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6746 Publications

2025 | Published | Journal Article | IST-REx-ID: 19785 |

Token-driven totally asymmetric simple exclusion processes
B. Kavcic, G. Tkačik, Physical Review E 111 (2025).

[Published Version] View | Files available | DOI | WoS

earlier version | 2025 | Research Data | IST-REx-ID: 20641 |

Data for "Aromatic Ring Flips Reveal Reshaping of Protein Dynamics in Crystals and Complexes"
L.M. Becker, P. Schanda, (2025).

[Published Version] View | Files available | DOI

2025 | Published | Journal Article | IST-REx-ID: 18705 |

On a question of Davenport and diagonal cubic forms over Fq(t)
J. Glas, L. Hochfilzer, Mathematische Annalen 391 (2025) 5485–5533.

[Published Version] View | Files available | DOI | WoS | arXiv

2025 | Published | Journal Article | IST-REx-ID: 18820 |

Automatic feature selection and weighting in molecular systems using Differentiable Information Imbalance
R. Wild, F. Wodaczek, V. Del Tatto, B. Cheng, A. Laio, Nature Communications 16 (2025).

2025 | Published | Journal Article | IST-REx-ID: 20926 |

A universal augmentation framework for long-range electrostatics in machine learning interatomic potentials
D. Kim, X. Wang, S. Vargas, P. Zhong, D.S. King, T.J. Inizan, B. Cheng, Journal of Chemical Theory and Computation 21 (2025) 12709–12724.

Machine learning interatomic potential can infer electrical response
P. Zhong, D. Kim, D.S. King, B. Cheng, Npj Computational Materials 11 (2025).

[Published Version] View | Files available | DOI

Lattice distortion leads to glassy thermal transport in crystalline Cs3Bi2I6Cl3
Z. Zeng, Z. Fan, M. Simoncelli, C. Chen, T. Liang, Y. Chen, G. Thornton, B. Cheng, Proceedings of the National Academy of Sciences 122 (2025) e2415664122.

2025 | Published | Journal Article | IST-REx-ID: 20011 |

Thermal transport of amorphous hafnia across the glass transition
Z. Zeng, X. Liang, Z. Fan, Y. Chen, M. Simoncelli, B. Cheng, ACS Materials Letters (2025) 2695–2701.

[Published Version] View | Files available | DOI | WoS

2025 | Published | Journal Article | IST-REx-ID: 19495 |

Latent Ewald summation for machine learning of long-range interactions
B. Cheng, Npj Computational Materials 11 (2025).

[Published Version] View | Files available | DOI | WoS | arXiv

2025 | Published | Journal Article | IST-REx-ID: 20702 |

Cartesian equivariant representations for learning and understanding molecular orbitals
D.S. King, D. Grzenda, R. Zhu, N. Hudson, I. Foster, B. Cheng, L. Gagliardi, Proceedings of the National Academy of Sciences 122 (2025).

[Published Version] View | Files available | DOI | PubMed | Europe PMC

2025 | Published | Journal Article | IST-REx-ID: 20704

Scalable multitemperature free energy sampling of classical Ising spin states
P. Tuo, Z. Zeng, J. Chen, B. Cheng, Journal of Chemical Theory and Computation 21 (2025) 11427–11435.

Microglia determine an immune-challenged environment and facilitate ibuprofen action in human retinal organoids
V. Schmied, M. Korkut, A. Venturino, J.P. Maya-Arteaga, S. Siegert, Journal of Neuroinflammation 22 (2025).

2025 | Published | Thesis | PhD | IST-REx-ID: 20074 |

Human microglia impact neuronal development in retinal organoids
V. Schmied, Human Microglia Impact Neuronal Development in Retinal Organoids, Institute of Science and Technology Austria, 2025.

[Published Version] View | Files available | DOI

2025 | Published | Journal Article | IST-REx-ID: 19372 |

Asymptotic series for low-energy excitations of the Fröhlich polaron at strong coupling
M. Brooks, D.J. Mitrouskas, Probability and Mathematical Physics 6 (2025) 281–325.

[Preprint] View | DOI | Download Preprint (ext.) | arXiv

Safety and liveness of quantitative properties and automata
U. Boker, T.A. Henzinger, N.A. Mazzocchi, N.E. Sarac, Logical Methods in Computer Science 21 (2025).

[Published Version] View | Files available | DOI | WoS | arXiv

2025 | Published | Journal Article | IST-REx-ID: 19701 |

Information processing in biochemical networks
G. Tkačik, P.R.T. Wolde, Annual Review of Biophysics 54 (2025) 249–274.

Hoxb genes determine the timing of cell ingression by regulating cell surface fluctuations during zebrafish gastrulation
Y. Moriyama, T. Mitsui, C.-P.J. Heisenberg, Development 152 (2025).

Solubility of a resultant equation and applications
T.D. Browning, S. Chan, Journal de l’Ecole Polytechnique - Mathematiques 12 (2025) 1677–1691.

[Published Version] View | Files available | DOI | arXiv

Integral points on cubic surfaces: heuristics and numerics
T.D. Browning, F.A. Wilsch, Selecta Mathematica New Series 31 (2025).

[Published Version] View | Files available | DOI | WoS | arXiv

Roadmap for animate matter
Volpe G, Araújo NAM, Guix M, Miodownik M, Martin N, Alvarez L, Simmchen J, Leonardo RD, Pellicciotta N, Martinet Q, Palacci JA, Ng WK, Saxena D, Sapienza R, Nadine S, Mano JF, Mahdavi R, Beck Adiels C, Forth J, Santangelo C, Palagi S, Seok JM, Webster-Wood VA, Wang S, Yao L, Aghakhani A, Barois T, Kellay H, Coulais C, Van Hecke M, Pierce CJ, Wang T, Chong B, Goldman DI, Reina A, Trianni V, Volpe G, Beckett R, Nair SP, Armstrong R. 2025. Roadmap for animate matter. Journal of Physics: Condensed Matter. 37(33), 333501.

[Published Version] View | Files available | DOI | WoS | arXiv

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