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166 Publications

2025 | Published | Conference Paper | IST-REx-ID: 21327 | OA
Inverse problems with experiment-guided AlphaFold
S.A. Maddipatla, N.E. Sellam, M.I. Bojan, S. Vedula, P. Schanda, A. Marx, A.M. Bronstein, in:, Proceedings of the 42nd International Conference on Machine Learning, ML Research Press, 2025, pp. 42366–42393.
[Published Version] View | Files available | arXiv
 
2025 | Published | Journal Article | IST-REx-ID: 17468 | OA | PlanS
Marcus kinetics control singlet and triplet oxygen evolving from superoxide
S. Mondal, H.T.K. Nguyen, R. Hauschild, S.A. Freunberger, Nature 646 (2025) 601–605.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2025 | Published | Journal Article | IST-REx-ID: 17884 | OA
Distinct stabilization of the human T cell leukemia virus type 1 immature Gag lattice
M. Obr, M. Percipalle, D. Chernikova, H. Yang, A. Thader, G. Pinke, D. Porley Esteves, L.M. Mansky, R.A. Dick, F.K. Schur, Nature Structural & Molecular Biology 32 (2025) 268–276.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2025 | Published | Thesis | PhD | IST-REx-ID: 19557
Mapping developmental dynamics of autism spectrum disorder mouse models at single-cell resolution
L.A. Schwarz, Mapping Developmental Dynamics of Autism Spectrum Disorder Mouse Models at Single-Cell Resolution, Institute of Science and Technology Austria, 2025.
[Published Version] View | Files available | DOI
 
2025 | Published | Thesis | PhD | IST-REx-ID: 20694 | OA
Using genealogies to study the genomic basis of species divergence
A. Pal, Using Genealogies to Study the Genomic Basis of Species Divergence, Institute of Science and Technology Austria, 2025.
[Published Version] View | Files available | DOI
 
2025 | Published | Journal Article | IST-REx-ID: 20190 | OA | PlanS
Genealogical analysis of replicate flower colour hybrid zones in Antirrhinum
A. Pal, D. Shipilina, A. Le Moan, A.J. Mcnairn, J.K. Grenier, M. Kucka, G. Coop, Y.F. Chan, N.H. Barton, D. Field, S. Stankowski, Molecular Ecology 34 (2025).
[Published Version] View | Files available | DOI | WoS
 
2025 | Published | Thesis | PhD | IST-REx-ID: 19533 | OA
Quantum remote sensing and non-equilibrium phase transitions in the microwave regime
R. Sett, Quantum Remote Sensing and Non-Equilibrium Phase Transitions in the Microwave Regime, Institute of Science and Technology Austria, 2025.
[Published Version] View | Files available | DOI
 
2025 | Published | Thesis | PhD | IST-REx-ID: 19386 | OA
Evolution of sex chromosomes, sex determination and asexuality in Artemia brine shrimp
M.N. Elkrewi, Evolution of Sex Chromosomes, Sex Determination and Asexuality in Artemia Brine Shrimp, Institute of Science and Technology Austria, 2025.
[Published Version] View | Files available | DOI
 
2025 | Published | Thesis | PhD | IST-REx-ID: 19431 | OA
Regulation of Cytoplasmic RNA Polymerase II
A. Hlavata, Regulation of Cytoplasmic RNA Polymerase II, Institute of Science and Technology Austria, 2025.
[Published Version] View | Files available | DOI
 
2024 | Published | Journal Article | IST-REx-ID: 14257 | OA
Imaging brain tissue architecture across millimeter to nanometer scales
J.M. Michalska, J. Lyudchik, P. Velicky, H. Korinkova, J. Watson, A. Cenameri, C.M. Sommer, N. Amberg, A. Venturino, K. Roessler, T. Czech, R. Höftberger, S. Siegert, G. Novarino, P.M. Jonas, J.G. Danzl, Nature Biotechnology 42 (2024) 1051–1064.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2024 | Published | Thesis | PhD | IST-REx-ID: 17850 | OA
Fitness landscapes of orthologous green fluorescent proteins
L. Gonzalez Somermeyer, Fitness Landscapes of Orthologous Green Fluorescent Proteins, Institute of Science and Technology Austria, 2024.
[Published Version] View | Files available | DOI
 
2024 | Published | Conference Paper | IST-REx-ID: 18121 | OA
SPADE: Sparsity-guided debugging for deep neural networks
A.S. Moakhar, E.B. Iofinova, E. Frantar, D.-A. Alistarh, in:, Proceedings of the 41st International Conference on Machine Learning, ML Research Press, 2024, pp. 45955–45987.
[Preprint] View | Files available | Download Preprint (ext.) | arXiv
 
2024 | Published | Thesis | PhD | IST-REx-ID: 18515 | OA
Effect of population structure on neutral genetic variation and barriers to gene exchange
P. Surendranadh, Effect of Population Structure on Neutral Genetic Variation and Barriers to Gene Exchange, Institute of Science and Technology Austria, 2024.
[Published Version] View | Files available | DOI
 
2024 | Research Data | IST-REx-ID: 18579 | OA
A thalamic hub-and-spoke network enables visual perception during action by coordinating visuomotor dynamics
T.A. Vega Zuniga, A.L. Sumser, O. Symonova, P. Koppensteiner, F. Schmidt, M.A. Jösch, (2024).
[Published Version] View | Files available | DOI
 
2024 | Draft | Preprint | IST-REx-ID: 18677 | OA
Light-microscopy based dense connectomic reconstruction of mammalian brain tissue
M. Tavakoli, J. Lyudchik, M. Januszewski, V. Vistunou, N. Agudelo Duenas, J. Vorlaufer, C.M. Sommer, C. Kreuzinger, B. Oliveira, A. Cenameri, G. Novarino, V. Jain, J.G. Danzl, BioRxiv (n.d.).
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
2024 | Draft | Preprint | IST-REx-ID: 18688 | OA
Human hippocampal CA3 uses specific functional connectivity rules for efficient associative memory
J.F. Watson, V. Vargas-Barroso, R.J. Morse-Mora, A. Navas-Olive, M. Tavakoli, J.G. Danzl, M. Tomschik, K. Rössler, P.M. Jonas, BioRxiv (n.d.).
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
2024 | Published | Journal Article | IST-REx-ID: 18761 | OA
Evidence for a novel X chromosome in termites
R. Fraser, R. Moraa, A. Djolai, N. Meisenheimer, S. Laube, B. Vicoso, A.K. Huylmans, Genome Biology and Evolution 16 (2024).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2024 | Published | Thesis | PhD | IST-REx-ID: 18766 | OA
Elucidating the structural determinants of the poxvirus core using multi-modal cryo-EM
J. Datler, Elucidating the Structural Determinants of the Poxvirus Core Using Multi-Modal Cryo-EM, Institute of Science and Technology Austria, 2024.
[Published Version] View | Files available | DOI
 
2024 | Published | Conference Paper | IST-REx-ID: 18891 | OA
Neural collapse versus low-rank bias: Is deep neural collapse really optimal?
P. Súkeník, C. Lampert, M. Mondelli, in:, 38th Annual Conference on Neural Information Processing Systems, Neural Information Processing Systems Foundation, 2024.
[Published Version] View | Files available | arXiv
 
2024 | Published | Preprint | IST-REx-ID: 19063 | OA
Can LLMs separate instructions from data? And what do we even mean by that?
E. Zverev, S. Abdelnabi, S. Tabesh, M. Fritz, C. Lampert, ArXiv (2024).
[Preprint] View | Files available | DOI | Download Preprint (ext.) | arXiv
 

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