Xiaoqi Feng

24 Publications

Mark all

[24]
2025 | Published | Journal Article | IST-REx-ID: 19436 | OA
Zhang J, Wu D, Zhang Y, Feng X, Gao H. 2025. DNA methylation dynamics in male germline development in Brassica Rapa. Molecular Horticulture. 5, 16.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[23]
2025 | In Press | Journal Article | IST-REx-ID: 19602 | OA
Walker J, Zhang J, Liu Y, Xu S, Yu Y, Vickers M, Ouyang W, Tálas J, Dolan L, Nakajima K, Feng X. Extensive N4 cytosine methylation is essential for Marchantia sperm function. Cell.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[22]
2024 | Published | Journal Article | IST-REx-ID: 15375 | OA
He S, Yu Y, Wang L, Zhang J, Bai Z, Li G, Li P, Feng X. 2024. Linker histone H1 drives heterochromatin condensation via phase separation in Arabidopsis. The Plant Cell. 36(5), 1829–1843.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[21]
2023 | Published | Journal Article | IST-REx-ID: 12668 | OA
Zhao L, Yang Y, Chen J, Lin X, Zhang H, Wang H, Wang H, Bie X, Jiang J, Feng X, Fu X, Zhang X, Du Z, Xiao J. 2023. Dynamic chromatin regulatory programs during embryogenesis of hexaploid wheat. Genome Biology. 24, 7.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[20]
2023 | Published | Journal Article | IST-REx-ID: 12669 | OA
Manavella PA, Godoy Herz MA, Kornblihtt AR, Sorenson R, Sieburth LE, Nakaminami K, Seki M, Ding Y, Sun Q, Kang H, Ariel FD, Crespi M, Giudicatti AJ, Cai Q, Jin H, Feng X, Qi Y, Pikaard CS. 2023. Beyond transcription: compelling open questions in plant RNA biology. The Plant Cell. 35(6), koac346.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[19]
2023 | Published | Journal Article | IST-REx-ID: 12672 | OA
Lyons DB, Briffa A, He S, Choi J, Hollwey E, Colicchio J, Anderson I, Feng X, Howard M, Zilberman D. 2023. Extensive de novo activity stabilizes epigenetic inheritance of CG methylation in Arabidopsis transposons. Cell Reports. 42(3), 112132.
[Published Version] View | Files available | DOI | WoS
 
[18]
2022 | Published | Journal Article | IST-REx-ID: 12670 | OA
He S, Feng X. 2022. DNA methylation dynamics during germline development. Journal of Integrative Plant Biology. 64(12), 2240–2251.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[17]
2022 | Published | Journal Article | IST-REx-ID: 12671 | OA
Buttress T, He S, Wang L, Zhou S, Saalbach G, Vickers M, Li G, Li P, Feng X. 2022. Histone H2B.8 compacts flowering plant sperm through chromatin phase separation. Nature. 611(7936), 614–622.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[16]
2021 | Published | Journal Article | IST-REx-ID: 12186
Ding P, Sakai T, Krishna Shrestha R, Manosalva Perez N, Guo W, Ngou BPM, He S, Liu C, Feng X, Zhang R, Vandepoele K, MacLean D, Jones JDG. 2021. Chromatin accessibility landscapes activated by cell-surface and intracellular immune receptors. Journal of Experimental Botany. 72(22), 7927–7941.
View | DOI | PubMed | Europe PMC
 
[15]
2021 | Published | Journal Article | IST-REx-ID: 12187 | OA
Long J, Walker J, She W, Aldridge B, Gao H, Deans S, Vickers M, Feng X. 2021. Nurse cell-derived small RNAs define paternal epigenetic inheritance in Arabidopsis. Science. 373(6550).
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC
 
[14]
2020 | Published | Journal Article | IST-REx-ID: 12188 | OA
Bloomer RH, Hutchison CE, Bäurle I, Walker J, Fang X, Perera P, Velanis CN, Gümüs S, Spanos C, Rappsilber J, Feng X, Goodrich J, Dean C. 2020. The  Arabidopsis epigenetic regulator ICU11 as an accessory protein of polycomb repressive complex 2. Proceedings of the National Academy of Sciences. 117(28), 16660–16666.
[Published Version] View | Files available | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[13]
2020 | Published | Journal Article | IST-REx-ID: 12189 | OA
Christophorou N, She W, Long J, Hurel A, Beaubiat S, Idir Y, Tagliaro-Jahns M, Chambon A, Solier V, Vezon D, Grelon M, Feng X, Bouché N, Mézard C. 2020. AXR1 affects DNA methylation independently of its role in regulating meiotic crossover localization. PLOS Genetics. 16(6), e1008894.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[12]
2019 | Published | Journal Article | IST-REx-ID: 12190
Lawrence EJ, Gao H, Tock AJ, Lambing C, Blackwell AR, Feng X, Henderson IR. 2019. Natural variation in TBP-ASSOCIATED FACTOR 4b controls meiotic crossover and germline transcription in Arabidopsis. Current Biology. 29(16), 2676–2686.e3.
View | DOI | PubMed | Europe PMC
 
[11]
2019 | Published | Journal Article | IST-REx-ID: 12192 | OA
He S, Vickers M, Zhang J, Feng X. 2019. Natural depletion of histone H1 in sex cells causes DNA demethylation, heterochromatin decondensation and transposon activation. eLife. 8, 42530.
[Published Version] View | Files available | DOI
 
[10]
2017 | Published | Journal Article | IST-REx-ID: 12193 | OA
Walker J, Gao H, Zhang J, Aldridge B, Vickers M, Higgins JD, Feng X. 2017. Sexual-lineage-specific DNA methylation regulates meiosis in Arabidopsis. Nature Genetics. 50(1), 130–137.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
[9]
2016 | Published | Journal Article | IST-REx-ID: 9473 | OA
Hsieh P-H, He S, Buttress T, Gao H, Couchman M, Fischer RL, Zilberman D, Feng X. 2016. Arabidopsis male sexual lineage exhibits more robust maintenance of CG methylation than somatic tissues. Proceedings of the National Academy of Sciences. 113(52), 15132–15137.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[8]
2016 | Published | Journal Article | IST-REx-ID: 9477 | OA
Park K, Kim MY, Vickers M, Park J-S, Hyun Y, Okamoto T, Zilberman D, Fischer RL, Feng X, Choi Y, Scholten S. 2016. DNA demethylation is initiated in the central cells of Arabidopsis and rice. Proceedings of the National Academy of Sciences. 113(52), 15138–15143.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[7]
2015 | Published | Journal Article | IST-REx-ID: 12196
Johnson KCM, Xia S, Feng X, Li X. 2015. The chromatin remodeler SPLAYED negatively regulates SNC1-mediated immunity. Plant and Cell Physiology. 56(8), 1616–1623.
View | DOI | PubMed | Europe PMC
 
[6]
2013 | Published | Journal Article | IST-REx-ID: 9520 | OA
Feng X, Zilberman D, Dickinson H. 2013. A conversation across generations: Soma-germ cell crosstalk in plants. Developmental Cell. 24(3), 215–225.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[5]
2012 | Published | Journal Article | IST-REx-ID: 12198 | OA
Ibarra CA, Feng X, Schoft VK, Hsieh T-F, Uzawa R, Rodrigues JA, Zemach A, Chumak N, Machlicova A, Nishimura T, Rojas D, Fischer RL, Tamaru H, Zilberman D. 2012. Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes. Science. 337(6100), 1360–1364.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[4]
2010 | Published | Journal Article | IST-REx-ID: 12199
Feng X, Dickinson HG. 2010. Tapetal cell fate, lineage and proliferation in the Arabidopsis anther. Development. 137(14), 2409–2416.
View | DOI | PubMed | Europe PMC
 
[3]
2010 | Published | Journal Article | IST-REx-ID: 12200
Feng X, Dickinson HG. 2010. Cell–cell interactions during patterning of the Arabidopsis anther. Biochemical Society Transactions. 38(2), 571–576.
View | DOI | PubMed | Europe PMC
 
[2]
2007 | Published | Journal Article | IST-REx-ID: 12201
Feng X, Dickinson HG. 2007. Packaging the male germline in plants. Trends in Genetics. 23(10), 503–510.
View | DOI | PubMed | Europe PMC
 
[1]
2004 | Published | Journal Article | IST-REx-ID: 12203
Liao Z, Chen M, Gong Y, Guo L, Tan Q, Feng X, Sun X, Tan F, Tang K. 2004. A new geranylgeranyl Diphosphate synthase gene from Ginkgo biloba, which intermediates the biosynthesis of the key precursor for ginkgolides. DNA Sequence. 15(2), 153–158.
View | DOI | PubMed | Europe PMC
 
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Citation Style: ISTA Annual Report

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3 Grants


Establishment, modulation and inheritance of sexual lineage specific DNA methylation in plants (SexMeth)

2023-01-01 – 2024-05-31
European Research Council

EMBO Young Investigator Program - Xiao Feng

2023-05-22 – 2025-12-31
European Molecular Biology Organization

Mechanisms and biological functions of H3K27me3 reprogramming in plant microspores (MagicSpore)

2024-06-01 – 2029-05-31
European Research Council

24 Publications

Mark all

[24]
2025 | Published | Journal Article | IST-REx-ID: 19436 | OA
Zhang J, Wu D, Zhang Y, Feng X, Gao H. 2025. DNA methylation dynamics in male germline development in Brassica Rapa. Molecular Horticulture. 5, 16.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[23]
2025 | In Press | Journal Article | IST-REx-ID: 19602 | OA
Walker J, Zhang J, Liu Y, Xu S, Yu Y, Vickers M, Ouyang W, Tálas J, Dolan L, Nakajima K, Feng X. Extensive N4 cytosine methylation is essential for Marchantia sperm function. Cell.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[22]
2024 | Published | Journal Article | IST-REx-ID: 15375 | OA
He S, Yu Y, Wang L, Zhang J, Bai Z, Li G, Li P, Feng X. 2024. Linker histone H1 drives heterochromatin condensation via phase separation in Arabidopsis. The Plant Cell. 36(5), 1829–1843.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[21]
2023 | Published | Journal Article | IST-REx-ID: 12668 | OA
Zhao L, Yang Y, Chen J, Lin X, Zhang H, Wang H, Wang H, Bie X, Jiang J, Feng X, Fu X, Zhang X, Du Z, Xiao J. 2023. Dynamic chromatin regulatory programs during embryogenesis of hexaploid wheat. Genome Biology. 24, 7.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[20]
2023 | Published | Journal Article | IST-REx-ID: 12669 | OA
Manavella PA, Godoy Herz MA, Kornblihtt AR, Sorenson R, Sieburth LE, Nakaminami K, Seki M, Ding Y, Sun Q, Kang H, Ariel FD, Crespi M, Giudicatti AJ, Cai Q, Jin H, Feng X, Qi Y, Pikaard CS. 2023. Beyond transcription: compelling open questions in plant RNA biology. The Plant Cell. 35(6), koac346.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[19]
2023 | Published | Journal Article | IST-REx-ID: 12672 | OA
Lyons DB, Briffa A, He S, Choi J, Hollwey E, Colicchio J, Anderson I, Feng X, Howard M, Zilberman D. 2023. Extensive de novo activity stabilizes epigenetic inheritance of CG methylation in Arabidopsis transposons. Cell Reports. 42(3), 112132.
[Published Version] View | Files available | DOI | WoS
 
[18]
2022 | Published | Journal Article | IST-REx-ID: 12670 | OA
He S, Feng X. 2022. DNA methylation dynamics during germline development. Journal of Integrative Plant Biology. 64(12), 2240–2251.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[17]
2022 | Published | Journal Article | IST-REx-ID: 12671 | OA
Buttress T, He S, Wang L, Zhou S, Saalbach G, Vickers M, Li G, Li P, Feng X. 2022. Histone H2B.8 compacts flowering plant sperm through chromatin phase separation. Nature. 611(7936), 614–622.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[16]
2021 | Published | Journal Article | IST-REx-ID: 12186
Ding P, Sakai T, Krishna Shrestha R, Manosalva Perez N, Guo W, Ngou BPM, He S, Liu C, Feng X, Zhang R, Vandepoele K, MacLean D, Jones JDG. 2021. Chromatin accessibility landscapes activated by cell-surface and intracellular immune receptors. Journal of Experimental Botany. 72(22), 7927–7941.
View | DOI | PubMed | Europe PMC
 
[15]
2021 | Published | Journal Article | IST-REx-ID: 12187 | OA
Long J, Walker J, She W, Aldridge B, Gao H, Deans S, Vickers M, Feng X. 2021. Nurse cell-derived small RNAs define paternal epigenetic inheritance in Arabidopsis. Science. 373(6550).
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC
 
[14]
2020 | Published | Journal Article | IST-REx-ID: 12188 | OA
Bloomer RH, Hutchison CE, Bäurle I, Walker J, Fang X, Perera P, Velanis CN, Gümüs S, Spanos C, Rappsilber J, Feng X, Goodrich J, Dean C. 2020. The  Arabidopsis epigenetic regulator ICU11 as an accessory protein of polycomb repressive complex 2. Proceedings of the National Academy of Sciences. 117(28), 16660–16666.
[Published Version] View | Files available | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[13]
2020 | Published | Journal Article | IST-REx-ID: 12189 | OA
Christophorou N, She W, Long J, Hurel A, Beaubiat S, Idir Y, Tagliaro-Jahns M, Chambon A, Solier V, Vezon D, Grelon M, Feng X, Bouché N, Mézard C. 2020. AXR1 affects DNA methylation independently of its role in regulating meiotic crossover localization. PLOS Genetics. 16(6), e1008894.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[12]
2019 | Published | Journal Article | IST-REx-ID: 12190
Lawrence EJ, Gao H, Tock AJ, Lambing C, Blackwell AR, Feng X, Henderson IR. 2019. Natural variation in TBP-ASSOCIATED FACTOR 4b controls meiotic crossover and germline transcription in Arabidopsis. Current Biology. 29(16), 2676–2686.e3.
View | DOI | PubMed | Europe PMC
 
[11]
2019 | Published | Journal Article | IST-REx-ID: 12192 | OA
He S, Vickers M, Zhang J, Feng X. 2019. Natural depletion of histone H1 in sex cells causes DNA demethylation, heterochromatin decondensation and transposon activation. eLife. 8, 42530.
[Published Version] View | Files available | DOI
 
[10]
2017 | Published | Journal Article | IST-REx-ID: 12193 | OA
Walker J, Gao H, Zhang J, Aldridge B, Vickers M, Higgins JD, Feng X. 2017. Sexual-lineage-specific DNA methylation regulates meiosis in Arabidopsis. Nature Genetics. 50(1), 130–137.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
[9]
2016 | Published | Journal Article | IST-REx-ID: 9473 | OA
Hsieh P-H, He S, Buttress T, Gao H, Couchman M, Fischer RL, Zilberman D, Feng X. 2016. Arabidopsis male sexual lineage exhibits more robust maintenance of CG methylation than somatic tissues. Proceedings of the National Academy of Sciences. 113(52), 15132–15137.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[8]
2016 | Published | Journal Article | IST-REx-ID: 9477 | OA
Park K, Kim MY, Vickers M, Park J-S, Hyun Y, Okamoto T, Zilberman D, Fischer RL, Feng X, Choi Y, Scholten S. 2016. DNA demethylation is initiated in the central cells of Arabidopsis and rice. Proceedings of the National Academy of Sciences. 113(52), 15138–15143.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[7]
2015 | Published | Journal Article | IST-REx-ID: 12196
Johnson KCM, Xia S, Feng X, Li X. 2015. The chromatin remodeler SPLAYED negatively regulates SNC1-mediated immunity. Plant and Cell Physiology. 56(8), 1616–1623.
View | DOI | PubMed | Europe PMC
 
[6]
2013 | Published | Journal Article | IST-REx-ID: 9520 | OA
Feng X, Zilberman D, Dickinson H. 2013. A conversation across generations: Soma-germ cell crosstalk in plants. Developmental Cell. 24(3), 215–225.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[5]
2012 | Published | Journal Article | IST-REx-ID: 12198 | OA
Ibarra CA, Feng X, Schoft VK, Hsieh T-F, Uzawa R, Rodrigues JA, Zemach A, Chumak N, Machlicova A, Nishimura T, Rojas D, Fischer RL, Tamaru H, Zilberman D. 2012. Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes. Science. 337(6100), 1360–1364.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[4]
2010 | Published | Journal Article | IST-REx-ID: 12199
Feng X, Dickinson HG. 2010. Tapetal cell fate, lineage and proliferation in the Arabidopsis anther. Development. 137(14), 2409–2416.
View | DOI | PubMed | Europe PMC
 
[3]
2010 | Published | Journal Article | IST-REx-ID: 12200
Feng X, Dickinson HG. 2010. Cell–cell interactions during patterning of the Arabidopsis anther. Biochemical Society Transactions. 38(2), 571–576.
View | DOI | PubMed | Europe PMC
 
[2]
2007 | Published | Journal Article | IST-REx-ID: 12201
Feng X, Dickinson HG. 2007. Packaging the male germline in plants. Trends in Genetics. 23(10), 503–510.
View | DOI | PubMed | Europe PMC
 
[1]
2004 | Published | Journal Article | IST-REx-ID: 12203
Liao Z, Chen M, Gong Y, Guo L, Tan Q, Feng X, Sun X, Tan F, Tang K. 2004. A new geranylgeranyl Diphosphate synthase gene from Ginkgo biloba, which intermediates the biosynthesis of the key precursor for ginkgolides. DNA Sequence. 15(2), 153–158.
View | DOI | PubMed | Europe PMC
 
Marked Publication(s)

Search

Filter Publications

Display / Sort

Citation Style: ISTA Annual Report

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