Florian Pauler

Hippenmeyer Group

24 Publications

Mark all

[24]
2025 | Published | Book Chapter | IST-REx-ID: 18765
G. T. Cheung, F. Pauler, and S. Hippenmeyer, “Probing Cell-Type Specificity of Mutant Phenotype at Transcriptomic Level Using Mosaic Analysis with Double Markers (MADM),” in Lineage Tracing, vol. 2886, J. Garcia-Marques and T. Lee, Eds. New York, NY: Springer Nature, 2025, pp. 139–151.
View | DOI | PubMed | Europe PMC
 
[23]
2025 | Published | Journal Article | IST-REx-ID: 20079
I. Yotova et al., “LINC01638 promotes epithelial-to-mesenchymal transition in endometriosis epithelial cells by up-regulating RHOB via HDAC1 suppression,” Reproductive Biomedicine Online, vol. 51, no. 3. Elsevier, 2025.
View | DOI | PubMed | Europe PMC
 
[22]
2024 | Published | Journal Article | IST-REx-ID: 12875 | OA
G. T. Cheung et al., “Multipotent progenitors instruct ontogeny of the superior colliculus,” Neuron, vol. 112, no. 2. Elsevier, p. 230–246.e11, 2024.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[21]
2024 | Published | Journal Article | IST-REx-ID: 17232 | OA
G. T. Cheung, F. Pauler, P. Koppensteiner, and S. Hippenmeyer, “Protocol for mapping cell lineage and cell-type identity of clonally-related cells in situ using MADM-CloneSeq,” STAR Protocols, vol. 5, no. 3. Elsevier, 2024.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[20]
2023 | Published | Journal Article | IST-REx-ID: 12802 | OA
L. Knaus et al., “Large neutral amino acid levels tune perinatal neuronal excitability and survival,” Cell, vol. 186, no. 9. Elsevier, p. 1950–1967.e25, 2023.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[19]
2022 | Published | Journal Article | IST-REx-ID: 11449 | OA
D. J. Anderson, F. Pauler, A. Mckenna, J. Shendure, S. Hippenmeyer, and M. S. Horwitz, “Simultaneous brain cell type and lineage determined by scRNA-seq reveals stereotyped cortical development,” Cell Systems, vol. 13, no. 6. Elsevier, p. 438–453.e5, 2022.
[Published Version] View | DOI | Download Published Version (ext.) | WoS | PubMed | Europe PMC
 
[18]
2022 | Published | Journal Article | IST-REx-ID: 11336 | OA
N. Amberg, F. Pauler, C. Streicher, and S. Hippenmeyer, “Tissue-wide genetic and cellular landscape shapes the execution of sequential PRC2 functions in neural stem cell lineage progression,” Science Advances, vol. 8, no. 44. American Association for the Advancement of Science, 2022.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[17]
2022 | Published | Journal Article | IST-REx-ID: 10791 | OA
A. H. Hansen et al., “Tissue-wide effects override cell-intrinsic gene function in radial neuron migration,” Oxford Open Neuroscience, vol. 1, no. 1. Oxford University Press, 2022.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[16]
2021 | Published | Journal Article | IST-REx-ID: 9601 | OA
L. Santini et al., “Genomic imprinting in mouse blastocysts is predominantly associated with H3K27me3,” Nature Communications, vol. 12, no. 1. Springer Nature, 2021.
[Published Version] View | Files available | DOI | WoS
 
[15]
2021 | Submitted | Preprint | IST-REx-ID: 9082 | OA
D. J. Anderson, F. Pauler, A. McKenna, J. Shendure, S. Hippenmeyer, and M. S. Horwitz, “Simultaneous identification of brain cell type and lineage via single cell RNA sequencing,” bioRxiv. Cold Spring Harbor Laboratory.
[Preprint] View | DOI | Download Preprint (ext.)
 
[14]
2021 | Published | Journal Article | IST-REx-ID: 9188 | OA
F. Pauler, Q. Hudson, S. Laukoter, and S. Hippenmeyer, “Inducible uniparental chromosome disomy to probe genomic imprinting at single-cell level in brain and beyond,” Neurochemistry International, vol. 145, no. 5. Elsevier, 2021.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[13]
2021 | Published | Journal Article | IST-REx-ID: 9906 | OA
I. Yotova et al., “LINC01133 inhibits invasion and promotes proliferation in an endometriosis epithelial cell line,” International Journal of Molecular Sciences, vol. 22, no. 16. MDPI, 2021.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[12]
2020 | Submitted | Preprint | IST-REx-ID: 8813 | OA
L. Santini et al., “Novel imprints in mouse blastocysts are predominantly DNA methylation independent,” bioRxiv. Cold Spring Harbor Laboratory.
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC
 
[11]
2020 | Published | Journal Article | IST-REx-ID: 7814 | OA
R. J. Beattie, S. Hippenmeyer, and F. Pauler, “SCOPES: Sparking curiosity through Open-Source platforms in education and science,” Frontiers in Education, vol. 5. Frontiers Media, 2020.
[Published Version] View | Files available | DOI
 
[10]
2020 | Published | Journal Article | IST-REx-ID: 8978 | OA
S. Laukoter, N. Amberg, F. Pauler, and S. Hippenmeyer, “Generation and isolation of single cells from mouse brain with mosaic analysis with double markers-induced uniparental chromosome disomy,” STAR Protocols, vol. 1, no. 3. Elsevier, 2020.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[9]
2020 | Published | Journal Article | IST-REx-ID: 7253 | OA
S. Laukoter, R. J. Beattie, F. Pauler, N. Amberg, K. I. Nakayama, and S. Hippenmeyer, “Imprinted Cdkn1c genomic locus cell-autonomously promotes cell survival in cerebral cortex development,” Nature Communications, vol. 11. Springer Nature, 2020.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[8]
2020 | Published | Journal Article | IST-REx-ID: 8162 | OA
S. Laukoter et al., “Cell-type specificity of genomic imprinting in cerebral cortex,” Neuron, vol. 107, no. 6. Elsevier, p. 1160–1179.e9, 2020.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[7]
2019 | Published | Journal Article | IST-REx-ID: 7399 | OA
D. Andergassen et al., “The Airn lncRNA does not require any DNA elements within its locus to silence distant imprinted genes,” PLoS Genetics, vol. 15, no. 7. Public Library of Science, 2019.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[6]
2018 | Published | Journal Article | IST-REx-ID: 20 | OA
J. Higareda Almaraz et al., “Norepinephrine triggers an immediate-early regulatory network response in primary human white adipocytes,” BMC Genomics, vol. 19, no. 1. BioMed Central, 2018.
[Published Version] View | Files available | DOI | WoS
 
[5]
2018 | Research Data Reference | IST-REx-ID: 9807 | OA
J. Higareda Almaraz et al., “Additional file 1: Of Norepinephrine triggers an immediate-early regulatory network response in primary human white adipocytes.” Springer Nature, 2018.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[4]
2018 | Research Data Reference | IST-REx-ID: 9808 | OA
J. Higareda Almaraz et al., “Additional file 3: Of Norepinephrine triggers an immediate-early regulatory network response in primary human white adipocytes.” Springer Nature, 2018.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[3]
2017 | Published | Journal Article | IST-REx-ID: 944
R. J. Beattie et al., “Mosaic analysis with double markers reveals distinct sequential functions of Lgl1 in neural stem cells,” Neuron, vol. 94, no. 3. Cell Press, p. 517–533.e3, 2017.
View | DOI | WoS
 
[2]
2017 | Published | Journal Article | IST-REx-ID: 713 | OA
D. Andergassen et al., “Mapping the mouse Allelome reveals tissue specific regulation of allelic expression,” eLife, vol. 6. eLife Sciences Publications, 2017.
[Published Version] View | Files available | DOI
 
[1]
2016 | Published | Journal Article | IST-REx-ID: 1240 | OA
A. Kornienko et al., “Long non-coding RNAs display higher natural expression variation than protein-coding genes in healthy humans,” Genome Biology, vol. 17, no. 1. BioMed Central, 2016.
[Published Version] View | Files available | DOI
 
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24 Publications

Mark all

[24]
2025 | Published | Book Chapter | IST-REx-ID: 18765
G. T. Cheung, F. Pauler, and S. Hippenmeyer, “Probing Cell-Type Specificity of Mutant Phenotype at Transcriptomic Level Using Mosaic Analysis with Double Markers (MADM),” in Lineage Tracing, vol. 2886, J. Garcia-Marques and T. Lee, Eds. New York, NY: Springer Nature, 2025, pp. 139–151.
View | DOI | PubMed | Europe PMC
 
[23]
2025 | Published | Journal Article | IST-REx-ID: 20079
I. Yotova et al., “LINC01638 promotes epithelial-to-mesenchymal transition in endometriosis epithelial cells by up-regulating RHOB via HDAC1 suppression,” Reproductive Biomedicine Online, vol. 51, no. 3. Elsevier, 2025.
View | DOI | PubMed | Europe PMC
 
[22]
2024 | Published | Journal Article | IST-REx-ID: 12875 | OA
G. T. Cheung et al., “Multipotent progenitors instruct ontogeny of the superior colliculus,” Neuron, vol. 112, no. 2. Elsevier, p. 230–246.e11, 2024.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[21]
2024 | Published | Journal Article | IST-REx-ID: 17232 | OA
G. T. Cheung, F. Pauler, P. Koppensteiner, and S. Hippenmeyer, “Protocol for mapping cell lineage and cell-type identity of clonally-related cells in situ using MADM-CloneSeq,” STAR Protocols, vol. 5, no. 3. Elsevier, 2024.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[20]
2023 | Published | Journal Article | IST-REx-ID: 12802 | OA
L. Knaus et al., “Large neutral amino acid levels tune perinatal neuronal excitability and survival,” Cell, vol. 186, no. 9. Elsevier, p. 1950–1967.e25, 2023.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[19]
2022 | Published | Journal Article | IST-REx-ID: 11449 | OA
D. J. Anderson, F. Pauler, A. Mckenna, J. Shendure, S. Hippenmeyer, and M. S. Horwitz, “Simultaneous brain cell type and lineage determined by scRNA-seq reveals stereotyped cortical development,” Cell Systems, vol. 13, no. 6. Elsevier, p. 438–453.e5, 2022.
[Published Version] View | DOI | Download Published Version (ext.) | WoS | PubMed | Europe PMC
 
[18]
2022 | Published | Journal Article | IST-REx-ID: 11336 | OA
N. Amberg, F. Pauler, C. Streicher, and S. Hippenmeyer, “Tissue-wide genetic and cellular landscape shapes the execution of sequential PRC2 functions in neural stem cell lineage progression,” Science Advances, vol. 8, no. 44. American Association for the Advancement of Science, 2022.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[17]
2022 | Published | Journal Article | IST-REx-ID: 10791 | OA
A. H. Hansen et al., “Tissue-wide effects override cell-intrinsic gene function in radial neuron migration,” Oxford Open Neuroscience, vol. 1, no. 1. Oxford University Press, 2022.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[16]
2021 | Published | Journal Article | IST-REx-ID: 9601 | OA
L. Santini et al., “Genomic imprinting in mouse blastocysts is predominantly associated with H3K27me3,” Nature Communications, vol. 12, no. 1. Springer Nature, 2021.
[Published Version] View | Files available | DOI | WoS
 
[15]
2021 | Submitted | Preprint | IST-REx-ID: 9082 | OA
D. J. Anderson, F. Pauler, A. McKenna, J. Shendure, S. Hippenmeyer, and M. S. Horwitz, “Simultaneous identification of brain cell type and lineage via single cell RNA sequencing,” bioRxiv. Cold Spring Harbor Laboratory.
[Preprint] View | DOI | Download Preprint (ext.)
 
[14]
2021 | Published | Journal Article | IST-REx-ID: 9188 | OA
F. Pauler, Q. Hudson, S. Laukoter, and S. Hippenmeyer, “Inducible uniparental chromosome disomy to probe genomic imprinting at single-cell level in brain and beyond,” Neurochemistry International, vol. 145, no. 5. Elsevier, 2021.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[13]
2021 | Published | Journal Article | IST-REx-ID: 9906 | OA
I. Yotova et al., “LINC01133 inhibits invasion and promotes proliferation in an endometriosis epithelial cell line,” International Journal of Molecular Sciences, vol. 22, no. 16. MDPI, 2021.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[12]
2020 | Submitted | Preprint | IST-REx-ID: 8813 | OA
L. Santini et al., “Novel imprints in mouse blastocysts are predominantly DNA methylation independent,” bioRxiv. Cold Spring Harbor Laboratory.
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC
 
[11]
2020 | Published | Journal Article | IST-REx-ID: 7814 | OA
R. J. Beattie, S. Hippenmeyer, and F. Pauler, “SCOPES: Sparking curiosity through Open-Source platforms in education and science,” Frontiers in Education, vol. 5. Frontiers Media, 2020.
[Published Version] View | Files available | DOI
 
[10]
2020 | Published | Journal Article | IST-REx-ID: 8978 | OA
S. Laukoter, N. Amberg, F. Pauler, and S. Hippenmeyer, “Generation and isolation of single cells from mouse brain with mosaic analysis with double markers-induced uniparental chromosome disomy,” STAR Protocols, vol. 1, no. 3. Elsevier, 2020.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[9]
2020 | Published | Journal Article | IST-REx-ID: 7253 | OA
S. Laukoter, R. J. Beattie, F. Pauler, N. Amberg, K. I. Nakayama, and S. Hippenmeyer, “Imprinted Cdkn1c genomic locus cell-autonomously promotes cell survival in cerebral cortex development,” Nature Communications, vol. 11. Springer Nature, 2020.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[8]
2020 | Published | Journal Article | IST-REx-ID: 8162 | OA
S. Laukoter et al., “Cell-type specificity of genomic imprinting in cerebral cortex,” Neuron, vol. 107, no. 6. Elsevier, p. 1160–1179.e9, 2020.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[7]
2019 | Published | Journal Article | IST-REx-ID: 7399 | OA
D. Andergassen et al., “The Airn lncRNA does not require any DNA elements within its locus to silence distant imprinted genes,” PLoS Genetics, vol. 15, no. 7. Public Library of Science, 2019.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[6]
2018 | Published | Journal Article | IST-REx-ID: 20 | OA
J. Higareda Almaraz et al., “Norepinephrine triggers an immediate-early regulatory network response in primary human white adipocytes,” BMC Genomics, vol. 19, no. 1. BioMed Central, 2018.
[Published Version] View | Files available | DOI | WoS
 
[5]
2018 | Research Data Reference | IST-REx-ID: 9807 | OA
J. Higareda Almaraz et al., “Additional file 1: Of Norepinephrine triggers an immediate-early regulatory network response in primary human white adipocytes.” Springer Nature, 2018.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[4]
2018 | Research Data Reference | IST-REx-ID: 9808 | OA
J. Higareda Almaraz et al., “Additional file 3: Of Norepinephrine triggers an immediate-early regulatory network response in primary human white adipocytes.” Springer Nature, 2018.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[3]
2017 | Published | Journal Article | IST-REx-ID: 944
R. J. Beattie et al., “Mosaic analysis with double markers reveals distinct sequential functions of Lgl1 in neural stem cells,” Neuron, vol. 94, no. 3. Cell Press, p. 517–533.e3, 2017.
View | DOI | WoS
 
[2]
2017 | Published | Journal Article | IST-REx-ID: 713 | OA
D. Andergassen et al., “Mapping the mouse Allelome reveals tissue specific regulation of allelic expression,” eLife, vol. 6. eLife Sciences Publications, 2017.
[Published Version] View | Files available | DOI
 
[1]
2016 | Published | Journal Article | IST-REx-ID: 1240 | OA
A. Kornienko et al., “Long non-coding RNAs display higher natural expression variation than protein-coding genes in healthy humans,” Genome Biology, vol. 17, no. 1. BioMed Central, 2016.
[Published Version] View | Files available | DOI
 
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Citation Style: IEEE

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