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4634 Publications
2017 | Journal Article | IST-REx-ID: 707 |

A tight estimate for the waist of the ball
A. Akopyan, R. Karasev, Bulletin of the London Mathematical Society 49 (2017) 690–693.
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A. Akopyan, R. Karasev, Bulletin of the London Mathematical Society 49 (2017) 690–693.
2017 | Journal Article | IST-REx-ID: 708 |

Different patterns of neuronal activity trigger distinct responses of oligodendrocyte precursor cells in the corpus callosum
B. Nagy, A. Hovhannisyan, R. Barzan, T. Chen, M. Kukley, PLoS Biology 15 (2017).
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B. Nagy, A. Hovhannisyan, R. Barzan, T. Chen, M. Kukley, PLoS Biology 15 (2017).
2017 | Journal Article | IST-REx-ID: 709
Gene expression changes of thermo sensitive transient receptor potential channels in obese mice
W. Sun, C. Li, Y. Zhang, C. Jiang, M.-Z. Zhai, Q. Zhou, L. Xiao, Q. Deng, Cell Biology International 41 (2017) 908–913.
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W. Sun, C. Li, Y. Zhang, C. Jiang, M.-Z. Zhai, Q. Zhou, L. Xiao, Q. Deng, Cell Biology International 41 (2017) 908–913.
2017 | Conference Paper | IST-REx-ID: 710 |

Renyi entropy estimation revisited
M. Obremski, M. Skórski, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2017.
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M. Obremski, M. Skórski, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2017.
2017 | Journal Article | IST-REx-ID: 713 |

Mapping the mouse Allelome reveals tissue specific regulation of allelic expression
D. Andergassen, C. Dotter, D. Wenzel, V. Sigl, P. Bammer, M. Muckenhuber, D. Mayer, T. Kulinski, H. Theussl, J. Penninger, C. Bock, D. Barlow, F. Pauler, Q. Hudson, ELife 6 (2017).
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D. Andergassen, C. Dotter, D. Wenzel, V. Sigl, P. Bammer, M. Muckenhuber, D. Mayer, T. Kulinski, H. Theussl, J. Penninger, C. Bock, D. Barlow, F. Pauler, Q. Hudson, ELife 6 (2017).
2017 | Conference Paper | IST-REx-ID: 711 |

Bidirectional nested weighted automata
K. Chatterjee, T.A. Henzinger, J. Otop, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2017.
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K. Chatterjee, T.A. Henzinger, J. Otop, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2017.
2017 | Journal Article | IST-REx-ID: 712 |

Weak–strong uniqueness of solutions to entropy dissipating reaction–diffusion equations
J.L. Fischer, Nonlinear Analysis: Theory, Methods and Applications 159 (2017) 181–207.
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J.L. Fischer, Nonlinear Analysis: Theory, Methods and Applications 159 (2017) 181–207.
2017 | Journal Article | IST-REx-ID: 714 |

HIV Tat excites D1 receptor-like expressing neurons from rat nucleus accumbens
G. Brailoiu, E. Deliu, J. Barr, L. Console Bram, A. Ciuciu, M. Abood, E. Unterwald, E. Brǎiloiu, Drug and Alcohol Dependence 178 (2017) 7–14.
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G. Brailoiu, E. Deliu, J. Barr, L. Console Bram, A. Ciuciu, M. Abood, E. Unterwald, E. Brǎiloiu, Drug and Alcohol Dependence 178 (2017) 7–14.
2017 | Journal Article | IST-REx-ID: 715
More excitation for Rett syndrome
G. Novarino, Science Translational Medicine 9 (2017).
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G. Novarino, Science Translational Medicine 9 (2017).
2017 | Journal Article | IST-REx-ID: 716 |

The complexity of mean-payoff pushdown games
K. Chatterjee, Y. Velner, Journal of the ACM 64 (2017) 34.
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K. Chatterjee, Y. Velner, Journal of the ACM 64 (2017) 34.
2017 | Journal Article | IST-REx-ID: 614 |

The deep conservation of the Lepidoptera Z chromosome suggests a non canonical origin of the W
C. Fraisse, M.A.L. Picard, B. Vicoso, Nature Communications 8 (2017).
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C. Fraisse, M.A.L. Picard, B. Vicoso, Nature Communications 8 (2017).
2017 | Journal Article | IST-REx-ID: 717 |

Hyperplane separation technique for multidimensional mean-payoff games
K. Chatterjee, Y. Velner, Journal of Computer and System Sciences 88 (2017) 236–259.
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K. Chatterjee, Y. Velner, Journal of Computer and System Sciences 88 (2017) 236–259.
2017 | Research Data | IST-REx-ID: 7163 |

Supplementary Files for "The deep conservation of the Lepidoptera Z chromosome suggests a non canonical origin of the W"
C. Fraisse, (2017).
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C. Fraisse, (2017).
2017 | Journal Article | IST-REx-ID: 719
Special issue: Synthesis and SYNT 2014
K. Chatterjee, R. Ehlers, Acta Informatica 54 (2017) 543–544.
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K. Chatterjee, R. Ehlers, Acta Informatica 54 (2017) 543–544.
2017 | Journal Article | IST-REx-ID: 720 |

Probabilistic models for neural populations that naturally capture global coupling and criticality
J. Humplik, G. Tkačik, PLoS Computational Biology 13 (2017).
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J. Humplik, G. Tkačik, PLoS Computational Biology 13 (2017).
2017 | Journal Article | IST-REx-ID: 721 |

Singularities of solutions to quadratic vector equations on the complex upper half plane
O.H. Ajanki, T.H. Krüger, L. Erdös, Communications on Pure and Applied Mathematics 70 (2017) 1672–1705.
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O.H. Ajanki, T.H. Krüger, L. Erdös, Communications on Pure and Applied Mathematics 70 (2017) 1672–1705.
2017 | Journal Article | IST-REx-ID: 722 |

Shaping 3D root system architecture
E. Morris, M. Griffiths, A. Golebiowska, S. Mairhofer, J. Burr Hersey, T. Goh, D. von Wangenheim, B. Atkinson, C. Sturrock, J. Lynch, K. Vissenberg, K. Ritz, D. Wells, S. Mooney, M. Bennett, Current Biology 27 (2017) R919–R930.
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E. Morris, M. Griffiths, A. Golebiowska, S. Mairhofer, J. Burr Hersey, T. Goh, D. von Wangenheim, B. Atkinson, C. Sturrock, J. Lynch, K. Vissenberg, K. Ritz, D. Wells, S. Mooney, M. Bennett, Current Biology 27 (2017) R919–R930.
2017 | Journal Article | IST-REx-ID: 725 |

Discrete modes of social information processing predict individual behavior of fish in a group
R. Harpaz, G. Tkačik, E. Schneidman, PNAS 114 (2017) 10149–10154.
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R. Harpaz, G. Tkačik, E. Schneidman, PNAS 114 (2017) 10149–10154.
2017 | Journal Article | IST-REx-ID: 724 |

Noninteracting central site model localization and logarithmic entanglement growth
D. Hetterich, M. Serbyn, F. Domínguez, F. Pollmann, B. Trauzettel, Physical Review B 96 (2017).
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D. Hetterich, M. Serbyn, F. Domínguez, F. Pollmann, B. Trauzettel, Physical Review B 96 (2017).
2017 | Journal Article | IST-REx-ID: 731
The science of love in ASD and ADHD
G. Novarino, Science Translational Medicine 9 (2017).
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G. Novarino, Science Translational Medicine 9 (2017).
2017 | Journal Article | IST-REx-ID: 7360 |

A synthetic mammalian therapeutic gene circuit for sensing and suppressing inflammation
A. Smole, D. Lainšček, U. Bezeljak, S. Horvat, R. Jerala, Molecular Therapy 25 (2017) 102–119.
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A. Smole, D. Lainšček, U. Bezeljak, S. Horvat, R. Jerala, Molecular Therapy 25 (2017) 102–119.
2017 | Conference Paper | IST-REx-ID: 750
Optimal geospatial volunteer allocation needs realistic distances
J. Pielorz, M. Prandtstetter, M. Straub, C. Lampert, in:, 2017 IEEE International Conference on Big Data, IEEE, 2017, pp. 3760–3763.
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J. Pielorz, M. Prandtstetter, M. Straub, C. Lampert, in:, 2017 IEEE International Conference on Big Data, IEEE, 2017, pp. 3760–3763.
2017 | Journal Article | IST-REx-ID: 795 |

Unified Hanani Tutte theorem
R. Fulek, J. Kynčl, D. Pálvölgyi, Electronic Journal of Combinatorics 24 (2017).
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R. Fulek, J. Kynčl, D. Pálvölgyi, Electronic Journal of Combinatorics 24 (2017).
2017 | Journal Article | IST-REx-ID: 797
Photonenblockade aufgelöst
J.M. Fink, Physik in Unserer Zeit 48 (2017) 111–113.
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J.M. Fink, Physik in Unserer Zeit 48 (2017) 111–113.
2017 | Journal Article | IST-REx-ID: 807 |

Der Springer Compact-Deal – Ein erster Einblick in die Evaluierung einer Offsetting-Vereinbarung
M. Andrae, M. Villányi, Mitteilungen Der Vereinigung Österreichischer Bibliothekarinnen Und Bibliothekare 70 (2017) 274–280.
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M. Andrae, M. Villányi, Mitteilungen Der Vereinigung Österreichischer Bibliothekarinnen Und Bibliothekare 70 (2017) 274–280.
2017 | Journal Article | IST-REx-ID: 825 |

Metadata for research data in practice
B. Petritsch, Mitteilungen Der Vereinigung Österreichischer Bibliothekarinnen & Bibliothekare 70 (2017) 200–207.
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B. Petritsch, Mitteilungen Der Vereinigung Österreichischer Bibliothekarinnen & Bibliothekare 70 (2017) 200–207.
2017 | Book Chapter | IST-REx-ID: 84
Computational topology for structural molecular biology
H. Edelsbrunner, P. Koehl, in:, C. Toth, J. O’Rourke, J. Goodman (Eds.), Handbook of Discrete and Computational Geometry, Third Edition, CRC Press, 2017, pp. 1709–1735.
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H. Edelsbrunner, P. Koehl, in:, C. Toth, J. O’Rourke, J. Goodman (Eds.), Handbook of Discrete and Computational Geometry, Third Edition, CRC Press, 2017, pp. 1709–1735.
2017 | Journal Article | IST-REx-ID: 9445 |

DDM1 and Lsh remodelers allow methylation of DNA wrapped in nucleosomes
D.B. Lyons, D. Zilberman, ELife 6 (2017).
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D.B. Lyons, D. Zilberman, ELife 6 (2017).
2017 | Book Chapter | IST-REx-ID: 957
Ancestral protein reconstruction and circular permutation for improving the stability and dynamic range of FRET sensors
B. Clifton, J. Whitfield, I. Sanchez-Romero, M. Herde, C. Henneberger, H.L. Janovjak, C. Jackson, in:, V. Stein (Ed.), Synthetic Protein Switches, Springer, 2017, pp. 71–87.
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B. Clifton, J. Whitfield, I. Sanchez-Romero, M. Herde, C. Henneberger, H.L. Janovjak, C. Jackson, in:, V. Stein (Ed.), Synthetic Protein Switches, Springer, 2017, pp. 71–87.
2017 | Conference Paper | IST-REx-ID: 963 |

Timed network games with clocks
G. Avni, S. Guha, O. Kupferman, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2017.
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G. Avni, S. Guha, O. Kupferman, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2017.
2017 | Research Data Reference | IST-REx-ID: 9709 |

Data from: Error-robust modes of the retinal population code
J. Prentice, O. Marre, M. Ioffe, A. Loback, G. Tkačik, M. Berry, (2017).
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J. Prentice, O. Marre, M. Ioffe, A. Loback, G. Tkačik, M. Berry, (2017).
2017 | Journal Article | IST-REx-ID: 541 |

Cell-to-cell variation and specialization in sugar metabolism in clonal bacterial populations
N. Nikolic, F. Schreiber, A. Dal Co, D. Kiviet, T. Bergmiller, S. Littmann, M. Kuypers, M. Ackermann, PLoS Genetics 13 (2017).
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N. Nikolic, F. Schreiber, A. Dal Co, D. Kiviet, T. Bergmiller, S. Littmann, M. Kuypers, M. Ackermann, PLoS Genetics 13 (2017).
2017 | Research Data Reference | IST-REx-ID: 9847 |

Supplementary materials and methods; Full data set from effects of mutations in phage restriction sites during escape from restriction–modification
M. Pleska, C.C. Guet, (2017).
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M. Pleska, C.C. Guet, (2017).
2017 | Research Data Reference | IST-REx-ID: 9845
Mathematical model
N. Nikolic, F. Schreiber, A. Dal Co, D. Kiviet, T. Bergmiller, S. Littmann, M. Kuypers, M. Ackermann, (2017).
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N. Nikolic, F. Schreiber, A. Dal Co, D. Kiviet, T. Bergmiller, S. Littmann, M. Kuypers, M. Ackermann, (2017).
2017 | Research Data Reference | IST-REx-ID: 9849
Modelling and simulation details
M. Lukacisinova, S. Novak, T. Paixao, (2017).
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M. Lukacisinova, S. Novak, T. Paixao, (2017).
2017 | Research Data Reference | IST-REx-ID: 9850
Extensions of the model
M. Lukacisinova, S. Novak, T. Paixao, (2017).
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M. Lukacisinova, S. Novak, T. Paixao, (2017).
2017 | Research Data Reference | IST-REx-ID: 9846
Supplementary methods
N. Nikolic, F. Schreiber, A. Dal Co, D. Kiviet, T. Bergmiller, S. Littmann, M. Kuypers, M. Ackermann, (2017).
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N. Nikolic, F. Schreiber, A. Dal Co, D. Kiviet, T. Bergmiller, S. Littmann, M. Kuypers, M. Ackermann, (2017).
2017 | Journal Article | IST-REx-ID: 680 |

Sensory noise predicts divisive reshaping of receptive fields
M.J. Chalk, P. Masset, B. Gutkin, S. Denève, PLoS Computational Biology 13 (2017).
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M.J. Chalk, P. Masset, B. Gutkin, S. Denève, PLoS Computational Biology 13 (2017).
2017 | Research Data Reference | IST-REx-ID: 9851
Heuristic prediction for multiple stresses
M. Lukacisinova, S. Novak, T. Paixao, (2017).
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M. Lukacisinova, S. Novak, T. Paixao, (2017).
2017 | Research Data Reference | IST-REx-ID: 9852
Resistance frequencies for different combination strategies
M. Lukacisinova, S. Novak, T. Paixao, (2017).
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M. Lukacisinova, S. Novak, T. Paixao, (2017).
2017 | Research Data Reference | IST-REx-ID: 9855
Supplementary appendix
M.J. Chalk, P. Masset, B. Gutkin, S. Denève, (2017).
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M.J. Chalk, P. Masset, B. Gutkin, S. Denève, (2017).
2017 | Conference Paper | IST-REx-ID: 941
JFIX: Semantics-based repair of Java programs via symbolic PathFinder
X. Le, D.H. Chu, D. Lo, C. Le Goues, W. Visser, in:, Proceedings of the 26th ACM SIGSOFT International Symposium on Software Testing and Analysis, ACM, 2017, pp. 376–379.
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X. Le, D.H. Chu, D. Lo, C. Le Goues, W. Visser, in:, Proceedings of the 26th ACM SIGSOFT International Symposium on Software Testing and Analysis, ACM, 2017, pp. 376–379.
2017 | Journal Article | IST-REx-ID: 9506 |

An evolutionary case for functional gene body methylation in plants and animals
D. Zilberman, Genome Biology 18 (2017).
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D. Zilberman, Genome Biology 18 (2017).
2017 | Book Chapter | IST-REx-ID: 958
Method for developing optical sensors using a synthetic dye fluorescent protein FRET pair and computational modeling and assessment
J. Mitchell, W. Zhang, M. Herde, C. Henneberger, H.L. Janovjak, M. O’Mara, C. Jackson, in:, V. Stein (Ed.), Synthetic Protein Switches, Springer, 2017, pp. 89–99.
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J. Mitchell, W. Zhang, M. Herde, C. Henneberger, H.L. Janovjak, M. O’Mara, C. Jackson, in:, V. Stein (Ed.), Synthetic Protein Switches, Springer, 2017, pp. 89–99.
2017 | Research Data Reference | IST-REx-ID: 9707 |

Data from: Ret and Etv4 promote directed movements of progenitor cells during renal branching morphogenesis
P. Riccio, C. Cebrián, H. Zong, S. Hippenmeyer, F. Costantini, (2017).
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P. Riccio, C. Cebrián, H. Zong, S. Hippenmeyer, F. Costantini, (2017).
2017 | Research Data Reference | IST-REx-ID: 9844
Source data for figures and tables
N. Nikolic, F. Schreiber, A. Dal Co, D. Kiviet, T. Bergmiller, S. Littmann, M. Kuypers, M. Ackermann, (2017).
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N. Nikolic, F. Schreiber, A. Dal Co, D. Kiviet, T. Bergmiller, S. Littmann, M. Kuypers, M. Ackermann, (2017).
2017 | Conference Abstract | IST-REx-ID: 12905 |

Scientific Computing at IST Austria
A. Schlögl, J. Kiss, in:, AHPC17 – Austrian HPC Meeting 2017, FSP Scientific Computing, 2017, p. 28.
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A. Schlögl, J. Kiss, in:, AHPC17 – Austrian HPC Meeting 2017, FSP Scientific Computing, 2017, p. 28.
2017 | Conference Paper | IST-REx-ID: 13160 |

Index appearance record for transforming Rabin automata into parity automata
J. Kretinsky, T. Meggendorfer, C. Waldmann, M. Weininger, in:, Tools and Algorithms for the Construction and Analysis of Systems, Springer, 2017, pp. 443–460.
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| arXiv
J. Kretinsky, T. Meggendorfer, C. Waldmann, M. Weininger, in:, Tools and Algorithms for the Construction and Analysis of Systems, Springer, 2017, pp. 443–460.
2017 | Conference Paper | IST-REx-ID: 950 |

Infinite-duration bidding games
G. Avni, T.A. Henzinger, V.K. Chonev, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2017.
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| arXiv
G. Avni, T.A. Henzinger, V.K. Chonev, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2017.
2017 | Conference Paper | IST-REx-ID: 683 |

A proof of the orbit conjecture for flipping edge labelled triangulations
A. Lubiw, Z. Masárová, U. Wagner, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2017.
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A. Lubiw, Z. Masárová, U. Wagner, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2017.