Florian Pauler

Hippenmeyer Group

24 Publications

Mark all

[24]
2025 | Published | Book Chapter | IST-REx-ID: 18765
Probing Cell-Type Specificity of Mutant Phenotype at Transcriptomic Level Using Mosaic Analysis with Double Markers (MADM)
G.T. Cheung, F. Pauler, S. Hippenmeyer, in:, J. Garcia-Marques, T. Lee (Eds.), Lineage Tracing, Springer Nature, New York, NY, 2025, pp. 139–151.
View | DOI | PubMed | Europe PMC
 
[23]
2025 | Published | Journal Article | IST-REx-ID: 20079
LINC01638 promotes epithelial-to-mesenchymal transition in endometriosis epithelial cells by up-regulating RHOB via HDAC1 suppression
I. Yotova, K. Proestling, F. Pauler, L. Rainer, L. Kaup, J. Heine, L. Sandrieser, R. Wenzl, Q.J. Hudson, Reproductive Biomedicine Online 51 (2025).
View | DOI | PubMed | Europe PMC
 
[22]
2024 | Published | Journal Article | IST-REx-ID: 12875 | OA
Multipotent progenitors instruct ontogeny of the superior colliculus
G.T. Cheung, F. Pauler, P. Koppensteiner, T. Krausgruber, C. Streicher, M. Schrammel, N.Y. Özgen, A. Ivec, C. Bock, R. Shigemoto, S. Hippenmeyer, Neuron 112 (2024) 230–246.e11.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[21]
2024 | Published | Journal Article | IST-REx-ID: 17232 | OA
Protocol for mapping cell lineage and cell-type identity of clonally-related cells in situ using MADM-CloneSeq
G.T. Cheung, F. Pauler, P. Koppensteiner, S. Hippenmeyer, STAR Protocols 5 (2024).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[20]
2023 | Published | Journal Article | IST-REx-ID: 12802 | OA
Large neutral amino acid levels tune perinatal neuronal excitability and survival
L. Knaus, B. Basilico, D. Malzl, M. Gerykova Bujalkova, M. Smogavec, L.A. Schwarz, S. Gorkiewicz, N. Amberg, F. Pauler, C. Knittl-Frank, M. Tassinari, N. Maulide, T. Rülicke, J. Menche, S. Hippenmeyer, G. Novarino, Cell 186 (2023) 1950–1967.e25.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[19]
2022 | Published | Journal Article | IST-REx-ID: 11449 | OA
Simultaneous brain cell type and lineage determined by scRNA-seq reveals stereotyped cortical development
D.J. Anderson, F. Pauler, A. Mckenna, J. Shendure, S. Hippenmeyer, M.S. Horwitz, Cell Systems 13 (2022) 438–453.e5.
[Published Version] View | DOI | Download Published Version (ext.) | WoS | PubMed | Europe PMC
 
[18]
2022 | Published | Journal Article | IST-REx-ID: 11336 | OA
Tissue-wide genetic and cellular landscape shapes the execution of sequential PRC2 functions in neural stem cell lineage progression
N. Amberg, F. Pauler, C. Streicher, S. Hippenmeyer, Science Advances 8 (2022).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[17]
2022 | Published | Journal Article | IST-REx-ID: 10791 | OA
Tissue-wide effects override cell-intrinsic gene function in radial neuron migration
A.H. Hansen, F. Pauler, M. Riedl, C. Streicher, A.-M. Heger, S. Laukoter, C.M. Sommer, A. Nicolas, B. Hof, L.H. Tsai, T. Rülicke, S. Hippenmeyer, Oxford Open Neuroscience 1 (2022).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[16]
2021 | Published | Journal Article | IST-REx-ID: 9601 | OA
Genomic imprinting in mouse blastocysts is predominantly associated with H3K27me3
L. Santini, F. Halbritter, F. Titz-Teixeira, T. Suzuki, M. Asami, X. Ma, J. Ramesmayer, A. Lackner, N. Warr, F. Pauler, S. Hippenmeyer, E. Laue, M. Farlik, C. Bock, A. Beyer, A.C.F. Perry, M. Leeb, Nature Communications 12 (2021).
[Published Version] View | Files available | DOI | WoS
 
[15]
2021 | Submitted | Preprint | IST-REx-ID: 9082 | OA
Simultaneous identification of brain cell type and lineage via single cell RNA sequencing
D.J. Anderson, F. Pauler, A. McKenna, J. Shendure, S. Hippenmeyer, M.S. Horwitz, BioRxiv (n.d.).
[Preprint] View | DOI | Download Preprint (ext.)
 
[14]
2021 | Published | Journal Article | IST-REx-ID: 9188 | OA
Inducible uniparental chromosome disomy to probe genomic imprinting at single-cell level in brain and beyond
F. Pauler, Q. Hudson, S. Laukoter, S. Hippenmeyer, Neurochemistry International 145 (2021).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[13]
2021 | Published | Journal Article | IST-REx-ID: 9906 | OA
LINC01133 inhibits invasion and promotes proliferation in an endometriosis epithelial cell line
I. Yotova, Q.J. Hudson, F. Pauler, K. Proestling, I. Haslinger, L. Kuessel, A. Perricos, H. Husslein, R. Wenzl, International Journal of Molecular Sciences 22 (2021).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[12]
2020 | Submitted | Preprint | IST-REx-ID: 8813 | OA
Novel imprints in mouse blastocysts are predominantly DNA methylation independent
L. Santini, F. Halbritter, F. Titz-Teixeira, T. Suzuki, M. Asami, J. Ramesmayer, X. Ma, A. Lackner, N. Warr, F. Pauler, S. Hippenmeyer, E. Laue, M. Farlik, C. Bock, A. Beyer, A.C.F. Perry, M. Leeb, BioRxiv (n.d.).
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC
 
[11]
2020 | Published | Journal Article | IST-REx-ID: 7814 | OA
SCOPES: Sparking curiosity through Open-Source platforms in education and science
R.J. Beattie, S. Hippenmeyer, F. Pauler, Frontiers in Education 5 (2020).
[Published Version] View | Files available | DOI
 
[10]
2020 | Published | Journal Article | IST-REx-ID: 8978 | OA
Generation and isolation of single cells from mouse brain with mosaic analysis with double markers-induced uniparental chromosome disomy
S. Laukoter, N. Amberg, F. Pauler, S. Hippenmeyer, STAR Protocols 1 (2020).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[9]
2020 | Published | Journal Article | IST-REx-ID: 7253 | OA
Imprinted Cdkn1c genomic locus cell-autonomously promotes cell survival in cerebral cortex development
S. Laukoter, R.J. Beattie, F. Pauler, N. Amberg, K.I. Nakayama, S. Hippenmeyer, Nature Communications 11 (2020).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[8]
2020 | Published | Journal Article | IST-REx-ID: 8162 | OA
Cell-type specificity of genomic imprinting in cerebral cortex
S. Laukoter, F. Pauler, R.J. Beattie, N. Amberg, A.H. Hansen, C. Streicher, T. Penz, C. Bock, S. Hippenmeyer, Neuron 107 (2020) 1160–1179.e9.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[7]
2019 | Published | Journal Article | IST-REx-ID: 7399 | OA
The Airn lncRNA does not require any DNA elements within its locus to silence distant imprinted genes
D. Andergassen, M. Muckenhuber, P.C. Bammer, T.M. Kulinski, H.-C. Theussl, T. Shimizu, J.M. Penninger, F. Pauler, Q.J. Hudson, PLoS Genetics 15 (2019).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[6]
2018 | Published | Journal Article | IST-REx-ID: 20 | OA
Norepinephrine triggers an immediate-early regulatory network response in primary human white adipocytes
J. Higareda Almaraz, M. Karbiener, M. Giroud, F. Pauler, T. Gerhalter, S. Herzig, M. Scheideler, BMC Genomics 19 (2018).
[Published Version] View | Files available | DOI | WoS
 
[5]
2018 | Research Data Reference | IST-REx-ID: 9807 | OA
Additional file 1: Of Norepinephrine triggers an immediate-early regulatory network response in primary human white adipocytes
J. Higareda Almaraz, M. Karbiener, M. Giroud, F. Pauler, T. Gerhalter, S. Herzig, M. Scheideler, (2018).
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[4]
2018 | Research Data Reference | IST-REx-ID: 9808 | OA
Additional file 3: Of Norepinephrine triggers an immediate-early regulatory network response in primary human white adipocytes
J. Higareda Almaraz, M. Karbiener, M. Giroud, F. Pauler, T. Gerhalter, S. Herzig, M. Scheideler, (2018).
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[3]
2017 | Published | Journal Article | IST-REx-ID: 944
Mosaic analysis with double markers reveals distinct sequential functions of Lgl1 in neural stem cells
R.J. Beattie, M.P. Postiglione, L. Burnett, S. Laukoter, C. Streicher, F. Pauler, G. Xiao, O. Klezovitch, V. Vasioukhin, T. Ghashghaei, S. Hippenmeyer, Neuron 94 (2017) 517–533.e3.
View | DOI | WoS
 
[2]
2017 | Published | Journal Article | IST-REx-ID: 713 | OA
Mapping the mouse Allelome reveals tissue specific regulation of allelic expression
D. Andergassen, C. Dotter, D. Wenzel, V. Sigl, P. Bammer, M. Muckenhuber, D. Mayer, T. Kulinski, H. Theussl, J. Penninger, C. Bock, D. Barlow, F. Pauler, Q. Hudson, ELife 6 (2017).
[Published Version] View | Files available | DOI
 
[1]
2016 | Published | Journal Article | IST-REx-ID: 1240 | OA
Long non-coding RNAs display higher natural expression variation than protein-coding genes in healthy humans
A. Kornienko, C. Dotter, P. Guenzl, H. Gisslinger, B. Gisslinger, C. Cleary, R. Kralovics, F. Pauler, D. Barlow, Genome Biology 17 (2016).
[Published Version] View | Files available | DOI
 
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24 Publications

Mark all

[24]
2025 | Published | Book Chapter | IST-REx-ID: 18765
Probing Cell-Type Specificity of Mutant Phenotype at Transcriptomic Level Using Mosaic Analysis with Double Markers (MADM)
G.T. Cheung, F. Pauler, S. Hippenmeyer, in:, J. Garcia-Marques, T. Lee (Eds.), Lineage Tracing, Springer Nature, New York, NY, 2025, pp. 139–151.
View | DOI | PubMed | Europe PMC
 
[23]
2025 | Published | Journal Article | IST-REx-ID: 20079
LINC01638 promotes epithelial-to-mesenchymal transition in endometriosis epithelial cells by up-regulating RHOB via HDAC1 suppression
I. Yotova, K. Proestling, F. Pauler, L. Rainer, L. Kaup, J. Heine, L. Sandrieser, R. Wenzl, Q.J. Hudson, Reproductive Biomedicine Online 51 (2025).
View | DOI | PubMed | Europe PMC
 
[22]
2024 | Published | Journal Article | IST-REx-ID: 12875 | OA
Multipotent progenitors instruct ontogeny of the superior colliculus
G.T. Cheung, F. Pauler, P. Koppensteiner, T. Krausgruber, C. Streicher, M. Schrammel, N.Y. Özgen, A. Ivec, C. Bock, R. Shigemoto, S. Hippenmeyer, Neuron 112 (2024) 230–246.e11.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[21]
2024 | Published | Journal Article | IST-REx-ID: 17232 | OA
Protocol for mapping cell lineage and cell-type identity of clonally-related cells in situ using MADM-CloneSeq
G.T. Cheung, F. Pauler, P. Koppensteiner, S. Hippenmeyer, STAR Protocols 5 (2024).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[20]
2023 | Published | Journal Article | IST-REx-ID: 12802 | OA
Large neutral amino acid levels tune perinatal neuronal excitability and survival
L. Knaus, B. Basilico, D. Malzl, M. Gerykova Bujalkova, M. Smogavec, L.A. Schwarz, S. Gorkiewicz, N. Amberg, F. Pauler, C. Knittl-Frank, M. Tassinari, N. Maulide, T. Rülicke, J. Menche, S. Hippenmeyer, G. Novarino, Cell 186 (2023) 1950–1967.e25.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[19]
2022 | Published | Journal Article | IST-REx-ID: 11449 | OA
Simultaneous brain cell type and lineage determined by scRNA-seq reveals stereotyped cortical development
D.J. Anderson, F. Pauler, A. Mckenna, J. Shendure, S. Hippenmeyer, M.S. Horwitz, Cell Systems 13 (2022) 438–453.e5.
[Published Version] View | DOI | Download Published Version (ext.) | WoS | PubMed | Europe PMC
 
[18]
2022 | Published | Journal Article | IST-REx-ID: 11336 | OA
Tissue-wide genetic and cellular landscape shapes the execution of sequential PRC2 functions in neural stem cell lineage progression
N. Amberg, F. Pauler, C. Streicher, S. Hippenmeyer, Science Advances 8 (2022).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[17]
2022 | Published | Journal Article | IST-REx-ID: 10791 | OA
Tissue-wide effects override cell-intrinsic gene function in radial neuron migration
A.H. Hansen, F. Pauler, M. Riedl, C. Streicher, A.-M. Heger, S. Laukoter, C.M. Sommer, A. Nicolas, B. Hof, L.H. Tsai, T. Rülicke, S. Hippenmeyer, Oxford Open Neuroscience 1 (2022).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[16]
2021 | Published | Journal Article | IST-REx-ID: 9601 | OA
Genomic imprinting in mouse blastocysts is predominantly associated with H3K27me3
L. Santini, F. Halbritter, F. Titz-Teixeira, T. Suzuki, M. Asami, X. Ma, J. Ramesmayer, A. Lackner, N. Warr, F. Pauler, S. Hippenmeyer, E. Laue, M. Farlik, C. Bock, A. Beyer, A.C.F. Perry, M. Leeb, Nature Communications 12 (2021).
[Published Version] View | Files available | DOI | WoS
 
[15]
2021 | Submitted | Preprint | IST-REx-ID: 9082 | OA
Simultaneous identification of brain cell type and lineage via single cell RNA sequencing
D.J. Anderson, F. Pauler, A. McKenna, J. Shendure, S. Hippenmeyer, M.S. Horwitz, BioRxiv (n.d.).
[Preprint] View | DOI | Download Preprint (ext.)
 
[14]
2021 | Published | Journal Article | IST-REx-ID: 9188 | OA
Inducible uniparental chromosome disomy to probe genomic imprinting at single-cell level in brain and beyond
F. Pauler, Q. Hudson, S. Laukoter, S. Hippenmeyer, Neurochemistry International 145 (2021).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[13]
2021 | Published | Journal Article | IST-REx-ID: 9906 | OA
LINC01133 inhibits invasion and promotes proliferation in an endometriosis epithelial cell line
I. Yotova, Q.J. Hudson, F. Pauler, K. Proestling, I. Haslinger, L. Kuessel, A. Perricos, H. Husslein, R. Wenzl, International Journal of Molecular Sciences 22 (2021).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[12]
2020 | Submitted | Preprint | IST-REx-ID: 8813 | OA
Novel imprints in mouse blastocysts are predominantly DNA methylation independent
L. Santini, F. Halbritter, F. Titz-Teixeira, T. Suzuki, M. Asami, J. Ramesmayer, X. Ma, A. Lackner, N. Warr, F. Pauler, S. Hippenmeyer, E. Laue, M. Farlik, C. Bock, A. Beyer, A.C.F. Perry, M. Leeb, BioRxiv (n.d.).
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC
 
[11]
2020 | Published | Journal Article | IST-REx-ID: 7814 | OA
SCOPES: Sparking curiosity through Open-Source platforms in education and science
R.J. Beattie, S. Hippenmeyer, F. Pauler, Frontiers in Education 5 (2020).
[Published Version] View | Files available | DOI
 
[10]
2020 | Published | Journal Article | IST-REx-ID: 8978 | OA
Generation and isolation of single cells from mouse brain with mosaic analysis with double markers-induced uniparental chromosome disomy
S. Laukoter, N. Amberg, F. Pauler, S. Hippenmeyer, STAR Protocols 1 (2020).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[9]
2020 | Published | Journal Article | IST-REx-ID: 7253 | OA
Imprinted Cdkn1c genomic locus cell-autonomously promotes cell survival in cerebral cortex development
S. Laukoter, R.J. Beattie, F. Pauler, N. Amberg, K.I. Nakayama, S. Hippenmeyer, Nature Communications 11 (2020).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[8]
2020 | Published | Journal Article | IST-REx-ID: 8162 | OA
Cell-type specificity of genomic imprinting in cerebral cortex
S. Laukoter, F. Pauler, R.J. Beattie, N. Amberg, A.H. Hansen, C. Streicher, T. Penz, C. Bock, S. Hippenmeyer, Neuron 107 (2020) 1160–1179.e9.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[7]
2019 | Published | Journal Article | IST-REx-ID: 7399 | OA
The Airn lncRNA does not require any DNA elements within its locus to silence distant imprinted genes
D. Andergassen, M. Muckenhuber, P.C. Bammer, T.M. Kulinski, H.-C. Theussl, T. Shimizu, J.M. Penninger, F. Pauler, Q.J. Hudson, PLoS Genetics 15 (2019).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[6]
2018 | Published | Journal Article | IST-REx-ID: 20 | OA
Norepinephrine triggers an immediate-early regulatory network response in primary human white adipocytes
J. Higareda Almaraz, M. Karbiener, M. Giroud, F. Pauler, T. Gerhalter, S. Herzig, M. Scheideler, BMC Genomics 19 (2018).
[Published Version] View | Files available | DOI | WoS
 
[5]
2018 | Research Data Reference | IST-REx-ID: 9807 | OA
Additional file 1: Of Norepinephrine triggers an immediate-early regulatory network response in primary human white adipocytes
J. Higareda Almaraz, M. Karbiener, M. Giroud, F. Pauler, T. Gerhalter, S. Herzig, M. Scheideler, (2018).
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[4]
2018 | Research Data Reference | IST-REx-ID: 9808 | OA
Additional file 3: Of Norepinephrine triggers an immediate-early regulatory network response in primary human white adipocytes
J. Higareda Almaraz, M. Karbiener, M. Giroud, F. Pauler, T. Gerhalter, S. Herzig, M. Scheideler, (2018).
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[3]
2017 | Published | Journal Article | IST-REx-ID: 944
Mosaic analysis with double markers reveals distinct sequential functions of Lgl1 in neural stem cells
R.J. Beattie, M.P. Postiglione, L. Burnett, S. Laukoter, C. Streicher, F. Pauler, G. Xiao, O. Klezovitch, V. Vasioukhin, T. Ghashghaei, S. Hippenmeyer, Neuron 94 (2017) 517–533.e3.
View | DOI | WoS
 
[2]
2017 | Published | Journal Article | IST-REx-ID: 713 | OA
Mapping the mouse Allelome reveals tissue specific regulation of allelic expression
D. Andergassen, C. Dotter, D. Wenzel, V. Sigl, P. Bammer, M. Muckenhuber, D. Mayer, T. Kulinski, H. Theussl, J. Penninger, C. Bock, D. Barlow, F. Pauler, Q. Hudson, ELife 6 (2017).
[Published Version] View | Files available | DOI
 
[1]
2016 | Published | Journal Article | IST-REx-ID: 1240 | OA
Long non-coding RNAs display higher natural expression variation than protein-coding genes in healthy humans
A. Kornienko, C. Dotter, P. Guenzl, H. Gisslinger, B. Gisslinger, C. Cleary, R. Kralovics, F. Pauler, D. Barlow, Genome Biology 17 (2016).
[Published Version] View | Files available | DOI
 
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