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4978 Publications
2009 | Conference Paper | IST-REx-ID: 4542 | 
Alternating weighted automata
K. Chatterjee, L. Doyen, T.A. Henzinger, in:, Springer, 2009, pp. 3–13.
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K. Chatterjee, L. Doyen, T.A. Henzinger, in:, Springer, 2009, pp. 3–13.
2009 | Conference Paper | IST-REx-ID: 4545 |
A survey of stochastic games with limsup and liminf objectives
K. Chatterjee, L. Doyen, T.A. Henzinger, in:, Springer, 2009, pp. 1–15.
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K. Chatterjee, L. Doyen, T.A. Henzinger, in:, Springer, 2009, pp. 1–15.
2009 | Conference Paper | IST-REx-ID: 4543
Stochastic games with finitary objectives
K. Chatterjee, T.A. Henzinger, F. Horn, in:, Springer, 2009, pp. 34–54.
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K. Chatterjee, T.A. Henzinger, F. Horn, in:, Springer, 2009, pp. 34–54.
2009 | Conference Paper | IST-REx-ID: 4569 |
Better quality in synthesis through quantitative objectives
R. Bloem, K. Chatterjee, T.A. Henzinger, B. Jobstmann, in:, Springer, 2009, pp. 140–156.
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R. Bloem, K. Chatterjee, T.A. Henzinger, B. Jobstmann, in:, Springer, 2009, pp. 140–156.
2009 | Technical Report | IST-REx-ID: 5393 |
Gist: A solver for probabilistic games
K. Chatterjee, T.A. Henzinger, B. Jobstmann, A. Radhakrishna, Gist: A Solver for Probabilistic Games, IST Austria, 2009.
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K. Chatterjee, T.A. Henzinger, B. Jobstmann, A. Radhakrishna, Gist: A Solver for Probabilistic Games, IST Austria, 2009.
2009 | Technical Report | IST-REx-ID: 5394 |
Improved lower bounds for request-response and finitary Streett games
K. Chatterjee, T.A. Henzinger, F. Horn, Improved Lower Bounds for Request-Response and Finitary Streett Games, IST Austria, 2009.
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K. Chatterjee, T.A. Henzinger, F. Horn, Improved Lower Bounds for Request-Response and Finitary Streett Games, IST Austria, 2009.
2009 | Technical Report | IST-REx-ID: 5392 |
Probabilistic automata on infinite words: Decidability and undecidability results
K. Chatterjee, Probabilistic Automata on Infinite Words: Decidability and Undecidability Results, IST Austria, 2009.
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K. Chatterjee, Probabilistic Automata on Infinite Words: Decidability and Undecidability Results, IST Austria, 2009.
2009 | Technical Report | IST-REx-ID: 5395 |
Qualitative analysis of partially-observable Markov decision processes
K. Chatterjee, L. Doyen, T.A. Henzinger, Qualitative Analysis of Partially-Observable Markov Decision Processes, IST Austria, 2009.
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K. Chatterjee, L. Doyen, T.A. Henzinger, Qualitative Analysis of Partially-Observable Markov Decision Processes, IST Austria, 2009.
2009 | Journal Article | IST-REx-ID: 9453 |
Genome-wide demethylation of Arabidopsis endosperm
T.-F. Hsieh, C.A. Ibarra, P. Silva, A. Zemach, L. Eshed-Williams, R.L. Fischer, D. Zilberman, Science 324 (2009) 1451–1454.
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T.-F. Hsieh, C.A. Ibarra, P. Silva, A. Zemach, L. Eshed-Williams, R.L. Fischer, D. Zilberman, Science 324 (2009) 1451–1454.
2008 | Journal Article | IST-REx-ID: 9537
The evolving functions of DNA methylation
D. Zilberman, Current Opinion in Plant Biology 11 (2008) 554–559.
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D. Zilberman, Current Opinion in Plant Biology 11 (2008) 554–559.
2008 | Journal Article | IST-REx-ID: 9457 |
Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks
D. Zilberman, D. Coleman-Derr, T. Ballinger, S. Henikoff, Nature 456 (2008) 125–129.
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D. Zilberman, D. Coleman-Derr, T. Ballinger, S. Henikoff, Nature 456 (2008) 125–129.
2008 | Journal Article | IST-REx-ID: 517
Identity and coalescence in structured populations: A commentary on 'Inbreeding coefficients and coalescence times' by Montgomery Slatkin
N.H. Barton, Genetics Research 89 (2008) 475–477.
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N.H. Barton, Genetics Research 89 (2008) 475–477.
2007 | Journal Article | IST-REx-ID: 9487 |
DNA demethylation in the Arabidopsis genome
J. Penterman, D. Zilberman, J.H. Huh, T. Ballinger, S. Henikoff, R.L. Fischer, Proceedings of the National Academy of Sciences 104 (2007) 6752–6757.
[Published Version]
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J. Penterman, D. Zilberman, J.H. Huh, T. Ballinger, S. Henikoff, R.L. Fischer, Proceedings of the National Academy of Sciences 104 (2007) 6752–6757.
2007 | Other Publication | IST-REx-ID: 9504
The human promoter methylome
D. Zilberman, The Human Promoter Methylome, Nature Publishing Group, 2007.
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D. Zilberman, The Human Promoter Methylome, Nature Publishing Group, 2007.
2007 | Journal Article | IST-REx-ID: 9524 |
Genome-wide analysis of DNA methylation patterns
D. Zilberman, S. Henikoff, Development 134 (2007) 3959–3965.
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D. Zilberman, S. Henikoff, Development 134 (2007) 3959–3965.
2007 | Journal Article | IST-REx-ID: 12201
Packaging the male germline in plants
X. Feng, H.G. Dickinson, Trends in Genetics 23 (2007) 503–510.
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X. Feng, H.G. Dickinson, Trends in Genetics 23 (2007) 503–510.
2006 | Journal Article | IST-REx-ID: 9505
Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription
D. Zilberman, M. Gehring, R.K. Tran, T. Ballinger, S. Henikoff, Nature Genetics 39 (2006) 61–69.
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D. Zilberman, M. Gehring, R.K. Tran, T. Ballinger, S. Henikoff, Nature Genetics 39 (2006) 61–69.
2005 | Journal Article | IST-REx-ID: 9491 |
DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes
R.K. Tran, J.G. Henikoff, D. Zilberman, R.F. Ditt, S.E. Jacobsen, S. Henikoff, Current Biology 15 (2005) 154–159.
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R.K. Tran, J.G. Henikoff, D. Zilberman, R.F. Ditt, S.E. Jacobsen, S. Henikoff, Current Biology 15 (2005) 154–159.
2005 | Journal Article | IST-REx-ID: 9514 |
Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis
R.K. Tran, D. Zilberman, C. de Bustos, R.F. Ditt, J.G. Henikoff, A.M. Lindroth, J. Delrow, T. Boyle, S. Kwong, T.D. Bryson, S.E. Jacobsen, S. Henikoff, Genome Biology 6 (2005).
[Published Version]
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R.K. Tran, D. Zilberman, C. de Bustos, R.F. Ditt, J.G. Henikoff, A.M. Lindroth, J. Delrow, T. Boyle, S. Kwong, T.D. Bryson, S.E. Jacobsen, S. Henikoff, Genome Biology 6 (2005).
2005 | Journal Article | IST-REx-ID: 9529
Epigenetic inheritance in Arabidopsis: Selective silence
D. Zilberman, S. Henikoff, Current Opinion in Genetics and Development 15 (2005) 557–562.
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D. Zilberman, S. Henikoff, Current Opinion in Genetics and Development 15 (2005) 557–562.
2004 | Journal Article | IST-REx-ID: 9493 |
Role of Arabidopsis ARGONAUTE4 in RNA-directed DNA methylation triggered by inverted repeats
D. Zilberman, X. Cao, L.K. Johansen, Z. Xie, J.C. Carrington, S.E. Jacobsen, Current Biology 14 (2004) 1214–1220.
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D. Zilberman, X. Cao, L.K. Johansen, Z. Xie, J.C. Carrington, S.E. Jacobsen, Current Biology 14 (2004) 1214–1220.
2004 | Journal Article | IST-REx-ID: 9517 |
Genetic and functional diversification of small RNA pathways in plants
Z. Xie, L.K. Johansen, A.M. Gustafson, K.D. Kasschau, A.D. Lellis, D. Zilberman, S.E. Jacobsen, J.C. Carrington, PLoS Biology 2 (2004) 0642–0652.
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Z. Xie, L.K. Johansen, A.M. Gustafson, K.D. Kasschau, A.D. Lellis, D. Zilberman, S.E. Jacobsen, J.C. Carrington, PLoS Biology 2 (2004) 0642–0652.
2004 | Journal Article | IST-REx-ID: 9511 |
Silencing of transposons in plant genomes: kick them when they're down
D. Zilberman, S. Henikoff, Genome Biology 5 (2004).
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D. Zilberman, S. Henikoff, Genome Biology 5 (2004).
2004 | Journal Article | IST-REx-ID: 9454
RNA silencing genes control de novo DNA methylation
S.W.-L. Chan, D. Zilberman, Zhixin Xie, Lisa K. Johansen, J.C. Carrington, S.E. Jacobsen, Science 303 (2004) 1336.
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S.W.-L. Chan, D. Zilberman, Zhixin Xie, Lisa K. Johansen, J.C. Carrington, S.E. Jacobsen, Science 303 (2004) 1336.
2004 | Journal Article | IST-REx-ID: 12203
A new geranylgeranyl Diphosphate synthase gene from Ginkgo biloba, which intermediates the biosynthesis of the key precursor for ginkgolides
Z. Liao, M. Chen, Y. Gong, L. Guo, Q. Tan, X. Feng, X. Sun, F. Tan, K. Tang, DNA Sequence 15 (2004) 153–158.
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Z. Liao, M. Chen, Y. Gong, L. Guo, Q. Tan, X. Feng, X. Sun, F. Tan, K. Tang, DNA Sequence 15 (2004) 153–158.
2003 | Journal Article | IST-REx-ID: 9495 |
Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation
X. Cao, W. Aufsatz, D. Zilberman, M.F. Mette, M.S. Huang, M. Matzke, S.E. Jacobsen, Current Biology 13 (2003) 2212–2217.
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X. Cao, W. Aufsatz, D. Zilberman, M.F. Mette, M.S. Huang, M. Matzke, S.E. Jacobsen, Current Biology 13 (2003) 2212–2217.
2003 | Journal Article | IST-REx-ID: 9455
ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation
D. Zilberman, Xiaofeng Cao, S.E. Jacobsen, Science 299 (2003) 716–719.
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D. Zilberman, Xiaofeng Cao, S.E. Jacobsen, Science 299 (2003) 716–719.
2001 | Journal Article | IST-REx-ID: 9444
Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation
A.M. Lindroth, X. Cao, J.P. Jackson, D. Zilberman, C.M. McCallum, S. Henikoff, S.E. Jacobsen, Science 292 (2001) 2077–2080.
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A.M. Lindroth, X. Cao, J.P. Jackson, D. Zilberman, C.M. McCallum, S. Henikoff, S.E. Jacobsen, Science 292 (2001) 2077–2080.