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5735 Publications
2020 | Published | Journal Article | IST-REx-ID: 8707 |

CHESS enables quantitative comparison of chromatin contact data and automatic feature extraction
S. Galan, N.N. Machnik, K. Kruse, N. Díaz, M.A. Marti-Renom, J.M. Vaquerizas, Nature Genetics 52 (2020) 1247–1255.
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S. Galan, N.N. Machnik, K. Kruse, N. Díaz, M.A. Marti-Renom, J.M. Vaquerizas, Nature Genetics 52 (2020) 1247–1255.
2020 | Published | Thesis | IST-REx-ID: 7525 |

Localization and functional role of Cav2.3 in the medial habenula to interpeduncular nucleus pathway
P. Bhandari, Localization and Functional Role of Cav2.3 in the Medial Habenula to Interpeduncular Nucleus Pathway, Institute of Science and Technology Austria, 2020.
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P. Bhandari, Localization and Functional Role of Cav2.3 in the Medial Habenula to Interpeduncular Nucleus Pathway, Institute of Science and Technology Austria, 2020.
2020 | Published | Journal Article | IST-REx-ID: 7427 |

Salicylic acid targets protein phosphatase 2A to attenuate growth in plants
S. Tan, M.F. Abas, I. Verstraeten, M. Glanc, G. Molnar, J. Hajny, P. Lasák, I. Petřík, E. Russinova, J. Petrášek, O. Novák, J. Pospíšil, J. Friml, Current Biology 30 (2020) 381–395.e8.
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S. Tan, M.F. Abas, I. Verstraeten, M. Glanc, G. Molnar, J. Hajny, P. Lasák, I. Petřík, E. Russinova, J. Petrášek, O. Novák, J. Pospíšil, J. Friml, Current Biology 30 (2020) 381–395.e8.
2020 | Published | Journal Article | IST-REx-ID: 7500 |

Auxin canalization and vascular tissue formation by TIR1/AFB-mediated auxin signaling in arabidopsis
E. Mazur, I. Kulik, J. Hajny, J. Friml, New Phytologist 226 (2020) 1375–1383.
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E. Mazur, I. Kulik, J. Hajny, J. Friml, New Phytologist 226 (2020) 1375–1383.
2020 | Published | Thesis | IST-REx-ID: 8822 |

Identification and characterization of the molecular machinery of auxin-dependent canalization during vasculature formation and regeneration
J. Hajny, Identification and Characterization of the Molecular Machinery of Auxin-Dependent Canalization during Vasculature Formation and Regeneration, Institute of Science and Technology Austria, 2020.
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J. Hajny, Identification and Characterization of the Molecular Machinery of Auxin-Dependent Canalization during Vasculature Formation and Regeneration, Institute of Science and Technology Austria, 2020.
2020 | Published | Journal Article | IST-REx-ID: 8190 |

Zena Werb (1945-2020): Cell biology in context
M.K. Sixt, A. Huttenlocher, The Journal of Cell Biology 219 (2020).
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M.K. Sixt, A. Huttenlocher, The Journal of Cell Biology 219 (2020).
2020 | Published | Journal Article | IST-REx-ID: 8986 |

Functional innovations of PIN auxin transporters mark crucial evolutionary transitions during rise of flowering plants
Y. Zhang, L. Rodriguez Solovey, L. Li, X. Zhang, J. Friml, Science Advances 6 (2020).
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Y. Zhang, L. Rodriguez Solovey, L. Li, X. Zhang, J. Friml, Science Advances 6 (2020).
2020 | Published | Journal Article | IST-REx-ID: 8283 |

AcoMYB4, an Ananas comosus L. MYB transcription factor, functions in osmotic stress through negative regulation of ABA signaling
Chen, Huihuang, AcoMYB4, an Ananas comosus L. MYB transcription factor, functions in osmotic stress through negative regulation of ABA signaling. International Journal of Molecular Sciences 21 (16). 2020
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Chen, Huihuang, AcoMYB4, an Ananas comosus L. MYB transcription factor, functions in osmotic stress through negative regulation of ABA signaling. International Journal of Molecular Sciences 21 (16). 2020
2020 | Published | Journal Article | IST-REx-ID: 8532 |

Deep learning-assisted high-throughput analysis of freeze-fracture replica images applied to glutamate receptors and calcium channels at hippocampal synapses
Kleindienst, David, Deep learning-assisted high-throughput analysis of freeze-fracture replica images applied to glutamate receptors and calcium channels at hippocampal synapses. International Journal of Molecular Sciences 21 (18). 2020
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Kleindienst, David, Deep learning-assisted high-throughput analysis of freeze-fracture replica images applied to glutamate receptors and calcium channels at hippocampal synapses. International Journal of Molecular Sciences 21 (18). 2020
2020 | Published | Journal Article | IST-REx-ID: 7161 |

Inertial projection-type methods for solving quasi-variational inequalities in real Hilbert spaces
Y. Shehu, A. Gibali, S. Sagratella, Journal of Optimization Theory and Applications 184 (2020) 877–894.
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Y. Shehu, A. Gibali, S. Sagratella, Journal of Optimization Theory and Applications 184 (2020) 877–894.
2020 | Published | Journal Article | IST-REx-ID: 8002 |

Wounding-induced changes in cellular pressure and localized auxin signalling spatially coordinate restorative divisions in roots
L. Hörmayer, J.C. Montesinos López, P. Marhavá, E. Benková, S. Yoshida, J. Friml, Proceedings of the National Academy of Sciences of the United States of America 117 (2020).
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L. Hörmayer, J.C. Montesinos López, P. Marhavá, E. Benková, S. Yoshida, J. Friml, Proceedings of the National Academy of Sciences of the United States of America 117 (2020).
2020 | Published | Journal Article | IST-REx-ID: 8139 |

Experimental toolbox for quantitative evaluation of clathrin-mediated endocytosis in the plant model Arabidopsis
A.J. Johnson, N. Gnyliukh, W. Kaufmann, M. Narasimhan, G. Vert, S. Bednarek, J. Friml, Journal of Cell Science 133 (2020).
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A.J. Johnson, N. Gnyliukh, W. Kaufmann, M. Narasimhan, G. Vert, S. Bednarek, J. Friml, Journal of Cell Science 133 (2020).
2020 | Published | Journal Article | IST-REx-ID: 6918 |

An efficient algorithm for computing network reliability in small treewidth
A.K. Goharshady, F. Mohammadi, Reliability Engineering and System Safety 193 (2020).
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A.K. Goharshady, F. Mohammadi, Reliability Engineering and System Safety 193 (2020).
2020 | Published | Conference Paper | IST-REx-ID: 7810 |

Optimal and perfectly parallel algorithms for on-demand data-flow analysis
K. Chatterjee, A.K. Goharshady, R. Ibsen-Jensen, A. Pavlogiannis, in:, European Symposium on Programming, Springer Nature, 2020, pp. 112–140.
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K. Chatterjee, A.K. Goharshady, R. Ibsen-Jensen, A. Pavlogiannis, in:, European Symposium on Programming, Springer Nature, 2020, pp. 112–140.
2020 | Published | Conference Paper | IST-REx-ID: 8728 |

Faster algorithms for quantitative analysis of MCs and MDPs with small treewidth
A. Asadi, K. Chatterjee, A.K. Goharshady, K. Mohammadi, A. Pavlogiannis, in:, Automated Technology for Verification and Analysis, Springer Nature, 2020, pp. 253–270.
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A. Asadi, K. Chatterjee, A.K. Goharshady, K. Mohammadi, A. Pavlogiannis, in:, Automated Technology for Verification and Analysis, Springer Nature, 2020, pp. 253–270.
2020 | Published | Conference Paper | IST-REx-ID: 8089 |

Polynomial invariant generation for non-deterministic recursive programs
K. Chatterjee, H. Fu, A.K. Goharshady, E.K. Goharshady, in:, Proceedings of the 41st ACM SIGPLAN Conference on Programming Language Design and Implementation, Association for Computing Machinery, 2020, pp. 672–687.
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K. Chatterjee, H. Fu, A.K. Goharshady, E.K. Goharshady, in:, Proceedings of the 41st ACM SIGPLAN Conference on Programming Language Design and Implementation, Association for Computing Machinery, 2020, pp. 672–687.
2020 | Published | Journal Article | IST-REx-ID: 7387 |

Diffusion and capture permits dynamic coupling between treadmilling FtsZ filaments and cell division proteins
N.S. Baranova, P. Radler, V.M. Hernández-Rocamora, C. Alfonso, M.D. Lopez Pelegrin, G. Rivas, W. Vollmer, M. Loose, Nature Microbiology 5 (2020) 407–417.
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N.S. Baranova, P. Radler, V.M. Hernández-Rocamora, C. Alfonso, M.D. Lopez Pelegrin, G. Rivas, W. Vollmer, M. Loose, Nature Microbiology 5 (2020) 407–417.
2020 | Published | Preprint | IST-REx-ID: 9750 |

Tension-dependent stabilization of E-cadherin limits cell-cell contact expansion
J. Slovakova, M.K. Sikora, S. Caballero Mancebo, G. Krens, W. Kaufmann, K. Huljev, C.-P.J. Heisenberg, BioRxiv (2020).
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J. Slovakova, M.K. Sikora, S. Caballero Mancebo, G. Krens, W. Kaufmann, K. Huljev, C.-P.J. Heisenberg, BioRxiv (2020).
2020 | Published | Conference Paper | IST-REx-ID: 9198 |

Landscape connectivity and dropout stability of SGD solutions for over-parameterized neural networks
A. Shevchenko, M. Mondelli, in:, Proceedings of the 37th International Conference on Machine Learning, ML Research Press, 2020, pp. 8773–8784.
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A. Shevchenko, M. Mondelli, in:, Proceedings of the 37th International Conference on Machine Learning, ML Research Press, 2020, pp. 8773–8784.
2020 | Published | Journal Article | IST-REx-ID: 7426 |

Abstraction based verification of stability of polyhedral switched systems
M. Garcia Soto, P. Prabhakar, Nonlinear Analysis: Hybrid Systems 36 (2020).
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M. Garcia Soto, P. Prabhakar, Nonlinear Analysis: Hybrid Systems 36 (2020).