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4978 Publications
2009 | Conference Paper | IST-REx-ID: 4542 | 
Chatterjee, K., Doyen, L., & Henzinger, T. A. (2009). Alternating weighted automata (Vol. 5699, pp. 3–13). Presented at the FCT: Fundamentals of Computation Theory, Wroclaw, Poland: Springer. https://doi.org/10.1007/978-3-642-03409-1_2
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2009 | Conference Paper | IST-REx-ID: 4545 |
Chatterjee, K., Doyen, L., & Henzinger, T. A. (2009). A survey of stochastic games with limsup and liminf objectives (Vol. 5556, pp. 1–15). Presented at the ICALP: Automata, Languages and Programming, Rhodos, Greece: Springer. https://doi.org/10.1007/978-3-642-02930-1_1
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2009 | Conference Paper | IST-REx-ID: 4543
Chatterjee, K., Henzinger, T. A., & Horn, F. (2009). Stochastic games with finitary objectives (Vol. 5734, pp. 34–54). Presented at the MFCS: Mathematical Foundations of Computer Science, High Tatras, Slovakia: Springer. https://doi.org/10.1007/978-3-642-03816-7_4
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2009 | Conference Paper | IST-REx-ID: 4569 |
Bloem, R., Chatterjee, K., Henzinger, T. A., & Jobstmann, B. (2009). Better quality in synthesis through quantitative objectives (Vol. 5643, pp. 140–156). Presented at the CAV: Computer Aided Verification, Grenoble, France: Springer. https://doi.org/10.1007/978-3-642-02658-4_14
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2009 | Technical Report | IST-REx-ID: 5393 |
Chatterjee, K., Henzinger, T. A., Jobstmann, B., & Radhakrishna, A. (2009). Gist: A solver for probabilistic games. IST Austria. https://doi.org/10.15479/AT:IST-2009-0003
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2009 | Technical Report | IST-REx-ID: 5394 |
Chatterjee, K., Henzinger, T. A., & Horn, F. (2009). Improved lower bounds for request-response and finitary Streett games. IST Austria. https://doi.org/10.15479/AT:IST-2009-0002
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2009 | Technical Report | IST-REx-ID: 5392 |
Chatterjee, K. (2009). Probabilistic automata on infinite words: Decidability and undecidability results. IST Austria. https://doi.org/10.15479/AT:IST-2009-0004
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2009 | Technical Report | IST-REx-ID: 5395 |
Chatterjee, K., Doyen, L., & Henzinger, T. A. (2009). Qualitative analysis of partially-observable Markov decision processes. IST Austria. https://doi.org/10.15479/AT:IST-2009-0001
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2009 | Journal Article | IST-REx-ID: 9453 |
Hsieh, T.-F., Ibarra, C. A., Silva, P., Zemach, A., Eshed-Williams, L., Fischer, R. L., & Zilberman, D. (2009). Genome-wide demethylation of Arabidopsis endosperm. Science. American Association for the Advancement of Science. https://doi.org/10.1126/science.1172417
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2008 | Journal Article | IST-REx-ID: 9537
Zilberman, D. (2008). The evolving functions of DNA methylation. Current Opinion in Plant Biology. Elsevier . https://doi.org/10.1016/j.pbi.2008.07.004
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2008 | Journal Article | IST-REx-ID: 9457 |
Zilberman, D., Coleman-Derr, D., Ballinger, T., & Henikoff, S. (2008). Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks. Nature. Springer Nature. https://doi.org/10.1038/nature07324
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2008 | Journal Article | IST-REx-ID: 517
Barton, N. H. (2008). Identity and coalescence in structured populations: A commentary on “Inbreeding coefficients and coalescence times” by Montgomery Slatkin. Genetics Research. Cambridge University Press. https://doi.org/10.1017/S0016672308009683
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2007 | Journal Article | IST-REx-ID: 9487 |
Penterman, J., Zilberman, D., Huh, J. H., Ballinger, T., Henikoff, S., & Fischer, R. L. (2007). DNA demethylation in the Arabidopsis genome. Proceedings of the National Academy of Sciences. National Academy of Sciences. https://doi.org/10.1073/pnas.0701861104
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2007 | Other Publication | IST-REx-ID: 9504
Zilberman, D. (2007). The human promoter methylome. Nature Genetics (Vol. 39, pp. 442–443). Nature Publishing Group. https://doi.org/10.1038/ng0407-442
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2007 | Journal Article | IST-REx-ID: 9524 |
Zilberman, D., & Henikoff, S. (2007). Genome-wide analysis of DNA methylation patterns. Development. The Company of Biologists. https://doi.org/10.1242/dev.001131
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2007 | Journal Article | IST-REx-ID: 12201
Feng, X., & Dickinson, H. G. (2007). Packaging the male germline in plants. Trends in Genetics. Elsevier BV. https://doi.org/10.1016/j.tig.2007.08.005
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2006 | Journal Article | IST-REx-ID: 9505
Zilberman, D., Gehring, M., Tran, R. K., Ballinger, T., & Henikoff, S. (2006). Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription. Nature Genetics. Nature Publishing Group. https://doi.org/10.1038/ng1929
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2005 | Journal Article | IST-REx-ID: 9491 |
Tran, R. K., Henikoff, J. G., Zilberman, D., Ditt, R. F., Jacobsen, S. E., & Henikoff, S. (2005). DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes. Current Biology. Elsevier. https://doi.org/10.1016/j.cub.2005.01.008
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2005 | Journal Article | IST-REx-ID: 9514 |
Tran, R. K., Zilberman, D., de Bustos, C., Ditt, R. F., Henikoff, J. G., Lindroth, A. M., … Henikoff, S. (2005). Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis. Genome Biology. Springer Nature. https://doi.org/10.1186/gb-2005-6-11-r90
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2005 | Journal Article | IST-REx-ID: 9529
Zilberman, D., & Henikoff, S. (2005). Epigenetic inheritance in Arabidopsis: Selective silence. Current Opinion in Genetics and Development. Elsevier. https://doi.org/10.1016/j.gde.2005.07.002
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2004 | Journal Article | IST-REx-ID: 9493 |
Zilberman, D., Cao, X., Johansen, L. K., Xie, Z., Carrington, J. C., & Jacobsen, S. E. (2004). Role of Arabidopsis ARGONAUTE4 in RNA-directed DNA methylation triggered by inverted repeats. Current Biology. Elsevier. https://doi.org/10.1016/j.cub.2004.06.055
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2004 | Journal Article | IST-REx-ID: 9517 |
Xie, Z., Johansen, L. K., Gustafson, A. M., Kasschau, K. D., Lellis, A. D., Zilberman, D., … Carrington, J. C. (2004). Genetic and functional diversification of small RNA pathways in plants. PLoS Biology. Public Library of Science. https://doi.org/10.1371/journal.pbio.0020104
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2004 | Journal Article | IST-REx-ID: 9511 |
Zilberman, D., & Henikoff, S. (2004). Silencing of transposons in plant genomes: kick them when they’re down. Genome Biology. Springer Nature. https://doi.org/10.1186/gb-2004-5-12-249
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2004 | Journal Article | IST-REx-ID: 9454
Chan, S. W.-L., Zilberman, D., Xie, Zhixin, Johansen, Lisa K., Carrington, J. C., & Jacobsen, S. E. (2004). RNA silencing genes control de novo DNA methylation. Science. American Association for the Advancement of Science. https://doi.org/10.1126/science.1095989
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2004 | Journal Article | IST-REx-ID: 12203
Liao, Z., Chen, M., Gong, Y., Guo, L., Tan, Q., Feng, X., … Tang, K. (2004). A new geranylgeranyl Diphosphate synthase gene from Ginkgo biloba, which intermediates the biosynthesis of the key precursor for ginkgolides. DNA Sequence. Informa UK Limited. https://doi.org/10.1080/10425170410001667348
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2003 | Journal Article | IST-REx-ID: 9495 |
Cao, X., Aufsatz, W., Zilberman, D., Mette, M. F., Huang, M. S., Matzke, M., & Jacobsen, S. E. (2003). Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation. Current Biology. Elsevier. https://doi.org/10.1016/j.cub.2003.11.052
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2003 | Journal Article | IST-REx-ID: 9455
Zilberman, D., Cao, Xiaofeng, & Jacobsen, S. E. (2003). ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation. Science. American Association for the Advancement of Science. https://doi.org/10.1126/science.1079695
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2001 | Journal Article | IST-REx-ID: 9444
Lindroth, A. M., Cao, X., Jackson, J. P., Zilberman, D., McCallum, C. M., Henikoff, S., & Jacobsen, S. E. (2001). Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation. Science. American Association for the Advancement of Science. https://doi.org/10.1126/science.1059745
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