Xiaoqi Feng

24 Publications

Mark all

[24]
2025 | Published | Journal Article | IST-REx-ID: 19436 | OA
DNA methylation dynamics in male germline development in Brassica Rapa
J. Zhang, D. Wu, Y. Zhang, X. Feng, H. Gao, Molecular Horticulture 5 (2025).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[23]
2025 | In Press | Journal Article | IST-REx-ID: 19602 | OA
Extensive N4 cytosine methylation is essential for Marchantia sperm function
J. Walker, J. Zhang, Y. Liu, S. Xu, Y. Yu, M. Vickers, W. Ouyang, J. Tálas, L. Dolan, K. Nakajima, X. Feng, Cell (n.d.).
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[22]
2024 | Published | Journal Article | IST-REx-ID: 15375 | OA
Linker histone H1 drives heterochromatin condensation via phase separation in Arabidopsis
S. He, Y. Yu, L. Wang, J. Zhang, Z. Bai, G. Li, P. Li, X. Feng, The Plant Cell 36 (2024) 1829–1843.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[21]
2023 | Published | Journal Article | IST-REx-ID: 12668 | OA
Dynamic chromatin regulatory programs during embryogenesis of hexaploid wheat
L. Zhao, Y. Yang, J. Chen, X. Lin, H. Zhang, H. Wang, H. Wang, X. Bie, J. Jiang, X. Feng, X. Fu, X. Zhang, Z. Du, J. Xiao, Genome Biology 24 (2023).
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[20]
2023 | Published | Journal Article | IST-REx-ID: 12669 | OA
Beyond transcription: compelling open questions in plant RNA biology
P.A. Manavella, M.A. Godoy Herz, A.R. Kornblihtt, R. Sorenson, L.E. Sieburth, K. Nakaminami, M. Seki, Y. Ding, Q. Sun, H. Kang, F.D. Ariel, M. Crespi, A.J. Giudicatti, Q. Cai, H. Jin, X. Feng, Y. Qi, C.S. Pikaard, The Plant Cell 35 (2023).
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[19]
2023 | Published | Journal Article | IST-REx-ID: 12672 | OA
Extensive de novo activity stabilizes epigenetic inheritance of CG methylation in Arabidopsis transposons
D.B. Lyons, A. Briffa, S. He, J. Choi, E. Hollwey, J. Colicchio, I. Anderson, X. Feng, M. Howard, D. Zilberman, Cell Reports 42 (2023).
[Published Version] View | Files available | DOI | WoS
 
[18]
2022 | Published | Journal Article | IST-REx-ID: 12670 | OA
DNA methylation dynamics during germline development
S. He, X. Feng, Journal of Integrative Plant Biology 64 (2022) 2240–2251.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[17]
2022 | Published | Journal Article | IST-REx-ID: 12671 | OA
Histone H2B.8 compacts flowering plant sperm through chromatin phase separation
T. Buttress, S. He, L. Wang, S. Zhou, G. Saalbach, M. Vickers, G. Li, P. Li, X. Feng, Nature 611 (2022) 614–622.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[16]
2021 | Published | Journal Article | IST-REx-ID: 12186
Chromatin accessibility landscapes activated by cell-surface and intracellular immune receptors
P. Ding, T. Sakai, R. Krishna Shrestha, N. Manosalva Perez, W. Guo, B.P.M. Ngou, S. He, C. Liu, X. Feng, R. Zhang, K. Vandepoele, D. MacLean, J.D.G. Jones, Journal of Experimental Botany 72 (2021) 7927–7941.
View | DOI | PubMed | Europe PMC
 
[15]
2021 | Published | Journal Article | IST-REx-ID: 12187 | OA
Nurse cell-derived small RNAs define paternal epigenetic inheritance in Arabidopsis
J. Long, J. Walker, W. She, B. Aldridge, H. Gao, S. Deans, M. Vickers, X. Feng, Science 373 (2021).
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC
 
[14]
2020 | Published | Journal Article | IST-REx-ID: 12188 | OA
The Arabidopsis epigenetic regulator ICU11 as an accessory protein of polycomb repressive complex 2
R.H. Bloomer, C.E. Hutchison, I. Bäurle, J. Walker, X. Fang, P. Perera, C.N. Velanis, S. Gümüs, C. Spanos, J. Rappsilber, X. Feng, J. Goodrich, C. Dean, Proceedings of the National Academy of Sciences 117 (2020) 16660–16666.
[Published Version] View | Files available | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[13]
2020 | Published | Journal Article | IST-REx-ID: 12189 | OA
AXR1 affects DNA methylation independently of its role in regulating meiotic crossover localization
N. Christophorou, W. She, J. Long, A. Hurel, S. Beaubiat, Y. Idir, M. Tagliaro-Jahns, A. Chambon, V. Solier, D. Vezon, M. Grelon, X. Feng, N. Bouché, C. Mézard, PLOS Genetics 16 (2020).
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[12]
2019 | Published | Journal Article | IST-REx-ID: 12190
Natural variation in TBP-ASSOCIATED FACTOR 4b controls meiotic crossover and germline transcription in Arabidopsis
E.J. Lawrence, H. Gao, A.J. Tock, C. Lambing, A.R. Blackwell, X. Feng, I.R. Henderson, Current Biology 29 (2019) 2676–2686.e3.
View | DOI | PubMed | Europe PMC
 
[11]
2019 | Published | Journal Article | IST-REx-ID: 12192 | OA
Natural depletion of histone H1 in sex cells causes DNA demethylation, heterochromatin decondensation and transposon activation
S. He, M. Vickers, J. Zhang, X. Feng, ELife 8 (2019).
[Published Version] View | Files available | DOI
 
[10]
2017 | Published | Journal Article | IST-REx-ID: 12193 | OA
Sexual-lineage-specific DNA methylation regulates meiosis in Arabidopsis
J. Walker, H. Gao, J. Zhang, B. Aldridge, M. Vickers, J.D. Higgins, X. Feng, Nature Genetics 50 (2017) 130–137.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
[9]
2016 | Published | Journal Article | IST-REx-ID: 9473 | OA
Arabidopsis male sexual lineage exhibits more robust maintenance of CG methylation than somatic tissues
P.-H. Hsieh, S. He, T. Buttress, H. Gao, M. Couchman, R.L. Fischer, D. Zilberman, X. Feng, Proceedings of the National Academy of Sciences 113 (2016) 15132–15137.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[8]
2016 | Published | Journal Article | IST-REx-ID: 9477 | OA
DNA demethylation is initiated in the central cells of Arabidopsis and rice
K. Park, M.Y. Kim, M. Vickers, J.-S. Park, Y. Hyun, T. Okamoto, D. Zilberman, R.L. Fischer, X. Feng, Y. Choi, S. Scholten, Proceedings of the National Academy of Sciences 113 (2016) 15138–15143.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[7]
2015 | Published | Journal Article | IST-REx-ID: 12196
The chromatin remodeler SPLAYED negatively regulates SNC1-mediated immunity
K.C.M. Johnson, S. Xia, X. Feng, X. Li, Plant and Cell Physiology 56 (2015) 1616–1623.
View | DOI | PubMed | Europe PMC
 
[6]
2013 | Published | Journal Article | IST-REx-ID: 9520 | OA
A conversation across generations: Soma-germ cell crosstalk in plants
X. Feng, D. Zilberman, H. Dickinson, Developmental Cell 24 (2013) 215–225.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[5]
2012 | Published | Journal Article | IST-REx-ID: 12198 | OA
Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes
C.A. Ibarra, X. Feng, V.K. Schoft, T.-F. Hsieh, R. Uzawa, J.A. Rodrigues, A. Zemach, N. Chumak, A. Machlicova, T. Nishimura, D. Rojas, R.L. Fischer, H. Tamaru, D. Zilberman, Science 337 (2012) 1360–1364.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[4]
2010 | Published | Journal Article | IST-REx-ID: 12199
Tapetal cell fate, lineage and proliferation in the Arabidopsis anther
X. Feng, H.G. Dickinson, Development 137 (2010) 2409–2416.
View | DOI | PubMed | Europe PMC
 
[3]
2010 | Published | Journal Article | IST-REx-ID: 12200
Cell–cell interactions during patterning of the Arabidopsis anther
X. Feng, H.G. Dickinson, Biochemical Society Transactions 38 (2010) 571–576.
View | DOI | PubMed | Europe PMC
 
[2]
2007 | Published | Journal Article | IST-REx-ID: 12201
Packaging the male germline in plants
X. Feng, H.G. Dickinson, Trends in Genetics 23 (2007) 503–510.
View | DOI | PubMed | Europe PMC
 
[1]
2004 | Published | Journal Article | IST-REx-ID: 12203
A new geranylgeranyl Diphosphate synthase gene from Ginkgo biloba, which intermediates the biosynthesis of the key precursor for ginkgolides
Z. Liao, M. Chen, Y. Gong, L. Guo, Q. Tan, X. Feng, X. Sun, F. Tan, K. Tang, DNA Sequence 15 (2004) 153–158.
View | DOI | PubMed | Europe PMC
 
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3 Grants


Establishment, modulation and inheritance of sexual lineage specific DNA methylation in plants (SexMeth)

2023-01-01 – 2024-05-31
European Research Council

EMBO Young Investigator Program - Xiao Feng

2023-05-22 – 2025-12-31
European Molecular Biology Organization

Mechanisms and biological functions of H3K27me3 reprogramming in plant microspores (MagicSpore)

2024-06-01 – 2029-05-31
European Research Council

24 Publications

Mark all

[24]
2025 | Published | Journal Article | IST-REx-ID: 19436 | OA
DNA methylation dynamics in male germline development in Brassica Rapa
J. Zhang, D. Wu, Y. Zhang, X. Feng, H. Gao, Molecular Horticulture 5 (2025).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[23]
2025 | In Press | Journal Article | IST-REx-ID: 19602 | OA
Extensive N4 cytosine methylation is essential for Marchantia sperm function
J. Walker, J. Zhang, Y. Liu, S. Xu, Y. Yu, M. Vickers, W. Ouyang, J. Tálas, L. Dolan, K. Nakajima, X. Feng, Cell (n.d.).
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[22]
2024 | Published | Journal Article | IST-REx-ID: 15375 | OA
Linker histone H1 drives heterochromatin condensation via phase separation in Arabidopsis
S. He, Y. Yu, L. Wang, J. Zhang, Z. Bai, G. Li, P. Li, X. Feng, The Plant Cell 36 (2024) 1829–1843.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[21]
2023 | Published | Journal Article | IST-REx-ID: 12668 | OA
Dynamic chromatin regulatory programs during embryogenesis of hexaploid wheat
L. Zhao, Y. Yang, J. Chen, X. Lin, H. Zhang, H. Wang, H. Wang, X. Bie, J. Jiang, X. Feng, X. Fu, X. Zhang, Z. Du, J. Xiao, Genome Biology 24 (2023).
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[20]
2023 | Published | Journal Article | IST-REx-ID: 12669 | OA
Beyond transcription: compelling open questions in plant RNA biology
P.A. Manavella, M.A. Godoy Herz, A.R. Kornblihtt, R. Sorenson, L.E. Sieburth, K. Nakaminami, M. Seki, Y. Ding, Q. Sun, H. Kang, F.D. Ariel, M. Crespi, A.J. Giudicatti, Q. Cai, H. Jin, X. Feng, Y. Qi, C.S. Pikaard, The Plant Cell 35 (2023).
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[19]
2023 | Published | Journal Article | IST-REx-ID: 12672 | OA
Extensive de novo activity stabilizes epigenetic inheritance of CG methylation in Arabidopsis transposons
D.B. Lyons, A. Briffa, S. He, J. Choi, E. Hollwey, J. Colicchio, I. Anderson, X. Feng, M. Howard, D. Zilberman, Cell Reports 42 (2023).
[Published Version] View | Files available | DOI | WoS
 
[18]
2022 | Published | Journal Article | IST-REx-ID: 12670 | OA
DNA methylation dynamics during germline development
S. He, X. Feng, Journal of Integrative Plant Biology 64 (2022) 2240–2251.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[17]
2022 | Published | Journal Article | IST-REx-ID: 12671 | OA
Histone H2B.8 compacts flowering plant sperm through chromatin phase separation
T. Buttress, S. He, L. Wang, S. Zhou, G. Saalbach, M. Vickers, G. Li, P. Li, X. Feng, Nature 611 (2022) 614–622.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[16]
2021 | Published | Journal Article | IST-REx-ID: 12186
Chromatin accessibility landscapes activated by cell-surface and intracellular immune receptors
P. Ding, T. Sakai, R. Krishna Shrestha, N. Manosalva Perez, W. Guo, B.P.M. Ngou, S. He, C. Liu, X. Feng, R. Zhang, K. Vandepoele, D. MacLean, J.D.G. Jones, Journal of Experimental Botany 72 (2021) 7927–7941.
View | DOI | PubMed | Europe PMC
 
[15]
2021 | Published | Journal Article | IST-REx-ID: 12187 | OA
Nurse cell-derived small RNAs define paternal epigenetic inheritance in Arabidopsis
J. Long, J. Walker, W. She, B. Aldridge, H. Gao, S. Deans, M. Vickers, X. Feng, Science 373 (2021).
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC
 
[14]
2020 | Published | Journal Article | IST-REx-ID: 12188 | OA
The Arabidopsis epigenetic regulator ICU11 as an accessory protein of polycomb repressive complex 2
R.H. Bloomer, C.E. Hutchison, I. Bäurle, J. Walker, X. Fang, P. Perera, C.N. Velanis, S. Gümüs, C. Spanos, J. Rappsilber, X. Feng, J. Goodrich, C. Dean, Proceedings of the National Academy of Sciences 117 (2020) 16660–16666.
[Published Version] View | Files available | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[13]
2020 | Published | Journal Article | IST-REx-ID: 12189 | OA
AXR1 affects DNA methylation independently of its role in regulating meiotic crossover localization
N. Christophorou, W. She, J. Long, A. Hurel, S. Beaubiat, Y. Idir, M. Tagliaro-Jahns, A. Chambon, V. Solier, D. Vezon, M. Grelon, X. Feng, N. Bouché, C. Mézard, PLOS Genetics 16 (2020).
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[12]
2019 | Published | Journal Article | IST-REx-ID: 12190
Natural variation in TBP-ASSOCIATED FACTOR 4b controls meiotic crossover and germline transcription in Arabidopsis
E.J. Lawrence, H. Gao, A.J. Tock, C. Lambing, A.R. Blackwell, X. Feng, I.R. Henderson, Current Biology 29 (2019) 2676–2686.e3.
View | DOI | PubMed | Europe PMC
 
[11]
2019 | Published | Journal Article | IST-REx-ID: 12192 | OA
Natural depletion of histone H1 in sex cells causes DNA demethylation, heterochromatin decondensation and transposon activation
S. He, M. Vickers, J. Zhang, X. Feng, ELife 8 (2019).
[Published Version] View | Files available | DOI
 
[10]
2017 | Published | Journal Article | IST-REx-ID: 12193 | OA
Sexual-lineage-specific DNA methylation regulates meiosis in Arabidopsis
J. Walker, H. Gao, J. Zhang, B. Aldridge, M. Vickers, J.D. Higgins, X. Feng, Nature Genetics 50 (2017) 130–137.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
[9]
2016 | Published | Journal Article | IST-REx-ID: 9473 | OA
Arabidopsis male sexual lineage exhibits more robust maintenance of CG methylation than somatic tissues
P.-H. Hsieh, S. He, T. Buttress, H. Gao, M. Couchman, R.L. Fischer, D. Zilberman, X. Feng, Proceedings of the National Academy of Sciences 113 (2016) 15132–15137.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[8]
2016 | Published | Journal Article | IST-REx-ID: 9477 | OA
DNA demethylation is initiated in the central cells of Arabidopsis and rice
K. Park, M.Y. Kim, M. Vickers, J.-S. Park, Y. Hyun, T. Okamoto, D. Zilberman, R.L. Fischer, X. Feng, Y. Choi, S. Scholten, Proceedings of the National Academy of Sciences 113 (2016) 15138–15143.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[7]
2015 | Published | Journal Article | IST-REx-ID: 12196
The chromatin remodeler SPLAYED negatively regulates SNC1-mediated immunity
K.C.M. Johnson, S. Xia, X. Feng, X. Li, Plant and Cell Physiology 56 (2015) 1616–1623.
View | DOI | PubMed | Europe PMC
 
[6]
2013 | Published | Journal Article | IST-REx-ID: 9520 | OA
A conversation across generations: Soma-germ cell crosstalk in plants
X. Feng, D. Zilberman, H. Dickinson, Developmental Cell 24 (2013) 215–225.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[5]
2012 | Published | Journal Article | IST-REx-ID: 12198 | OA
Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes
C.A. Ibarra, X. Feng, V.K. Schoft, T.-F. Hsieh, R. Uzawa, J.A. Rodrigues, A. Zemach, N. Chumak, A. Machlicova, T. Nishimura, D. Rojas, R.L. Fischer, H. Tamaru, D. Zilberman, Science 337 (2012) 1360–1364.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[4]
2010 | Published | Journal Article | IST-REx-ID: 12199
Tapetal cell fate, lineage and proliferation in the Arabidopsis anther
X. Feng, H.G. Dickinson, Development 137 (2010) 2409–2416.
View | DOI | PubMed | Europe PMC
 
[3]
2010 | Published | Journal Article | IST-REx-ID: 12200
Cell–cell interactions during patterning of the Arabidopsis anther
X. Feng, H.G. Dickinson, Biochemical Society Transactions 38 (2010) 571–576.
View | DOI | PubMed | Europe PMC
 
[2]
2007 | Published | Journal Article | IST-REx-ID: 12201
Packaging the male germline in plants
X. Feng, H.G. Dickinson, Trends in Genetics 23 (2007) 503–510.
View | DOI | PubMed | Europe PMC
 
[1]
2004 | Published | Journal Article | IST-REx-ID: 12203
A new geranylgeranyl Diphosphate synthase gene from Ginkgo biloba, which intermediates the biosynthesis of the key precursor for ginkgolides
Z. Liao, M. Chen, Y. Gong, L. Guo, Q. Tan, X. Feng, X. Sun, F. Tan, K. Tang, DNA Sequence 15 (2004) 153–158.
View | DOI | PubMed | Europe PMC
 
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Citation Style: Default

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