International IST Postdoc Fellowship Programme
Project Period: 2012-07-01 – 2017-06-30
Externally Funded
Acronym
IST FELLOW
Grant Number
291734
Funding Organisation
EC/FP7
203 Publications
2018 | Journal Article | IST-REx-ID: 284 |

Maps on probability measures preserving certain distances - a survey and some new results
D. Virosztek, Acta Scientiarum Mathematicarum (Szeged) 84 (2018) 65–80.
View
| DOI
| Download Preprint (ext.)
| arXiv
D. Virosztek, Acta Scientiarum Mathematicarum (Szeged) 84 (2018) 65–80.
2018 | Journal Article | IST-REx-ID: 293 |

The signal-burying game can explain why we obscure positive traits and good deeds
M. Hoffman, C. Hilbe, M. Nowak, Nature Human Behaviour 2 (2018) 397–404.
View
| Files available
| DOI
M. Hoffman, C. Hilbe, M. Nowak, Nature Human Behaviour 2 (2018) 397–404.
2018 | Journal Article | IST-REx-ID: 294 |

Two-photon processes based on quantum commutators
F. Fratini, L. Safari, P. Amaro, J. Santos, Physical Review A - Atomic, Molecular, and Optical Physics 97 (2018).
View
| DOI
| Download Submitted Version (ext.)
| arXiv
F. Fratini, L. Safari, P. Amaro, J. Santos, Physical Review A - Atomic, Molecular, and Optical Physics 97 (2018).
2018 | Journal Article | IST-REx-ID: 305
Fabrication and operation of microfluidic hanging drop networks
P. Misun, A. Birchler, M. Lang, A. Hierlemann, O. Frey, Methods in Molecular Biology 1771 (2018) 183–202.
View
| DOI
P. Misun, A. Birchler, M. Lang, A. Hierlemann, O. Frey, Methods in Molecular Biology 1771 (2018) 183–202.
2018 | Journal Article | IST-REx-ID: 306 |

An introduction to the maximum entropy approach and its application to inference problems in biology
A. De Martino, D. De Martino, Heliyon 4 (2018).
View
| Files available
| DOI
A. De Martino, D. De Martino, Heliyon 4 (2018).
2018 | Journal Article | IST-REx-ID: 328 |

Exceeding the asymptotic limit of polymer drag reduction
G.H. Choueiri, J.M. Lopez Alonso, B. Hof, Physical Review Letters 120 (2018).
View
| DOI
| Download Preprint (ext.)
G.H. Choueiri, J.M. Lopez Alonso, B. Hof, Physical Review Letters 120 (2018).
2020 | Journal Article | IST-REx-ID: 7805 |

Synergistic on Auxin and Cytokinin 1 positively regulates growth and attenuates soil pathogen resistance
Hurny A, Cuesta C, Cavallari N, Ötvös K, Duclercq J, Dokládal L, Montesinos López JC, Gallemi M, Semeradova H, Rauter T, Stenzel I, Persiau G, Benade F, Bhalearo R, Sýkorová E, Gorzsás A, Sechet J, Mouille G, Heilmann I, De Jaeger G, Ludwig-Müller J, Benková E. 2020. Synergistic on Auxin and Cytokinin 1 positively regulates growth and attenuates soil pathogen resistance. Nature Communications. 11, 2170.
View
| Files available
| DOI
| PubMed | Europe PMC
Hurny A, Cuesta C, Cavallari N, Ötvös K, Duclercq J, Dokládal L, Montesinos López JC, Gallemi M, Semeradova H, Rauter T, Stenzel I, Persiau G, Benade F, Bhalearo R, Sýkorová E, Gorzsás A, Sechet J, Mouille G, Heilmann I, De Jaeger G, Ludwig-Müller J, Benková E. 2020. Synergistic on Auxin and Cytokinin 1 positively regulates growth and attenuates soil pathogen resistance. Nature Communications. 11, 2170.
2020 | Journal Article | IST-REx-ID: 7875 |

Microtubules control cellular shape and coherence in amoeboid migrating cells
A. Kopf, J. Renkawitz, R. Hauschild, I. Girkontaite, K. Tedford, J. Merrin, O. Thorn-Seshold, D. Trauner, H. Häcker, K.D. Fischer, E. Kiermaier, M.K. Sixt, The Journal of Cell Biology 219 (2020).
View
| Files available
| DOI
| PubMed | Europe PMC
A. Kopf, J. Renkawitz, R. Hauschild, I. Girkontaite, K. Tedford, J. Merrin, O. Thorn-Seshold, D. Trauner, H. Häcker, K.D. Fischer, E. Kiermaier, M.K. Sixt, The Journal of Cell Biology 219 (2020).
2017 | Journal Article | IST-REx-ID: 793 |

On the existence of ordinary triangles
R. Fulek, H. Mojarrad, M. Naszódi, J. Solymosi, S. Stich, M. Szedlák, Computational Geometry: Theory and Applications 66 (2017) 28–31.
View
| DOI
| Download Submitted Version (ext.)
R. Fulek, H. Mojarrad, M. Naszódi, J. Solymosi, S. Stich, M. Szedlák, Computational Geometry: Theory and Applications 66 (2017) 28–31.
2017 | Journal Article | IST-REx-ID: 795 |

Unified Hanani Tutte theorem
R. Fulek, J. Kynčl, D. Pálvölgyi, Electronic Journal of Combinatorics 24 (2017).
View
| Files available
| DOI
R. Fulek, J. Kynčl, D. Pálvölgyi, Electronic Journal of Combinatorics 24 (2017).
2016 | Conference Paper | IST-REx-ID: 8094 |

Self-organized control of an tendon driven arm by differential extrinsic plasticity
G.S. Martius, R. Hostettler, A. Knoll, R. Der, in:, Proceedings of the Artificial Life Conference 2016, MIT Press, 2016, pp. 142–143.
View
| Files available
| DOI
G.S. Martius, R. Hostettler, A. Knoll, R. Der, in:, Proceedings of the Artificial Life Conference 2016, MIT Press, 2016, pp. 142–143.
2017 | Journal Article | IST-REx-ID: 823 |

Phase transitions in integer linear problems
S. Colabrese, D. De Martino, L. Leuzzi, E. Marinari, Journal of Statistical Mechanics: Theory and Experiment 2017 (2017).
View
| DOI
| Download Submitted Version (ext.)
S. Colabrese, D. De Martino, L. Leuzzi, E. Marinari, Journal of Statistical Mechanics: Theory and Experiment 2017 (2017).
2020 | Journal Article | IST-REx-ID: 8325 |

Sandpile solitons via smoothing of superharmonic functions
N. Kalinin, M. Shkolnikov, Communications in Mathematical Physics 378 (2020) 1649–1675.
View
| DOI
| Download Preprint (ext.)
| arXiv
N. Kalinin, M. Shkolnikov, Communications in Mathematical Physics 378 (2020) 1649–1675.
2020 | Journal Article | IST-REx-ID: 8336 |

Cytokinin fluoroprobe reveals multiple sites of cytokinin perception at plasma membrane and endoplasmic reticulum
K. Kubiasova, J.C. Montesinos López, O. Šamajová, J. Nisler, V. Mik, H. Semeradova, L. Plíhalová, O. Novák, P. Marhavý, N. Cavallari, D. Zalabák, K. Berka, K. Doležal, P. Galuszka, J. Šamaj, M. Strnad, E. Benková, O. Plíhal, L. Spíchal, Nature Communications 11 (2020).
View
| Files available
| DOI
| PubMed | Europe PMC
K. Kubiasova, J.C. Montesinos López, O. Šamajová, J. Nisler, V. Mik, H. Semeradova, L. Plíhalová, O. Novák, P. Marhavý, N. Cavallari, D. Zalabák, K. Berka, K. Doležal, P. Galuszka, J. Šamaj, M. Strnad, E. Benková, O. Plíhal, L. Spíchal, Nature Communications 11 (2020).
2021 | Journal Article | IST-REx-ID: 8373 |

A divergence center interpretation of general symmetric Kubo-Ando means, and related weighted multivariate operator means
J. Pitrik, D. Virosztek, Linear Algebra and Its Applications 609 (2021) 203–217.
View
| DOI
| Download Preprint (ext.)
| arXiv
J. Pitrik, D. Virosztek, Linear Algebra and Its Applications 609 (2021) 203–217.
2021 | Journal Article | IST-REx-ID: 8582 |

Cellular requirements for PIN polar cargo clustering in Arabidopsis thaliana
H. Li, D. von Wangenheim, X. Zhang, S. Tan, N. Darwish-Miranda, S. Naramoto, K.T. Wabnik, R. de Rycke, W. Kaufmann, D.J. Gütl, R. Tejos, P. Grones, M. Ke, X. Chen, J. Dettmer, J. Friml, New Phytologist 229 (2021) 351–369.
View
| Files available
| DOI
H. Li, D. von Wangenheim, X. Zhang, S. Tan, N. Darwish-Miranda, S. Naramoto, K.T. Wabnik, R. de Rycke, W. Kaufmann, D.J. Gütl, R. Tejos, P. Grones, M. Ke, X. Chen, J. Dettmer, J. Friml, New Phytologist 229 (2021) 351–369.
2018 | Journal Article | IST-REx-ID: 454 |

Crosstalk in concurrent repeated games impedes direct reciprocity and requires stronger levels of forgiveness
J. Reiter, C. Hilbe, D. Rand, K. Chatterjee, M. Nowak, Nature Communications 9 (2018).
View
| Files available
| DOI
J. Reiter, C. Hilbe, D. Rand, K. Chatterjee, M. Nowak, Nature Communications 9 (2018).
2018 | Journal Article | IST-REx-ID: 457
Phage-host population dynamics promotes prophage acquisition in bacteria with innate immunity
M. Pleska, M. Lang, D. Refardt, B. Levin, C.C. Guet, Nature Ecology and Evolution 2 (2018) 359–366.
View
| Files available
| DOI
M. Pleska, M. Lang, D. Refardt, B. Levin, C.C. Guet, Nature Ecology and Evolution 2 (2018) 359–366.
2018 | Journal Article | IST-REx-ID: 458 |

Incircular nets and confocal conics
A. Akopyan, A. Bobenko, Transactions of the American Mathematical Society 370 (2018) 2825–2854.
View
| DOI
| Download Preprint (ext.)
A. Akopyan, A. Bobenko, Transactions of the American Mathematical Society 370 (2018) 2825–2854.
2017 | Journal Article | IST-REx-ID: 466 |

Unifying two views on multiple mean-payoff objectives in Markov decision processes
K. Chatterjee, Z. Křetínská, J. Kretinsky, Logical Methods in Computer Science 13 (2017).
View
| Files available
| DOI
K. Chatterjee, Z. Křetínská, J. Kretinsky, Logical Methods in Computer Science 13 (2017).
2017 | Journal Article | IST-REx-ID: 471 |

Faster statistical model checking for unbounded temporal properties
P. Daca, T.A. Henzinger, J. Kretinsky, T. Petrov, ACM Transactions on Computational Logic (TOCL) 18 (2017).
View
| Files available
| DOI
| Download Submitted Version (ext.)
P. Daca, T.A. Henzinger, J. Kretinsky, T. Petrov, ACM Transactions on Computational Logic (TOCL) 18 (2017).
2015 | Journal Article | IST-REx-ID: 473 |

Derivation of nonlinear gibbs measures from many-body quantum mechanics
M. Lewin, P. Nam, N. Rougerie, Journal de l’Ecole Polytechnique - Mathematiques 2 (2015) 65–115.
View
| Files available
| DOI
M. Lewin, P. Nam, N. Rougerie, Journal de l’Ecole Polytechnique - Mathematiques 2 (2015) 65–115.
2017 | Journal Article | IST-REx-ID: 484 |

Bogoliubov correction to the mean-field dynamics of interacting bosons
P. Nam, M.M. Napiórkowski, Advances in Theoretical and Mathematical Physics 21 (2017) 683–738.
View
| DOI
| Download Submitted Version (ext.)
P. Nam, M.M. Napiórkowski, Advances in Theoretical and Mathematical Physics 21 (2017) 683–738.
2017 | Journal Article | IST-REx-ID: 486 |

Scattering-aware texture reproduction for 3D printing
O. Elek, D. Sumin, R. Zhang, T. Weyrich, K. Myszkowski, B. Bickel, A. Wilkie, J. Krivanek, ACM Transactions on Graphics 36 (2017).
View
| Files available
| DOI
O. Elek, D. Sumin, R. Zhang, T. Weyrich, K. Myszkowski, B. Bickel, A. Wilkie, J. Krivanek, ACM Transactions on Graphics 36 (2017).
2017 | Journal Article | IST-REx-ID: 541 |

Cell-to-cell variation and specialization in sugar metabolism in clonal bacterial populations
N. Nikolic, F. Schreiber, A. Dal Co, D. Kiviet, T. Bergmiller, S. Littmann, M. Kuypers, M. Ackermann, PLoS Genetics 13 (2017).
View
| Files available
| DOI
N. Nikolic, F. Schreiber, A. Dal Co, D. Kiviet, T. Bergmiller, S. Littmann, M. Kuypers, M. Ackermann, PLoS Genetics 13 (2017).
2017 | Journal Article | IST-REx-ID: 548 |

Maximum entropy modeling of metabolic networks by constraining growth-rate moments predicts coexistence of phenotypes
D. De Martino, Physical Review E 96 (2017).
View
| DOI
| Download Submitted Version (ext.)
D. De Martino, Physical Review E 96 (2017).
2017 | Research Data | IST-REx-ID: 5565 |

Light Sheet Fluorescence microscopy of plant roots growing on the surface of a gel
D. von Wangenheim, R. Hauschild, J. Friml, (2017).
View
| Files available
| DOI
D. von Wangenheim, R. Hauschild, J. Friml, (2017).
2018 | Research Data | IST-REx-ID: 5587 |

Supporting materials "STATISTICAL MECHANICS FOR METABOLIC NETWORKS IN STEADY-STATE GROWTH"
D. De Martino, G. Tkačik, (2018).
View
| Files available
| DOI
D. De Martino, G. Tkačik, (2018).
2017 | Journal Article | IST-REx-ID: 560 |

On stochastic differential equations with arbitrarily slow convergence rates for strong approximation in two space dimensions
M. Gerencser, A. Jentzen, D. Salimova, Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences 473 (2017).
View
| DOI
| Download Submitted Version (ext.)
M. Gerencser, A. Jentzen, D. Salimova, Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences 473 (2017).
2018 | Journal Article | IST-REx-ID: 5676 |

Occluding junctions as novel regulators of tissue mechanics during wound repair
L. Carvalho, P. Patricio, S. Ponte, C.-P.J. Heisenberg, L. Almeida, A.S. Nunes, N.A.M. Araújo, A. Jacinto, Journal of Cell Biology 217 (2018) 4267–4283.
View
| DOI
| Download Submitted Version (ext.)
| PubMed | Europe PMC
L. Carvalho, P. Patricio, S. Ponte, C.-P.J. Heisenberg, L. Almeida, A.S. Nunes, N.A.M. Araújo, A. Jacinto, Journal of Cell Biology 217 (2018) 4267–4283.
2017 | Journal Article | IST-REx-ID: 568 |

Persistence of zero sets
P. Franek, M. Krcál, Homology, Homotopy and Applications 19 (2017) 313–342.
View
| DOI
| Download Submitted Version (ext.)
P. Franek, M. Krcál, Homology, Homotopy and Applications 19 (2017) 313–342.
2017 | Journal Article | IST-REx-ID: 570 |

Regulatory network structure determines patterns of intermolecular epistasis
M. Lagator, S. Sarikas, H. Acar, J.P. Bollback, C.C. Guet, ELife 6 (2017).
View
| Files available
| DOI
M. Lagator, S. Sarikas, H. Acar, J.P. Bollback, C.C. Guet, ELife 6 (2017).
2018 | Research Data | IST-REx-ID: 5757 |

Supplementary Files for "Pleiotropy modulates the efficacy of selection in Drosophila melanogaster"
C. Fraisse, (2018).
View
| Files available
| DOI
C. Fraisse, (2018).
2019 | Journal Article | IST-REx-ID: 5790 |

Extending partial representations of circle graphs
S. Chaplick, R. Fulek, P. Klavík, Journal of Graph Theory 91 (2019) 365–394.
View
| DOI
| Download Preprint (ext.)
| arXiv
S. Chaplick, R. Fulek, P. Klavík, Journal of Graph Theory 91 (2019) 365–394.
2018 | Journal Article | IST-REx-ID: 5794 |

Quantum groups as hidden symmetries of quantum impurities
E. Yakaboylu, M. Shkolnikov, M. Lemeshko, Physical Review Letters 121 (2018).
View
| DOI
| Download Preprint (ext.)
| arXiv
E. Yakaboylu, M. Shkolnikov, M. Lemeshko, Physical Review Letters 121 (2018).
2018 | Journal Article | IST-REx-ID: 58 |

Counting blanks in polygonal arrangements
A. Akopyan, E. Segal Halevi, SIAM Journal on Discrete Mathematics 32 (2018) 2242–2257.
View
| DOI
| Download Preprint (ext.)
| arXiv
A. Akopyan, E. Segal Halevi, SIAM Journal on Discrete Mathematics 32 (2018) 2242–2257.
2019 | Journal Article | IST-REx-ID: 5886 |

Variational approaches to quantum impurities: from the Fröhlich polaron to the angulon
X. Li, G. Bighin, E. Yakaboylu, M. Lemeshko, Molecular Physics (2019).
View
| Files available
| DOI
X. Li, G. Bighin, E. Yakaboylu, M. Lemeshko, Molecular Physics (2019).
2018 | Journal Article | IST-REx-ID: 5983 |

Theory of the rotating polaron: Spectrum and self-localization
E. Yakaboylu, B. Midya, A. Deuchert, N.K. Leopold, M. Lemeshko, Physical Review B 98 (2018).
View
| DOI
| Download Preprint (ext.)
| arXiv
E. Yakaboylu, B. Midya, A. Deuchert, N.K. Leopold, M. Lemeshko, Physical Review B 98 (2018).
2018 | Journal Article | IST-REx-ID: 5993 |

Algorithmic analysis of qualitative and quantitative termination problems for affine probabilistic programs
K. Chatterjee, H. Fu, P. Novotný, R. Hasheminezhad, ACM Transactions on Programming Languages and Systems 40 (2018).
View
| Files available
| DOI
| Download Submitted Version (ext.)
| arXiv
K. Chatterjee, H. Fu, P. Novotný, R. Hasheminezhad, ACM Transactions on Programming Languages and Systems 40 (2018).
2018 | Conference Paper | IST-REx-ID: 6012 |

Learning equations for extrapolation and control
S. Sahoo, C. Lampert, G.S. Martius, in:, Proceedings of the 35th International Conference on Machine Learning, International Machine Learning Society, 2018, pp. 4442–4450.
View
| Files available
| Download Preprint (ext.)
| arXiv
S. Sahoo, C. Lampert, G.S. Martius, in:, Proceedings of the 35th International Conference on Machine Learning, International Machine Learning Society, 2018, pp. 4442–4450.
2019 | Journal Article | IST-REx-ID: 6023 |

A SOSEKI-based coordinate system interprets global polarity cues in arabidopsis
S. Yoshida, A. Van Der Schuren, M. Van Dop, L. Van Galen, S. Saiga, M. Adibi, B. Möller, C.A. Ten Hove, P. Marhavý, R. Smith, J. Friml, D. Weijers, Nature Plants 5 (2019) 160–166.
View
| DOI
| Download Submitted Version (ext.)
S. Yoshida, A. Van Der Schuren, M. Van Dop, L. Van Galen, S. Saiga, M. Adibi, B. Möller, C.A. Ten Hove, P. Marhavý, R. Smith, J. Friml, D. Weijers, Nature Plants 5 (2019) 160–166.
2019 | Journal Article | IST-REx-ID: 6049 |

Feedback-induced self-oscillations in large interacting systems subjected to phase transitions
D. De Martino, Journal of Physics A: Mathematical and Theoretical 52 (2019).
View
| Files available
| DOI
D. De Martino, Journal of Physics A: Mathematical and Theoretical 52 (2019).
2020 | Journal Article | IST-REx-ID: 6997 |

Auxin guides roots to avoid obstacles during gravitropic growth
Y. Zhang, J. Friml, New Phytologist 225 (2020) 1049–1052.
View
| Files available
| DOI
| PubMed | Europe PMC
Y. Zhang, J. Friml, New Phytologist 225 (2020) 1049–1052.
2019 | Journal Article | IST-REx-ID: 7034 |

Counterexample to an extension of the Hanani-Tutte theorem on the surface of genus 4
R. Fulek, J. Kynčl, Combinatorica 39 (2019) 1267–1279.
View
| DOI
| Download Preprint (ext.)
| arXiv
R. Fulek, J. Kynčl, Combinatorica 39 (2019) 1267–1279.
2017 | Journal Article | IST-REx-ID: 707 |

A tight estimate for the waist of the ball
A. Akopyan, R. Karasev, Bulletin of the London Mathematical Society 49 (2017) 690–693.
View
| DOI
| Download Preprint (ext.)
A. Akopyan, R. Karasev, Bulletin of the London Mathematical Society 49 (2017) 690–693.
2017 | Journal Article | IST-REx-ID: 722 |

Shaping 3D root system architecture
E. Morris, M. Griffiths, A. Golebiowska, S. Mairhofer, J. Burr Hersey, T. Goh, D. von Wangenheim, B. Atkinson, C. Sturrock, J. Lynch, K. Vissenberg, K. Ritz, D. Wells, S. Mooney, M. Bennett, Current Biology 27 (2017) R919–R930.
View
| Files available
| DOI
| PubMed | Europe PMC
E. Morris, M. Griffiths, A. Golebiowska, S. Mairhofer, J. Burr Hersey, T. Goh, D. von Wangenheim, B. Atkinson, C. Sturrock, J. Lynch, K. Vissenberg, K. Ritz, D. Wells, S. Mooney, M. Bennett, Current Biology 27 (2017) R919–R930.
2017 | Journal Article | IST-REx-ID: 730
Maximum entropy models as a tool for building precise neural controls
C. Savin, G. Tkačik, Current Opinion in Neurobiology 46 (2017) 120–126.
View
| DOI
C. Savin, G. Tkačik, Current Opinion in Neurobiology 46 (2017) 120–126.
2020 | Journal Article | IST-REx-ID: 7343 |

Social immunity modulates competition between coinfecting pathogens
B. Milutinovic, M. Stock, A.V. Grasse, E. Naderlinger, C. Hilbe, S. Cremer, Ecology Letters 23 (2020) 565–574.
View
| Files available
| DOI
B. Milutinovic, M. Stock, A.V. Grasse, E. Naderlinger, C. Hilbe, S. Cremer, Ecology Letters 23 (2020) 565–574.
2017 | Journal Article | IST-REx-ID: 744 |

Optional interactions and suspicious behaviour facilitates trustful cooperation in prisoners dilemma
T. Priklopil, K. Chatterjee, M. Nowak, Journal of Theoretical Biology 433 (2017) 64–72.
View
| Files available
| DOI
| PubMed | Europe PMC
T. Priklopil, K. Chatterjee, M. Nowak, Journal of Theoretical Biology 433 (2017) 64–72.
2020 | Journal Article | IST-REx-ID: 7618 |

Quantum Hellinger distances revisited
J. Pitrik, D. Virosztek, Letters in Mathematical Physics 110 (2020) 2039–2052.
View
| DOI
| Download Preprint (ext.)
| arXiv
J. Pitrik, D. Virosztek, Letters in Mathematical Physics 110 (2020) 2039–2052.
2020 | Journal Article | IST-REx-ID: 7697 |

Directional auxin fluxes in plants by intramolecular domain‐domain co‐evolution of PIN auxin transporters
Y. Zhang, C. Hartinger, X. Wang, J. Friml, New Phytologist 227 (2020) 1406–1416.
View
| Files available
| DOI
| PubMed | Europe PMC
Y. Zhang, C. Hartinger, X. Wang, J. Friml, New Phytologist 227 (2020) 1406–1416.
2018 | Journal Article | IST-REx-ID: 1064 |

On the circle covering theorem by A.W. Goodman and R.E. Goodman
A. Akopyan, A. Balitskiy, M. Grigorev, Discrete & Computational Geometry 59 (2018) 1001–1009.
View
| Files available
| DOI
A. Akopyan, A. Balitskiy, M. Grigorev, Discrete & Computational Geometry 59 (2018) 1001–1009.
2017 | Journal Article | IST-REx-ID: 1076 |

Strong-field ionization via a high-order Coulomb-corrected strong-field approximation
M. Klaiber, J. Daněk, E. Yakaboylu, K. Hatsagortsyan, C. Keitel, Physical Review A - Atomic, Molecular, and Optical Physics 95 (2017).
View
| DOI
| Download Submitted Version (ext.)
M. Klaiber, J. Daněk, E. Yakaboylu, K. Hatsagortsyan, C. Keitel, Physical Review A - Atomic, Molecular, and Optical Physics 95 (2017).
2022 | Journal Article | IST-REx-ID: 10766 |

Tension-dependent stabilization of E-cadherin limits cell-cell contact expansion in zebrafish germ-layer progenitor cells
J. Slovakova, M.K. Sikora, F.N. Arslan, S. Caballero Mancebo, G. Krens, W. Kaufmann, J. Merrin, C.-P.J. Heisenberg, Proceedings of the National Academy of Sciences of the United States of America 119 (2022).
View
| Files available
| DOI
J. Slovakova, M.K. Sikora, F.N. Arslan, S. Caballero Mancebo, G. Krens, W. Kaufmann, J. Merrin, C.-P.J. Heisenberg, Proceedings of the National Academy of Sciences of the United States of America 119 (2022).
2017 | Journal Article | IST-REx-ID: 1078 |

Light sheet fluorescence microscopy of plant roots growing on the surface of a gel
D. von Wangenheim, R. Hauschild, J. Friml, Journal of Visualized Experiments JoVE 2017 (2017).
View
| Files available
| DOI
D. von Wangenheim, R. Hauschild, J. Friml, Journal of Visualized Experiments JoVE 2017 (2017).
2015 | Journal Article | IST-REx-ID: 10794 |

Bayesian inference for stochastic individual-based models of ecological systems: a pest control simulation study
F. Parise, J. Lygeros, J. Ruess, Frontiers in Environmental Science 3 (2015).
View
| Files available
| DOI
F. Parise, J. Lygeros, J. Ruess, Frontiers in Environmental Science 3 (2015).
2016 | Conference Paper | IST-REx-ID: 1105
Estimating nonlinear neural response functions using GP priors and Kronecker methods
C. Savin, G. Tkačik, in:, Neural Information Processing Systems, 2016, pp. 3610–3618.
View
| Download None (ext.)
C. Savin, G. Tkačik, in:, Neural Information Processing Systems, 2016, pp. 3610–3618.
2017 | Journal Article | IST-REx-ID: 1113 |

Hanani-Tutte for radial planarity
R. Fulek, M. Pelsmajer, M. Schaefer, Journal of Graph Algorithms and Applications 21 (2017) 135–154.
View
| Files available
| DOI
| arXiv
R. Fulek, M. Pelsmajer, M. Schaefer, Journal of Graph Algorithms and Applications 21 (2017) 135–154.
2017 | Journal Article | IST-REx-ID: 1133 |

Anomalous screening of quantum impurities by a neutral environment
E. Yakaboylu, M. Lemeshko, Physical Review Letters 118 (2017).
View
| DOI
| Download Submitted Version (ext.)
E. Yakaboylu, M. Lemeshko, Physical Review Letters 118 (2017).
2016 | Journal Article | IST-REx-ID: 1143 |

Ground states of large bosonic systems: The gross Pitaevskii limit revisited
P. Nam, N. Rougerie, R. Seiringer, Analysis and PDE 9 (2016) 459–485.
View
| DOI
| Download Preprint (ext.)
P. Nam, N. Rougerie, R. Seiringer, Analysis and PDE 9 (2016) 459–485.
2016 | Journal Article | IST-REx-ID: 1148
Adaptive moment closure for parameter inference of biochemical reaction networks
C. Schilling, S. Bogomolov, T.A. Henzinger, A. Podelski, J. Ruess, Biosystems 149 (2016) 15–25.
View
| Files available
| DOI
C. Schilling, S. Bogomolov, T.A. Henzinger, A. Podelski, J. Ruess, Biosystems 149 (2016) 15–25.
2017 | Journal Article | IST-REx-ID: 1162 |

Universal properties of high temperature superconductors from real space pairing t-J-U model and its quantitative comparison with experiment
J. Spałek, M. Zegrodnik, J. Kaczmarczyk, Physical Review B - Condensed Matter and Materials Physics 95 (2017).
View
| DOI
| Download Submitted Version (ext.)
J. Spałek, M. Zegrodnik, J. Kaczmarczyk, Physical Review B - Condensed Matter and Materials Physics 95 (2017).
2017 | Journal Article | IST-REx-ID: 1163
Unconventional superconductivity in generalized Hubbard model role of electron–hole symmetry breaking terms
M. Wysokiński, J. Kaczmarczyk, Journal of Physics: Condensed Matter 29 (2017).
View
| DOI
M. Wysokiński, J. Kaczmarczyk, Journal of Physics: Condensed Matter 29 (2017).
2016 | Conference Paper | IST-REx-ID: 1164 |

Hanani-Tutte for radial planarity II
R. Fulek, M. Pelsmajer, M. Schaefer, in:, Springer, 2016, pp. 468–481.
View
| Files available
| DOI
| Download Preprint (ext.)
| arXiv
R. Fulek, M. Pelsmajer, M. Schaefer, in:, Springer, 2016, pp. 468–481.
2016 | Conference Paper | IST-REx-ID: 1165 |

C-planarity of embedded cyclic c-graphs
R. Fulek, in:, Springer, 2016, pp. 94–106.
View
| Files available
| DOI
| Download Preprint (ext.)
R. Fulek, in:, Springer, 2016, pp. 94–106.
2015 | Journal Article | IST-REx-ID: 1538 |

Iterative experiment design guides the characterization of a light-inducible gene expression circuit
J. Ruess, F. Parise, A. Milias Argeitis, M. Khammash, J. Lygeros, PNAS 112 (2015) 8148–8153.
View
| DOI
| Download Submitted Version (ext.)
| PubMed | Europe PMC
J. Ruess, F. Parise, A. Milias Argeitis, M. Khammash, J. Lygeros, PNAS 112 (2015) 8148–8153.
2015 | Journal Article | IST-REx-ID: 1539 |

Minimal moment equations for stochastic models of biochemical reaction networks with partially finite state space
J. Ruess, Journal of Chemical Physics 143 (2015).
View
| Files available
| DOI
J. Ruess, Journal of Chemical Physics 143 (2015).
2016 | Journal Article | IST-REx-ID: 1545 |

Diagonalization of bosonic quadratic Hamiltonians by Bogoliubov transformations
P. Nam, M.M. Napiórkowski, J. Solovej, Journal of Functional Analysis 270 (2016) 4340–4368.
View
| DOI
| Download Submitted Version (ext.)
P. Nam, M.M. Napiórkowski, J. Solovej, Journal of Functional Analysis 270 (2016) 4340–4368.
2015 | Journal Article | IST-REx-ID: 1551 |

Host–pathogen coevolution: The selective advantage of Bacillus thuringiensis virulence and its cry toxin genes
L. El Masri, A. Branca, A. Sheppard, A. Papkou, D. Laehnemann, P. Guenther, S. Prahl, M. Saebelfeld, J. Hollensteiner, H. Liesegang, E. Brzuszkiewicz, R. Daniel, N. Michiels, R. Schulte, J. Kurtz, P. Rosenstiel, A. Telschow, E. Bornberg Bauer, H. Schulenburg, PLoS Biology 13 (2015) 1–30.
View
| Files available
| DOI
L. El Masri, A. Branca, A. Sheppard, A. Papkou, D. Laehnemann, P. Guenther, S. Prahl, M. Saebelfeld, J. Hollensteiner, H. Liesegang, E. Brzuszkiewicz, R. Daniel, N. Michiels, R. Schulte, J. Kurtz, P. Rosenstiel, A. Telschow, E. Bornberg Bauer, H. Schulenburg, PLoS Biology 13 (2015) 1–30.
2015 | Journal Article | IST-REx-ID: 1564 |

Editorial: Emergent neural computation from the interaction of different forms of plasticity
M. Gilson, C. Savin, F. Zenke, Frontiers in Computational Neuroscience 9 (2015).
View
| Files available
| DOI
M. Gilson, C. Savin, F. Zenke, Frontiers in Computational Neuroscience 9 (2015).
2018 | Journal Article | IST-REx-ID: 157 |

Evolution of cooperation in stochastic games
C. Hilbe, Š. Šimsa, K. Chatterjee, M. Nowak, Nature 559 (2018) 246–249.
View
| Files available
| DOI
C. Hilbe, Š. Šimsa, K. Chatterjee, M. Nowak, Nature 559 (2018) 246–249.
2015 | Journal Article | IST-REx-ID: 1570 |

Novel plasticity rule can explain the development of sensorimotor intelligence
R. Der, G.S. Martius, PNAS 112 (2015) E6224–E6232.
View
| DOI
| Download Submitted Version (ext.)
| PubMed | Europe PMC
R. Der, G.S. Martius, PNAS 112 (2015) E6224–E6232.
2015 | Journal Article | IST-REx-ID: 1587 |

Quantum interference shifts in laser spectroscopy with elliptical polarization
P. Amaro, F. Fratini, L. Safari, A. Antognini, P. Indelicato, R. Pohl, J. Santos, Physical Review A - Atomic, Molecular, and Optical Physics 92 (2015).
View
| DOI
| Download Preprint (ext.)
| arXiv
P. Amaro, F. Fratini, L. Safari, A. Antognini, P. Indelicato, R. Pohl, J. Santos, Physical Review A - Atomic, Molecular, and Optical Physics 92 (2015).
2015 | Conference Paper | IST-REx-ID: 1594
Controller synthesis for MDPs and frequency LTL\GU
V. Forejt, J. Krčál, J. Kretinsky, in:, Springer, 2015, pp. 162–177.
View
| DOI
V. Forejt, J. Krčál, J. Kretinsky, in:, Springer, 2015, pp. 162–177.
2015 | Conference Paper | IST-REx-ID: 1595 |

Hanani-Tutte for radial planarity
R. Fulek, M. Pelsmajer, M. Schaefer, in:, Springer, 2015, pp. 99–110.
View
| Files available
| DOI
R. Fulek, M. Pelsmajer, M. Schaefer, in:, Springer, 2015, pp. 99–110.
2015 | Book Chapter | IST-REx-ID: 1596 |

Vertical visibility among parallel polygons in three dimensions
R. Fulek, R. Radoičić, in:, Graph Drawing and Network Visualization, Springer Nature, 2015, pp. 373–379.
View
| Files available
| DOI
R. Fulek, R. Radoičić, in:, Graph Drawing and Network Visualization, Springer Nature, 2015, pp. 373–379.
2015 | Conference Paper | IST-REx-ID: 1601 |

The Hanoi omega-automata format
T. Babiak, F. Blahoudek, A. Duret Lutz, J. Klein, J. Kretinsky, D. Mueller, D. Parker, J. Strejček, in:, Springer, 2015, pp. 479–486.
View
| Files available
| DOI
T. Babiak, F. Blahoudek, A. Duret Lutz, J. Klein, J. Kretinsky, D. Mueller, D. Parker, J. Strejček, in:, Springer, 2015, pp. 479–486.
2015 | Conference Paper | IST-REx-ID: 1603 |

Counterexample explanation by learning small strategies in Markov decision processes
T. Brázdil, K. Chatterjee, M. Chmelik, A. Fellner, J. Kretinsky, in:, Springer, 2015, pp. 158–177.
View
| Files available
| DOI
| Download Preprint (ext.)
T. Brázdil, K. Chatterjee, M. Chmelik, A. Fellner, J. Kretinsky, in:, Springer, 2015, pp. 158–177.
2016 | Journal Article | IST-REx-ID: 1608 |

Anderson transition at 2 dimensional growth rate on antitrees and spectral theory for operators with one propagating channel
C. Sadel, Annales Henri Poincare 17 (2016) 1631–1675.
View
| DOI
| Download Preprint (ext.)
C. Sadel, Annales Henri Poincare 17 (2016) 1631–1675.
2018 | Journal Article | IST-REx-ID: 161 |

Statistical mechanics for metabolic networks during steady state growth
D. De Martino, A.A. Mc, T. Bergmiller, C.C. Guet, G. Tkačik, Nature Communications 9 (2018).
View
| Files available
| DOI
D. De Martino, A.A. Mc, T. Bergmiller, C.C. Guet, G. Tkačik, Nature Communications 9 (2018).
2016 | Journal Article | IST-REx-ID: 1622 |

Fractional Hardy–Lieb–Thirring and related Inequalities for interacting systems
D. Lundholm, P. Nam, F. Portmann, Archive for Rational Mechanics and Analysis 219 (2016) 1343–1382.
View
| DOI
| Download Submitted Version (ext.)
D. Lundholm, P. Nam, F. Portmann, Archive for Rational Mechanics and Analysis 219 (2016) 1343–1382.
2015 | Journal Article | IST-REx-ID: 1642 |

Clustered planarity testing revisited
R. Fulek, J. Kynčl, I. Malinovič, D. Pálvölgyi, Electronic Journal of Combinatorics 22 (2015).
View
| Files available
| DOI
| arXiv
R. Fulek, J. Kynčl, I. Malinovič, D. Pálvölgyi, Electronic Journal of Combinatorics 22 (2015).
2015 | Journal Article | IST-REx-ID: 1655 |

Quantifying emergent behavior of autonomous robots
G.S. Martius, E. Olbrich, Entropy 17 (2015) 7266–7297.
View
| Files available
| DOI
G.S. Martius, E. Olbrich, Entropy 17 (2015) 7266–7297.
2015 | Conference Paper | IST-REx-ID: 1657
Unifying two views on multiple mean-payoff objectives in Markov decision processes
K. Chatterjee, Z. Komárková, J. Kretinsky, (2015) 244–256.
View
| Files available
| DOI
K. Chatterjee, Z. Komárková, J. Kretinsky, (2015) 244–256.
2015 | Conference Paper | IST-REx-ID: 1658
Adaptive moment closure for parameter inference of biochemical reaction networks
S. Bogomolov, T.A. Henzinger, A. Podelski, J. Ruess, C. Schilling, 9308 (2015) 77–89.
View
| Files available
| DOI
S. Bogomolov, T.A. Henzinger, A. Podelski, J. Ruess, C. Schilling, 9308 (2015) 77–89.
2015 | Conference Paper | IST-REx-ID: 1660 |

Long-run average behaviour of probabilistic vector addition systems
T. Brázdil, S. Kiefer, A. Kučera, P. Novotný, in:, IEEE, 2015, pp. 44–55.
View
| DOI
| Download Preprint (ext.)
T. Brázdil, S. Kiefer, A. Kučera, P. Novotný, in:, IEEE, 2015, pp. 44–55.
2015 | Journal Article | IST-REx-ID: 1663
Complex regulation of CREB-binding protein by homeodomain-interacting protein kinase 2
K. Kovács, M. Steinmann, O. Halfon, P. Magistretti, J. Cardinaux, Cellular Signalling 27 (2015) 2252–2260.
View
| Files available
| DOI
K. Kovács, M. Steinmann, O. Halfon, P. Magistretti, J. Cardinaux, Cellular Signalling 27 (2015) 2252–2260.
2015 | Conference Paper | IST-REx-ID: 1667 |

Optimizing performance of continuous-time stochastic systems using timeout synthesis
T. Brázdil, L. Korenčiak, J. Krčál, P. Novotný, V. Řehák, 9259 (2015) 141–159.
View
| DOI
| Download Preprint (ext.)
T. Brázdil, L. Korenčiak, J. Krčál, P. Novotný, V. Řehák, 9259 (2015) 141–159.
2015 | Journal Article | IST-REx-ID: 1681 |

Evolution of decisions in population games with sequentially searching individuals
T. Priklopil, K. Chatterjee, Games 6 (2015) 413–437.
View
| Files available
| DOI
T. Priklopil, K. Chatterjee, Games 6 (2015) 413–437.
2015 | Conference Paper | IST-REx-ID: 1685 |

A fixed parameter tractable approximation scheme for the optimal cut graph of a surface
V. Cohen Addad, A.N. de Mesmay, in:, Springer, 2015, pp. 386–398.
View
| DOI
| Download Preprint (ext.)
V. Cohen Addad, A.N. de Mesmay, in:, Springer, 2015, pp. 386–398.
2015 | Conference Paper | IST-REx-ID: 1689 |

Temporal logic control for stochastic linear systems using abstraction refinement of probabilistic games
M. Svoreňová, J. Kretinsky, M. Chmelik, K. Chatterjee, I. Cěrná, C. Belta, in:, Proceedings of the 18th International Conference on Hybrid Systems: Computation and Control, ACM, 2015, pp. 259–268.
View
| Files available
| DOI
| Download Preprint (ext.)
M. Svoreňová, J. Kretinsky, M. Chmelik, K. Chatterjee, I. Cěrná, C. Belta, in:, Proceedings of the 18th International Conference on Hybrid Systems: Computation and Control, ACM, 2015, pp. 259–268.
2015 | Journal Article | IST-REx-ID: 1693 |

Quantum interference effects in laser spectroscopy of muonic hydrogen, deuterium, and helium-3
P. Amaro, B. Franke, J. Krauth, M. Diepold, F. Fratini, L. Safari, J. Machado, A. Antognini, F. Kottmann, P. Indelicato, R. Pohl, J. Santos, Physical Review A 92 (2015).
View
| DOI
| Download Preprint (ext.)
P. Amaro, B. Franke, J. Krauth, M. Diepold, F. Fratini, L. Safari, J. Machado, A. Antognini, F. Kottmann, P. Indelicato, R. Pohl, J. Santos, Physical Review A 92 (2015).
2015 | Journal Article | IST-REx-ID: 1695 |

Evaluation techniques for Gutzwiller wave functions in finite dimensions
J. Kaczmarczyk, T. Schickling, J. Bünemann, Physica Status Solidi (B): Basic Solid State Physics 252 (2015) 2059–2071.
View
| DOI
| Download Preprint (ext.)
J. Kaczmarczyk, T. Schickling, J. Bünemann, Physica Status Solidi (B): Basic Solid State Physics 252 (2015) 2059–2071.
2015 | Journal Article | IST-REx-ID: 1696 |

Gutzwiller wave function solution for Anderson lattice model: Emerging universal regimes of heavy quasiparticle states
M. Wysokiński, J. Kaczmarczyk, J. Spałek, Physical Review B 92 (2015).
View
| DOI
| Download Preprint (ext.)
M. Wysokiński, J. Kaczmarczyk, J. Spałek, Physical Review B 92 (2015).
2015 | Journal Article | IST-REx-ID: 1710 |

Minimal resistance of curves under the single impact assumption
A. Akopyan, A. Plakhov, Society for Industrial and Applied Mathematics 47 (2015) 2754–2769.
View
| DOI
| Download Preprint (ext.)
A. Akopyan, A. Plakhov, Society for Industrial and Applied Mathematics 47 (2015) 2754–2769.
2015 | Journal Article | IST-REx-ID: 1811 |

Analytical evaluation of atomic form factors: Application to Rayleigh scattering
L. Safari, J. Santos, P. Amaro, K. Jänkälä, F. Fratini, Journal of Mathematical Physics 56 (2015).
View
| DOI
| Download Preprint (ext.)
L. Safari, J. Santos, P. Amaro, K. Jänkälä, F. Fratini, Journal of Mathematical Physics 56 (2015).
2015 | Journal Article | IST-REx-ID: 1827 |

Evolution of bow-tie architectures in biology
T. Friedlander, A. Mayo, T. Tlusty, U. Alon, PLoS Computational Biology 11 (2015).
View
| Files available
| DOI
T. Friedlander, A. Mayo, T. Tlusty, U. Alon, PLoS Computational Biology 11 (2015).
2015 | Journal Article | IST-REx-ID: 1828 |

Invariant measures of genetic recombination process
A. Akopyan, S. Pirogov, A. Rybko, Journal of Statistical Physics 160 (2015) 163–167.
View
| DOI
| Download Preprint (ext.)
A. Akopyan, S. Pirogov, A. Rybko, Journal of Statistical Physics 160 (2015) 163–167.
2015 | Conference Paper | IST-REx-ID: 1835 |

Model checking gene regulatory networks
M. Giacobbe, C.C. Guet, A. Gupta, T.A. Henzinger, T. Paixao, T. Petrov, 9035 (2015) 469–483.
View
| Files available
| DOI
| Download Preprint (ext.)
M. Giacobbe, C.C. Guet, A. Gupta, T.A. Henzinger, T. Paixao, T. Petrov, 9035 (2015) 469–483.
2014 | Journal Article | IST-REx-ID: 1926 |

Absolutely continuous spectrum for random Schrödinger operators on the Fibonacci and similar Tree-strips
C. Sadel, Mathematical Physics, Analysis and Geometry 17 (2014) 409–440.
View
| DOI
| Download Preprint (ext.)
| arXiv
C. Sadel, Mathematical Physics, Analysis and Geometry 17 (2014) 409–440.