Olga Bochkareva

Kondrashov Group

22 Publications

Mark all

[22]
2023 | Published | Journal Article | IST-REx-ID: 14716 | OA
Yurtseven, A., Buyanova, S., Agrawal, A. A. A., Bochkareva, O., & Kalinina, O. V. V. (2023). Machine learning and phylogenetic analysis allow for predicting antibiotic resistance in M. tuberculosis. BMC Microbiology. Springer Nature. https://doi.org/10.1186/s12866-023-03147-7
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[21]
2022 | Published | Journal Article | IST-REx-ID: 10927 | OA
Zabelkin, A., Yakovleva, Y., Bochkareva, O., & Alexeev, N. (2022). PaReBrick: PArallel REarrangements and BReaks identification toolkit. Bioinformatics. Oxford Academic. https://doi.org/10.1093/bioinformatics/btab691
[Published Version] View | Files available | DOI | WoS
 
[20]
2022 | Published | Journal Article | IST-REx-ID: 11344 | OA
Dranenko, N., Tutukina, M., Gelfand, M., Kondrashov, F., & Bochkareva, O. (2022). Chromosome-encoded IpaH ubiquitin ligases indicate non-human enteroinvasive Escherichia. Scientific Reports. Springer Nature. https://doi.org/10.1038/s41598-022-10827-3
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[19]
2021 | Published | Journal Article | IST-REx-ID: 9380 | OA
Seferbekova, Z., Zabelkin, A., Yakovleva, Y., Afasizhev, R., Dranenko, N. O., Alexeev, N., … Bochkareva, O. (2021). High rates of genome rearrangements and pathogenicity of Shigella spp. Frontiers in Microbiology. Frontiers. https://doi.org/10.3389/fmicb.2021.628622
[Published Version] View | Files available | DOI | WoS
 
[18]
2020 | Published | Conference Paper | IST-REx-ID: 15071 | OA
Oshurkova, V., Troshina, O., Trubitsyn, V., Ryzhmanova, Y., Bochkareva, O., & Shcherbakova, V. (2020). Characterization of methanosarcina mazei JL01 isolated from holocene arctic permafrost and study of the archaeon cooperation with bacterium Sphaerochaeta associata GLS2T. In Proceedings of 1st International Electronic Conference on Microbiology. Virtual: MDPI. https://doi.org/10.3390/ecm2020-07116
[Published Version] View | Files available | DOI
 
[17]
2019 | Research Data Reference | IST-REx-ID: 9731 | OA
Sigalova, O., Chaplin, A., Bochkareva, O., Shelyakin, P., Filaretov, V., Akkuratov, E., … Gelfand, M. S. (2019). Additional file 11 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808772.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[16]
2019 | Research Data Reference | IST-REx-ID: 9783 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 10 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808760.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[15]
2019 | Research Data Reference | IST-REx-ID: 9890 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 15 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808802.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[14]
2019 | Research Data Reference | IST-REx-ID: 9892 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 16 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808814.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[13]
2019 | Research Data Reference | IST-REx-ID: 9893 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 17 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808820.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[12]
2019 | Research Data Reference | IST-REx-ID: 9894 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 18 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808826.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[11]
2019 | Research Data Reference | IST-REx-ID: 9895 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 19 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808835.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[10]
2019 | Research Data Reference | IST-REx-ID: 9896 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 1 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808841.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[9]
2019 | Research Data Reference | IST-REx-ID: 9897 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 20 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808850.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[8]
2019 | Research Data Reference | IST-REx-ID: 9898 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 21 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808859.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[7]
2019 | Research Data Reference | IST-REx-ID: 9899 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 2 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808865.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[6]
2019 | Research Data Reference | IST-REx-ID: 9900 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 5 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808886.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[5]
2019 | Research Data Reference | IST-REx-ID: 9901 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 9 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808907.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[4]
2019 | Published | Journal Article | IST-REx-ID: 8263 | OA
Shelyakin, P. V., Bochkareva, O., Karan, A. A., & Gelfand, M. S. (2019). Micro-evolution of three Streptococcus species: Selection, antigenic variation, and horizontal gene inflow. BMC Evolutionary Biology. Springer Nature. https://doi.org/10.1186/s12862-019-1403-6
[Published Version] View | DOI | Download Published Version (ext.)
 
[3]
2019 | Published | Journal Article | IST-REx-ID: 6898 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. BMC Genomics. BioMed Central. https://doi.org/10.1186/s12864-019-6059-5
[Published Version] View | Files available | DOI | WoS
 
[2]
2018 | Published | Journal Article | IST-REx-ID: 8262 | OA
Bochkareva, O., Moroz, E. V., Davydov, I. I., & Gelfand, M. S. (2018). Genome rearrangements and selection in multi-chromosome bacteria Burkholderia spp. BMC Genomics. Springer Nature. https://doi.org/10.1186/s12864-018-5245-1
[Published Version] View | DOI | Download Published Version (ext.)
 
[1]
2018 | Published | Journal Article | IST-REx-ID: 8265 | OA
Bochkareva, O., Dranenko, N. O., Ocheredko, E. S., Kanevsky, G. M., Lozinsky, Y. N., Khalaycheva, V. A., … Gelfand, M. S. (2018). Genome rearrangements and phylogeny reconstruction in Yersinia pestis. PeerJ. PeerJ. https://doi.org/10.7717/peerj.4545
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
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22 Publications

Mark all

[22]
2023 | Published | Journal Article | IST-REx-ID: 14716 | OA
Yurtseven, A., Buyanova, S., Agrawal, A. A. A., Bochkareva, O., & Kalinina, O. V. V. (2023). Machine learning and phylogenetic analysis allow for predicting antibiotic resistance in M. tuberculosis. BMC Microbiology. Springer Nature. https://doi.org/10.1186/s12866-023-03147-7
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[21]
2022 | Published | Journal Article | IST-REx-ID: 10927 | OA
Zabelkin, A., Yakovleva, Y., Bochkareva, O., & Alexeev, N. (2022). PaReBrick: PArallel REarrangements and BReaks identification toolkit. Bioinformatics. Oxford Academic. https://doi.org/10.1093/bioinformatics/btab691
[Published Version] View | Files available | DOI | WoS
 
[20]
2022 | Published | Journal Article | IST-REx-ID: 11344 | OA
Dranenko, N., Tutukina, M., Gelfand, M., Kondrashov, F., & Bochkareva, O. (2022). Chromosome-encoded IpaH ubiquitin ligases indicate non-human enteroinvasive Escherichia. Scientific Reports. Springer Nature. https://doi.org/10.1038/s41598-022-10827-3
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[19]
2021 | Published | Journal Article | IST-REx-ID: 9380 | OA
Seferbekova, Z., Zabelkin, A., Yakovleva, Y., Afasizhev, R., Dranenko, N. O., Alexeev, N., … Bochkareva, O. (2021). High rates of genome rearrangements and pathogenicity of Shigella spp. Frontiers in Microbiology. Frontiers. https://doi.org/10.3389/fmicb.2021.628622
[Published Version] View | Files available | DOI | WoS
 
[18]
2020 | Published | Conference Paper | IST-REx-ID: 15071 | OA
Oshurkova, V., Troshina, O., Trubitsyn, V., Ryzhmanova, Y., Bochkareva, O., & Shcherbakova, V. (2020). Characterization of methanosarcina mazei JL01 isolated from holocene arctic permafrost and study of the archaeon cooperation with bacterium Sphaerochaeta associata GLS2T. In Proceedings of 1st International Electronic Conference on Microbiology. Virtual: MDPI. https://doi.org/10.3390/ecm2020-07116
[Published Version] View | Files available | DOI
 
[17]
2019 | Research Data Reference | IST-REx-ID: 9731 | OA
Sigalova, O., Chaplin, A., Bochkareva, O., Shelyakin, P., Filaretov, V., Akkuratov, E., … Gelfand, M. S. (2019). Additional file 11 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808772.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[16]
2019 | Research Data Reference | IST-REx-ID: 9783 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 10 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808760.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[15]
2019 | Research Data Reference | IST-REx-ID: 9890 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 15 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808802.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[14]
2019 | Research Data Reference | IST-REx-ID: 9892 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 16 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808814.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[13]
2019 | Research Data Reference | IST-REx-ID: 9893 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 17 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808820.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[12]
2019 | Research Data Reference | IST-REx-ID: 9894 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 18 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808826.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[11]
2019 | Research Data Reference | IST-REx-ID: 9895 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 19 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808835.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[10]
2019 | Research Data Reference | IST-REx-ID: 9896 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 1 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808841.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[9]
2019 | Research Data Reference | IST-REx-ID: 9897 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 20 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808850.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[8]
2019 | Research Data Reference | IST-REx-ID: 9898 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 21 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808859.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[7]
2019 | Research Data Reference | IST-REx-ID: 9899 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 2 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808865.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[6]
2019 | Research Data Reference | IST-REx-ID: 9900 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 5 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808886.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[5]
2019 | Research Data Reference | IST-REx-ID: 9901 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 9 of Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. Springer Nature. https://doi.org/10.6084/m9.figshare.9808907.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[4]
2019 | Published | Journal Article | IST-REx-ID: 8263 | OA
Shelyakin, P. V., Bochkareva, O., Karan, A. A., & Gelfand, M. S. (2019). Micro-evolution of three Streptococcus species: Selection, antigenic variation, and horizontal gene inflow. BMC Evolutionary Biology. Springer Nature. https://doi.org/10.1186/s12862-019-1403-6
[Published Version] View | DOI | Download Published Version (ext.)
 
[3]
2019 | Published | Journal Article | IST-REx-ID: 6898 | OA
Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov, V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. BMC Genomics. BioMed Central. https://doi.org/10.1186/s12864-019-6059-5
[Published Version] View | Files available | DOI | WoS
 
[2]
2018 | Published | Journal Article | IST-REx-ID: 8262 | OA
Bochkareva, O., Moroz, E. V., Davydov, I. I., & Gelfand, M. S. (2018). Genome rearrangements and selection in multi-chromosome bacteria Burkholderia spp. BMC Genomics. Springer Nature. https://doi.org/10.1186/s12864-018-5245-1
[Published Version] View | DOI | Download Published Version (ext.)
 
[1]
2018 | Published | Journal Article | IST-REx-ID: 8265 | OA
Bochkareva, O., Dranenko, N. O., Ocheredko, E. S., Kanevsky, G. M., Lozinsky, Y. N., Khalaycheva, V. A., … Gelfand, M. S. (2018). Genome rearrangements and phylogeny reconstruction in Yersinia pestis. PeerJ. PeerJ. https://doi.org/10.7717/peerj.4545
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
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