ruess

Mantas Gabrielaitis

Sarah Cepeda Humerez

Matthew Chalk

Anna Levina (Martius)

Katarina Bodova

Georg Martius

Anna Andersson

Aditya Gilra

Rok Grah

Michal Hledik



175 Publications

2018 | Published | Journal Article | IST-REx-ID: 543 | OA
Toward a unified theory of efficient, predictive, and sparse coding
M.J. Chalk, O. Marre, G. Tkačik, PNAS 115 (2018) 186–191.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS
 
2018 | Research Data Reference | IST-REx-ID: 9813 | OA
Supplemental material for Bodova et al., 2018
K. Bodova, T. Priklopil, D. Field, N.H. Barton, M. Pickup, (2018).
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
2018 | Research Data Reference | IST-REx-ID: 9831
Implementation of the inference method in Matlab
K. Bod’Ová, G. Mitchell, R. Harpaz, E. Schneidman, G. Tkačik, (2018).
[Published Version] View | Files available | DOI
 
2018 | Published | Journal Article | IST-REx-ID: 161 | OA
Statistical mechanics for metabolic networks during steady state growth
D. De Martino, A.A. Mc, T. Bergmiller, C.C. Guet, G. Tkačik, Nature Communications 9 (2018).
[Published Version] View | Files available | DOI | WoS
 
2018 | Published | Journal Article | IST-REx-ID: 607 | OA
Well posedness and maximum entropy approximation for the dynamics of quantitative traits
K. Bodova, J. Haskovec, P. Markowich, Physica D: Nonlinear Phenomena 376–377 (2018) 108–120.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS | arXiv
 
2018 | Published | Journal Article | IST-REx-ID: 281 | OA
Distributed and dynamic intracellular organization of extracellular information
A. Granados, J. Pietsch, S.A. Cepeda Humerez, I. Farquhar, G. Tkačik, P. Swain, PNAS 115 (2018) 6088–6093.
[Preprint] View | Files available | DOI | Download Preprint (ext.) | WoS | PubMed | Europe PMC
 
2018 | Published | Journal Article | IST-REx-ID: 292 | OA
Nonlinear decoding of a complex movie from the mammalian retina
V. Botella Soler, S. Deny, G.S. Martius, O. Marre, G. Tkačik, PLoS Computational Biology 14 (2018).
[Published Version] View | Files available | DOI | WoS
 
2018 | Published | Journal Article | IST-REx-ID: 305
Fabrication and operation of microfluidic hanging drop networks
P. Misun, A. Birchler, M. Lang, A. Hierlemann, O. Frey, Methods in Molecular Biology 1771 (2018) 183–202.
View | DOI
 
2018 | Published | Journal Article | IST-REx-ID: 306 | OA
An introduction to the maximum entropy approach and its application to inference problems in biology
A. De Martino, D. De Martino, Heliyon 4 (2018).
[Published Version] View | Files available | DOI
 
2018 | Published | Journal Article | IST-REx-ID: 31 | OA
Separating intrinsic interactions from extrinsic correlations in a network of sensory neurons
U. Ferrari, S. Deny, M.J. Chalk, G. Tkačik, O. Marre, T. Mora, Physical Review E 98 (2018).
[Preprint] View | DOI | Download Preprint (ext.) | WoS
 
2018 | Published | Journal Article | IST-REx-ID: 316 | OA
Evolutionary pathways for the generation of new self-incompatibility haplotypes in a non-self recognition system
K. Bodova, T. Priklopil, D. Field, N.H. Barton, M. Pickup, Genetics 209 (2018) 861–883.
[Preprint] View | Files available | DOI | Download Preprint (ext.) | WoS
 
2018 | Published | Journal Article | IST-REx-ID: 67 | OA
Evolutionary potential of transcription factors for gene regulatory rewiring
C. Igler, M. Lagator, G. Tkačik, J.P. Bollback, C.C. Guet, Nature Ecology and Evolution 2 (2018) 1633–1643.
[Submitted Version] View | Files available | DOI | WoS
 
2017 | Published | Journal Article | IST-REx-ID: 1007 | OA
Zeros of nonlinear systems with input invariances
M. Lang, E. Sontag, Automatica 81C (2017) 46–55.
[Published Version] View | Files available | DOI | WoS
 
2017 | Published | Journal Article | IST-REx-ID: 993 | OA
Subsampling scaling
A. Levina (Martius), V. Priesemann, Nature Communications 8 (2017).
[Published Version] View | Files available | DOI | WoS
 
2017 | Published | Journal Article | IST-REx-ID: 2016 | OA
Exact goodness-of-fit testing for the Ising model
A. Martin Del Campo Sanchez, S.A. Cepeda Humerez, C. Uhler, Scandinavian Journal of Statistics 44 (2017) 285–306.
[Preprint] View | Files available | DOI | Download Preprint (ext.) | WoS | arXiv
 
2017 | Published | Journal Article | IST-REx-ID: 548 | OA
Maximum entropy modeling of metabolic networks by constraining growth-rate moments predicts coexistence of phenotypes
D. De Martino, Physical Review E 96 (2017).
[Submitted Version] View | DOI | Download Submitted Version (ext.)
 
2017 | Published | Journal Article | IST-REx-ID: 943 | OA
Decoding of position in the developing neural tube from antiparallel morphogen gradients
M.P. Zagórski, Y. Tabata, N. Brandenberg, M. Lutolf, G. Tkačik, T. Bollenbach, J. Briscoe, A. Kicheva, Science 356 (2017) 1379–1383.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS | PubMed | Europe PMC
 
2017 | Published | Journal Article | IST-REx-ID: 947 | OA
Quantifying the entropic cost of cellular growth control
D. De Martino, F. Capuani, A. De Martino, Physical Review E Statistical Nonlinear and Soft Matter Physics 96 (2017).
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS
 
2017 | Published | Journal Article | IST-REx-ID: 955 | OA
Evolution of new regulatory functions on biophysically realistic fitness landscapes
T. Friedlander, R. Prizak, N.H. Barton, G. Tkačik, Nature Communications 8 (2017).
[Published Version] View | Files available | DOI | WoS
 
2017 | Published | Journal Article | IST-REx-ID: 959 | OA
Scales and multimodal flux distributions in stationary metabolic network models via thermodynamics
D. De Martino, Physical Review E Statistical Nonlinear and Soft Matter Physics 95 (2017) 062419.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS
 

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