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4964 Publications
2011 | Journal Article | IST-REx-ID: 3405 |
H. L. Janovjak, G. Sandoz, and E. Isacoff, “Modern ionotropic glutamate receptor with a K+ selectivity signature sequence,” Nature Communications, vol. 2, no. 232. Nature Publishing Group, pp. 1–6, 2011.
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2011 | Journal Article | IST-REx-ID: 3505 |
M. K. Sixt and T. Lämmermann, “In vitro analysis of chemotactic leukocyte migration in 3D environments,” Cell Migration, vol. 769. Springer, pp. 149–165, 2011.
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2011 | Journal Article | IST-REx-ID: 3784 |
F. Palero, G. Guerao, P. Clark, and P. Abello, “Scyllarus arctus (Crustacea: Decapoda: Scyllaridae) final stage phyllosoma identified by DNA analysis, with morphological description,” Journal of the Marine Biological Association of the United Kingdom, vol. 91, no. 2. Cambridge University Press, pp. 485–492, 2011.
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2011 | Journal Article | IST-REx-ID: 3781
B. T. Fasy, “The difference in length of curves in R^n,” Acta Sci. Math. (Szeged), vol. 77, no. 1–2. Szegedi Tudományegyetem, pp. 359–367, 2011.
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2011 | Book Chapter | IST-REx-ID: 3796 |
H. Edelsbrunner and M. Kerber, “Covering and packing with spheres by diagonal distortion in R^n,” in Rainbow of Computer Science, vol. 6570, C. Calude, G. Rozenberg, and A. Salomaa, Eds. Springer, 2011, pp. 20–35.
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2011 | Journal Article | IST-REx-ID: 3381 |
T. A. Henzinger, B. Jobstmann, and V. Wolf, “Formalisms for specifying Markovian population models,” IJFCS: International Journal of Foundations of Computer Science, vol. 22, no. 4. World Scientific Publishing, pp. 823–841, 2011.
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2011 | Journal Article | IST-REx-ID: 3315 |
K. Chatterjee, T. A. Henzinger, and V. Prabhu, “Timed parity games: Complexity and robustness,” Logical Methods in Computer Science, vol. 7, no. 4. International Federation of Computational Logic, 2011.
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2011 | Conference Paper | IST-REx-ID: 3270
C. Chen and M. Kerber, “Persistent homology computation with a twist,” presented at the EuroCG: European Workshop on Computational Geometry, Morschach, Switzerland, 2011, pp. 197–200.
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2011 | Conference Paper | IST-REx-ID: 3298 |
K. Raveendran, C. Wojtan, and G. Turk, “Hybrid smoothed particle hydrodynamics,” presented at the SCA: ACM SIGGRAPH/Eurographics Symposium on Computer animation, Vancouver, Canada, 2011, pp. 33–42.
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2011 | Conference Paper | IST-REx-ID: 3297 |
C. Wojtan, M. Müller Fischer, and T. Brochu, “Liquid simulation with mesh-based surface tracking,” presented at the SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques, Vancouver, BC, Canada, 2011.
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2011 | Journal Article | IST-REx-ID: 3290 |
K. Lohse, R. Harrison, and N. H. Barton, “A general method for calculating likelihoods under the coalescent process,” Genetics, vol. 189, no. 3. Genetics Society of America, pp. 977–987, 2011.
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2011 | Conference Poster | IST-REx-ID: 3312 |
Y. Zheng, S. Gu, H. Edelsbrunner, C. Tomasi, and P. Benfey, Detailed reconstruction of 3D plant root shape. IEEE, 2011.
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2011 | Conference Paper | IST-REx-ID: 3313 |
C. Chen and H. Edelsbrunner, “Diffusion runs low on persistence fast,” in Proceedings of the IEEE International Conference on Computer Vision, Barcelona, Spain, 2011.
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2011 | Book Chapter | IST-REx-ID: 3311 |
H. Edelsbrunner, “Alpha shapes - a survey,” in Tessellations in the Sciences: Virtues, Techniques and Applications of Geometric Tilings, R. van de Weygaert, G. Vegter, J. Ritzerveld, and V. Icke, Eds. Springer.
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2011 | Conference Paper | IST-REx-ID: 3326 |
S. Almagor, U. Boker, and O. Kupferman, “What’s decidable about weighted automata ,” presented at the ATVA: Automated Technology for Verification and Analysis, Taipei, Taiwan, 2011, vol. 6996, pp. 482–491.
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2011 | Conference Paper | IST-REx-ID: 3324 |
R. Piskac and T. Wies, “Decision procedures for automating termination proofs,” presented at the VMCAI: Verification Model Checking and Abstract Interpretation, Texas, USA, 2011, vol. 6538, pp. 371–386.
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2011 | Preprint | IST-REx-ID: 3339 |
K. Chatterjee, L. De Alfaro, and R. Pritam, “Magnifying lens abstraction for stochastic games with discounted and long-run average objectives,” arXiv. ArXiv, 2011.
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| arXiv
2011 | Conference Paper | IST-REx-ID: 3342 |
K. Chatterjee, M. H. Henzinger, M. Joglekar, and S. Nisarg, “Symbolic algorithms for qualitative analysis of Markov decision processes with Büchi objectives,” presented at the CAV: Computer Aided Verification, Snowbird, USA, 2011, vol. 6806, pp. 260–276.
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| arXiv
2011 | Conference Paper | IST-REx-ID: 3347 |
K. Chatterjee and N. Fijalkow, “Finitary languages,” presented at the LATA: Language and Automata Theory and Applications, Tarragona, Spain, 2011, vol. 6638, pp. 216–226.
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| arXiv
2011 | Conference Paper | IST-REx-ID: 3346 |
T. Brázdil, V. Brožek, K. Chatterjee, V. Forejt, and A. Kučera, “Two views on multiple mean payoff objectives in Markov Decision Processes,” presented at the LICS: Logic in Computer Science, Toronto, Canada, 2011.
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2011 | Conference Paper | IST-REx-ID: 3348 |
K. Chatterjee and V. Prabhu, “Synthesis of memory efficient real time controllers for safety objectives,” presented at the HSCC: Hybrid Systems - Computation and Control, Chicago, USA, 2011, pp. 221–230.
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2011 | Conference Paper | IST-REx-ID: 3343 |
K. Chatterjee and M. H. Henzinger, “Faster and dynamic algorithms for maximal end-component decomposition and related graph problems in probabilistic verification,” presented at the SODA: Symposium on Discrete Algorithms, San Francisco, SA, United States, 2011, pp. 1318–1336.
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2011 | Conference Paper | IST-REx-ID: 3360 |
U. Boker and T. A. Henzinger, “Determinizing discounted-sum automata,” presented at the CSL: Computer Science Logic, Bergen, Norway, 2011, vol. 12, pp. 82–96.
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2011 | Conference Paper | IST-REx-ID: 3361 |
P. Cerny, K. Chatterjee, and T. A. Henzinger, “The complexity of quantitative information flow problems,” presented at the CSF: Computer Security Foundations, Cernay-la-Ville, France, 2011, pp. 205–217.
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2011 | Conference Paper | IST-REx-ID: 3358 |
T. A. Henzinger, V. Singh, T. Wies, and D. Zufferey, “Scheduling large jobs by abstraction refinement,” presented at the EuroSys, Salzburg, Austria, 2011, pp. 329–342.
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2011 | Journal Article | IST-REx-ID: 3379 |
R. Row, J.-L. Maître, B. Martin, P. Stockinger, C.-P. J. Heisenberg, and D. Kimelman, “Completion of the epithelial to mesenchymal transition in zebrafish mesoderm requires Spadetail,” Developmental Biology, vol. 354, no. 1. Elsevier, pp. 102–110, 2011.
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| PubMed | Europe PMC
2011 | Journal Article | IST-REx-ID: 3376 |
M. T. Bollenbach and R. Kishony, “Resolution of gene regulatory conflicts caused by combinations of antibiotics,” Molecular Cell, vol. 42, no. 4. Cell Press, pp. 413–425, 2011.
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2011 | Journal Article | IST-REx-ID: 3380 |
S. Logeswaran and N. H. Barton, “Mapping Mendelian traits in asexual progeny using changes in marker allele frequency,” Genetical Research, vol. 93, no. 3. Cambridge University Press, pp. 221–232, 2011.
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2011 | Journal Article | IST-REx-ID: 3377 |
H. Edelsbrunner, D. Morozov, and A. Patel, “Quantifying transversality by measuring the robustness of intersections,” Foundations of Computational Mathematics, vol. 11, no. 3. Springer, pp. 345–361, 2011.
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2011 | Journal Article | IST-REx-ID: 3388 |
L. V. Ugelvig, P. Nielsen, J. Boomsma, and D. Nash, “Reconstructing eight decades of genetic variation in an isolated Danish population of the large blue butterfly Maculinea arion,” BMC Evolutionary Biology, vol. 11, no. 201. BioMed Central, 2011.
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2011 | Journal Article | IST-REx-ID: 3384 |
G. Tkačik et al., “Natural images from the birthplace of the human eye,” PLoS One, vol. 6, no. 6. Public Library of Science, 2011.
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2011 | Journal Article | IST-REx-ID: 3387 |
A. Kupczok, “Split based computation of majority rule supertrees,” BMC Evolutionary Biology, vol. 11, no. 205. BioMed Central, 2011.
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2011 | Journal Article | IST-REx-ID: 3399 |
S. Cremer, A. Schrempf, and J. Heinze, “Competition and opportunity shape the reproductive tactics of males in the ant Cardiocondyla obscurior,” PLoS One, vol. 6, no. 3. Public Library of Science, 2011.
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2011 | Journal Article | IST-REx-ID: 3771
A. Pavan, F. Martins, F. Santos, A. Ditchfield, and R. A. Fernandes Redondo, “Patterns of diversification in two species of short-tailed bats (Carollia Gray, 1838): the effects of historical fragmentation of Brazilian rainforests.,” Biological Journal of the Linnean Society, vol. 102, no. 3. Wiley-Blackwell, pp. 527–539, 2011.
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2011 | Journal Article | IST-REx-ID: 3778 |
N. H. Barton, “Estimating linkage disequilibria,” Heredity, vol. 106, no. 2. Nature Publishing Group, pp. 205–206, 2011.
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2011 | Journal Article | IST-REx-ID: 3364 |
F. Didier, T. A. Henzinger, M. Mateescu, and V. Wolf, “Approximation of event probabilities in noisy cellular processes,” Theoretical Computer Science, vol. 412, no. 21. Elsevier, pp. 2128–2141, 2011.
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2011 | Journal Article | IST-REx-ID: 469 |
N. Vyleta and S. Smith, “Spontaneous glutamate release is independent of calcium influx and tonically activated by the calcium-sensing receptor,” European Journal of Neuroscience, vol. 31, no. 12. Wiley-Blackwell, pp. 4593–4606, 2011.
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2011 | Journal Article | IST-REx-ID: 490 |
A. Schlögl, C. Vidaurre, and T. Sander, “BioSig: The free and open source software library for biomedical signal processing,” Computational Intelligence and Neuroscience, vol. 2011. Hindawi Publishing Corporation, 2011.
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2011 | Journal Article | IST-REx-ID: 518 |
D. Schraivogel et al., “CAMTA1 is a novel tumour suppressor regulated by miR-9/9 * in glioblastoma stem cells,” EMBO Journal, vol. 30, no. 20. Wiley-Blackwell, pp. 4309–4322, 2011.
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2011 | Journal Article | IST-REx-ID: 531 |
R. Guerraoui, T. A. Henzinger, and V. Singh, “Verification of STM on relaxed memory models,” Formal Methods in System Design, vol. 39, no. 3. Springer, pp. 297–331, 2011.
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2011 | Technical Report | IST-REx-ID: 5379 |
K. Chatterjee and M. H. Henzinger, An O(n2) time algorithm for alternating Büchi games. IST Austria, 2011.
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2011 | Technical Report | IST-REx-ID: 5381 |
K. Chatterjee and L. Doyen, Partial-observation stochastic games: How to win when belief fails. IST Austria, 2011.
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2011 | Technical Report | IST-REx-ID: 5380 |
K. Chatterjee, Bounded rationality in concurrent parity games. IST Austria, 2011.
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2011 | Technical Report | IST-REx-ID: 5382 |
K. Chatterjee, Robustness of structurally equivalent concurrent parity games. IST Austria, 2011.
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2011 | Preprint | IST-REx-ID: 3338 |
K. Chatterjee, “Bounded rationality in concurrent parity games,” arXiv. ArXiv, pp. 1–51, 2011.
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| arXiv
2011 | Conference Paper | IST-REx-ID: 3356 |
U. Boker, K. Chatterjee, T. A. Henzinger, and O. Kupferman, “Temporal specifications with accumulative values,” presented at the LICS: Logic in Computer Science, Toronto, Canada, 2011.
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2011 | Technical Report | IST-REx-ID: 5385 |
U. Boker, K. Chatterjee, T. A. Henzinger, and O. Kupferman, Temporal specifications with accumulative values. IST Austria, 2011.
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2011 | Technical Report | IST-REx-ID: 5386 |
C. Chen, D. Freedman, and C. Lampert, Enforcing topological constraints in random field image segmentation. IST Austria, 2011.
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2011 | Technical Report | IST-REx-ID: 5383 |
T. Wies, M. Muñiz, and V. Kuncak, On an efficient decision procedure for imperative tree data structures. IST Austria, 2011.
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2011 | Technical Report | IST-REx-ID: 5384 |
K. Chatterjee and M. Tracol, Decidable problems for probabilistic automata on infinite words. IST Austria, 2011.
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2011 | Conference Paper | IST-REx-ID: 3336
C. Chen, D. Freedman, and C. Lampert, “Enforcing topological constraints in random field image segmentation,” in CVPR: Computer Vision and Pattern Recognition, Colorado Springs, CO, United States, 2011, pp. 2089–2096.
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2011 | Conference Paper | IST-REx-ID: 3323
T. Wies, M. Muñiz, and V. Kuncak, “An efficient decision procedure for imperative tree data structures,” presented at the CADE 23: Automated Deduction , Wrocław, Poland, 2011, vol. 6803, pp. 476–491.
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2011 | Conference Paper | IST-REx-ID: 3366 |
P. Cerny, K. Chatterjee, T. A. Henzinger, A. Radhakrishna, and R. Singh, “Quantitative synthesis for concurrent programs,” presented at the CAV: Computer Aided Verification, Snowbird, USA, 2011, vol. 6806, pp. 243–259.
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2011 | Conference Paper | IST-REx-ID: 3345 |
K. Chatterjee and L. Doyen, “Energy and mean-payoff parity Markov Decision Processes,” presented at the MFCS: Mathematical Foundations of Computer Science, Warsaw, Poland, 2011, vol. 6907, pp. 206–218.
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| arXiv
2011 | Technical Report | IST-REx-ID: 5387 |
K. Chatterjee and L. Doyen, Energy and mean-payoff parity Markov decision processes. IST Austria, 2011.
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2011 | Journal Article | IST-REx-ID: 6496 |
H. Park, P. Oikonomou, C. C. Guet, and P. Cluzel, “Noise underlies switching behavior of the bacterial flagellum,” Biophysical Journal, vol. 101, no. 10. Elsevier, pp. 2336–2340, 2011.
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| PubMed | Europe PMC
2011 | Journal Article | IST-REx-ID: 9483 |
T.-F. Hsieh et al., “Regulation of imprinted gene expression in Arabidopsis endosperm,” Proceedings of the National Academy of Sciences, vol. 108, no. 5. National Academy of Sciences, pp. 1755–1762, 2011.
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2011 | Other Publication | IST-REx-ID: 9522 |
D. Zilberman, Balancing parental contributions in plant embryonic gene activation, vol. 20, no. 6. Elsevier, 2011, pp. 735–736.
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2011 | Conference Paper | IST-REx-ID: 9648 |
R. Gonzalez-Diaz, A. Ion, M. J. Jimenez, and R. Poyatos, “Incremental-decremental algorithm for computing AT-models and persistent homology,” in Computer Analysis of Images and Patterns, Seville, Spain, 2011, vol. 6854, pp. 286–293.
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2011 | Journal Article | IST-REx-ID: 3395
F. Palero, P. Abello, E. Macpherson, M. Beaumont, and M. Pascual, “Effect of oceanographic barriers and overfishing on the population genetic structure of the European spiny lobster Palinurus elephas,” Biological Journal of the Linnean Society, vol. 104, no. 2. Wiley-Blackwell, pp. 407–418, 2011.
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2011 | Research Data Reference | IST-REx-ID: 9762 |
F. Palero, P. Abello, E. Macpherson, M. Beaumont, and M. Pascual, “Data from: Effect of oceanographic barriers and overfishing on the population genetic structure of the European spiny lobster (Palinurus elephas).” IST Austria, 2011.
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2011 | Thesis | IST-REx-ID: 3275 |
K. Schumann, “The role of chemotactic gradients in dendritic cell migration,” Institute of Science and Technology Austria, 2011.
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2011 | Thesis | IST-REx-ID: 3273
J.-L. Maître, “Mechanics of adhesion and de‐adhesion in zebrafish germ layer progenitors,” Institute of Science and Technology Austria, 2011.
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2011 | Conference Paper | IST-REx-ID: 3163
C. Lampert, “Maximum margin multi-label structured prediction,” presented at the NIPS: Neural Information Processing Systems, Granada, Spain, 2011.
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2011 | Conference Poster | IST-REx-ID: 3322
C. Lampert, Maximum margin multi label structured prediction. Neural Information Processing Systems Foundation, 2011.
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2011 | Journal Article | IST-REx-ID: 3320 |
S. Nowozin and C. Lampert, “Structured learning and prediction in computer vision,” Foundations and Trends in Computer Graphics and Vision, vol. 6, no. 3–4. Now Publishers, pp. 185–365, 2011.
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2011 | Conference Paper | IST-REx-ID: 3319
N. Quadrianto and C. Lampert, “Learning multi-view neighborhood preserving projections,” presented at the ICML: International Conference on Machine Learning, Bellevue, United States, 2011, pp. 425–432.
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2011 | Journal Article | IST-REx-ID: 3373 |
M. Jahnel, M. Behrndt, A. Jannasch, E. Schaeffer, and S. Grill, “Measuring the complete force field of an optical trap,” Optics Letters, vol. 36, no. 7. Optica Publishing Group, pp. 1260–1262, 2011.
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2011 | Journal Article | IST-REx-ID: 3375 |
H. de Vladar and N. H. Barton, “The statistical mechanics of a polygenic character under stabilizing selection mutation and drift,” Journal of the Royal Society Interface, vol. 8, no. 58. The Royal Society, pp. 720–739, 2011.
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2011 | Journal Article | IST-REx-ID: 3393 |
N. H. Barton and M. Turelli, “Spatial waves of advance with bistable dynamics: Cytoplasmic and genetic analogues of Allee effects,” American Naturalist, vol. 178, no. 3. The University of Chicago Press, pp. E48–E75, 2011.
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2010 | Conference Paper | IST-REx-ID: 10908 |
R. Blanc, T. A. Henzinger, T. Hottelier, and L. Kovács, “ABC: Algebraic Bound Computation for loops,” in Logic for Programming, Artificial Intelligence, and Reasoning, Dakar, Senegal, 2010, vol. 6355, pp. 103–118.
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2010 | Journal Article | IST-REx-ID: 2409 |
A. Kupczok, H. Schmidt, and A. Von Haeseler, “Accuracy of phylogeny reconstruction methods combining overlapping gene data sets ,” Algorithms for Molecular Biology, vol. 5, no. 1. BioMed Central, 2010.
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2010 | Conference Paper | IST-REx-ID: 10909
C. Chen and D. Freedman, “Hardness results for homology localization,” in Proceedings of the 2010 Annual ACM-SIAM Symposium on Discrete Algorithms, Austin, TX, United States, 2010, pp. 1594–1604.
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2010 | Journal Article | IST-REx-ID: 3303 |
D. Weissman, M. Feldman, and D. Fisher, “The rate of fitness-valley crossing in sexual populations,” Genetics, vol. 186, no. 4. Genetics Society of America, pp. 1389–1410, 2010.
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2010 | Journal Article | IST-REx-ID: 3604
H. Senn, S. Goodman, G. Swanson, N. H. Barton, and J. Pemberton, “Investigating temporal changes in hybridisation and introgression between invasive sika (Cervus nippon) and native red deer (Cervus elaphus) on the Kintyre Peninsula, Scotland,” Molecular Ecology, vol. 19, no. 5. Wiley-Blackwell, pp. 910–924, 2010.
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2010 | Conference Paper | IST-REx-ID: 3719 |
J. Feret, T. A. Henzinger, H. Koeppl, and T. Petrov, “Lumpability abstractions of rule-based systems,” presented at the MECBIC: Membrane Computing and Biologically Inspired Process Calculi, Jena, Germany, 2010, vol. 40, pp. 142–161.
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| arXiv
2010 | Book Chapter | IST-REx-ID: 3795 |
H. Edelsbrunner, D. Morozov, and A. Patel, “The stability of the apparent contour of an orientable 2-manifold,” in Topological Data Analysis and Visualization: Theory, Algorithms and Applications, Springer, 2010, pp. 27–42.
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2010 | Conference Paper | IST-REx-ID: 3794
C. Lampert and O. Krömer, “Weakly-paired maximum covariance analysis for multimodal dimensionality reduction and transfer learning,” presented at the ECCV: European Conference on Computer Vision, Heraklion, Crete, Greece, 2010, vol. 6312, pp. 566–579.
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2010 | Journal Article | IST-REx-ID: 3832 |
J. Guzmán and P. M. Jonas, “Beyond TARPs: The growing list of auxiliary AMPAR subunits,” Neuron, vol. 66, no. 1. Elsevier, pp. 8–10, 2010.
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