ISTplus - Postdoctoral Fellowships

Hydrodynamics for the partial exclusion process in random environment
S. Floreani, F. Redig, F. Sau, Stochastic Processes and Their Applications 142 (2021) 124–158.

Half and quarter metals in rhombohedral trilayer graphene
H. Zhou, T. Xie, A. Ghazaryan, T. Holder, J.R. Ehrets, E.M. Spanton, T. Taniguchi, K. Watanabe, E. Berg, M. Serbyn, A.F. Young, Nature (2021).

Defect engineering in solution-processed polycrystalline SnSe leads to high thermoelectric performance
Y. Liu, M. Calcabrini, Y. Yu, S. Lee, C. Chang, J. David, T. Ghosh, M.C. Spadaro, C. Xie, O. Cojocaru-Mirédin, J. Arbiol, M. Ibáñez, ACS Nano 16 (2022) 78–88.

Decomposing permutation automata
I.R. Jecker, N. Mazzocchi, P. Wolf, in:, 32nd International Conference on Concurrency Theory, Schloss Dagstuhl - Leibniz Zentrum für Informatik, 2021.

A Ramsey theorem for finite monoids
I.R. Jecker, in:, 38th International Symposium on Theoretical Aspects of Computer Science, Schloss Dagstuhl - Leibniz Zentrum für Informatik, 2021.

A bit of nondeterminism makes pushdown automata expressive and succinct
S. Guha, I.R. Jecker, K. Lehtinen, M. Zimmermann, in:, 46th International Symposium on Mathematical Foundations of Computer Science, Schloss Dagstuhl - Leibniz Zentrum für Informatik, 2021.

Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling
M. Artan, S. Barratt, S.M. Flynn, F. Begum, M. Skehel, A. Nicolas, M. de Bono, Journal of Biological Chemistry 297 (2021).

Neuronal calmodulin levels are controlled by CAMTA transcription factors
T. Vuong-Brender, S. Flynn, Y. Vallis, M. de Bono, ELife 10 (2021).

The importance of surface adsorbates in solution‐processed thermoelectric materials: The case of SnSe
Y. Liu, M. Calcabrini, Y. Yu, A. Genç, C. Chang, T. Costanzo, T. Kleinhanns, S. Lee, J. Llorca, O. Cojocaru‐Mirédin, M. Ibáñez, Advanced Materials 33 (2021).

Structure and assembly of the mammalian mitochondrial supercomplex CIII₂CIV
I. Vercellino, L.A. Sazanov, Nature 598 (2021) 364–367.

Anderson localization of composite particles
F. Suzuki, M. Lemeshko, W.H. Zurek, R.V. Krems, Physical Review Letters 127 (2021).

Into the unknown: active monitoring of neural networks
A. Lukina, C. Schilling, T.A. Henzinger, in:, 21st International Conference on Runtime Verification, Springer Nature, Cham, 2021, pp. 42–61.

On eigenvector statistics in the spherical and truncated unitary ensembles
G. Dubach, Electronic Journal of Probability 26 (2021).

PbS–Pb–CuxS composites for thermoelectric application
M. Li, Y. Liu, Y. Zhang, X. Han, K. Xiao, M. Nabahat, J. Arbiol, J. Llorca, M. Ibáñez, A. Cabot, ACS Applied Materials and Interfaces 13 (2021) 51373–51382.

Theory of branching morphogenesis by local interactions and global guidance
M.C. Ucar, D. Kamenev, K. Sunadome, D.C. Fachet, F. Lallemend, I. Adameyko, S. Hadjab, E.B. Hannezo, Nature Communications 12 (2021).

Generation of spin currents by a temperature gradient in a two-terminal device
R.E. Barfknecht, A. Foerster, N.T. Zinner, A. Volosniev, Communications Physics 4 (2021).

Dissecting organismal morphogenesis by bridging genetics and biophysics
N. Mishra, C.-P.J. Heisenberg, Annual Review of Genetics 55 (2021) 209–233.

Asynchronous decentralized SGD with quantized and local updates
G. Nadiradze, A. Sabour, P. Davies, S. Li, D.-A. Alistarh, in:, 35th Conference on Neural Information Processing Systems, NeurIPS, 2021.

Elastic consistency: A practical consistency model for distributed stochastic gradient descent
G. Nadiradze, I. Markov, B. Chatterjee, V. Kungurtsev, D.-A. Alistarh, in:, Proceedings of the AAAI Conference on Artificial Intelligence, 2021, pp. 9037–9045.

Unconventional superconductivity in systems with annular Fermi surfaces: Application to rhombohedral trilayer graphene
A. Ghazaryan, T. Holder, M. Serbyn, E. Berg, Physical Review Letters 127 (2021).

The Dean-Kawasaki equation and the structure of density fluctuations in systems of diffusing particles
F. Cornalba, J.L. Fischer, ArXiv (n.d.).

Room temperature aqueous-based synthesis of copper-doped lead sulfide nanoparticles for thermoelectric application
M. Li, Y. Liu, Y. Zhang, C. Chang, T. Zhang, D. Yang, K. Xiao, J. Arbiol, M. Ibáñez, A. Cabot, Chemical Engineering Journal 433 (2022).

Higher-order hydrodynamics and equilibrium fluctuations of interacting particle systems
J.P. Chen, F. Sau, Markov Processes And Related Fields 27 (2021) 339–380.

Shadow surface states in topological Kondo insulators
A. Ghazaryan, E.M. Nica, O. Erten, P. Ghaemi, New Journal of Physics 23 (2021).

On the complexity of intersection non-emptiness for star-free language classes
E. Arrighi, H. Fernau, S. Hoffmann, M. Holzer, I.R. Jecker, M. De Oliveira Oliveira, P. Wolf, in:, 41st IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science, Schloss Dagstuhl - Leibniz Zentrum für Informatik, 2021.

Phase transition to turbulence in spatially extended shear flows
L. Klotz, G.M. Lemoult, K. Avila, B. Hof, Physical Review Letters 128 (2022).

Where do mistakes lead? A survey of games with incompetent players
T. Graham, M. Kleshnina, J.A. Filar, Dynamic Games and Applications (2022).

Orthogonal polynomial duality of boundary driven particle systems and non-equilibrium correlations
S. Floreani, F. Redig, F. Sau, Annales de l’institut Henri Poincare (B) Probability and Statistics 58 (2022) 220–247.

Alpha rhythm induces attenuation-amplification dynamics in neural activity cascades
F. Lombardi, H.J. Herrmann, L. Parrino, D. Plenz, S. Scarpetta, A.E. Vaudano, L. de Arcangelis, O. Shriki, BioRxiv (2022).

Impurity with a resonance in the vicinity of the Fermi energy
M. Maslov, M. Lemeshko, A. Volosniev, Physical Review Research 4 (2022).

Enhanced thermoelectric performance of n-type Bi2Se3 nanosheets through Sn doping
M. Li, Y. Zhang, T. Zhang, Y. Zuo, K. Xiao, J. Arbiol, J. Llorca, Y. Liu, A. Cabot, Nanomaterials 11 (2021).

Detecting induced p±ip pairing at the Al-InAs interface with a quantum microwave circuit
D.T. Phan, J.L. Senior, A. Ghazaryan, M. Hatefipour, W.M. Strickland, J. Shabani, M. Serbyn, A.P. Higginbotham, Physical Review Letters 128 (2022).

Dynamics of hole singlet-triplet qubits with large g-factor differences
D. Jirovec, P.M. Mutter, A.C. Hofmann, A. Crippa, M. Rychetsky, D.L. Craig, J. Kukucka, F. Martins, A. Ballabio, N. Ares, D. Chrastina, G. Isella, G. Burkard, G. Katsaros, Physical Review Letters 128 (2022).

Quantifying the coexistence of neuronal oscillations and avalanches
F. Lombardi, S. Pepic, O. Shriki, G. Tkačik, D. De Martino, (n.d.).

Quantum-enabled operation of a microwave-optical interface
R. Sahu, W.J. Hease, A.R. Rueda Sanchez, G.M. Arnold, L. Qiu, J.M. Fink, Nature Communications 13 (2022).

PaReBrick: PArallel REarrangements and BReaks identification toolkit
A. Zabelkin, Y. Yakovleva, O. Bochkareva, N. Alexeev, Bioinformatics 38 (2022) 357–363.

Approximating the bundled crossing number
A.M. Arroyo Guevara, S. Felsner, in:, WALCOM 2022: Algorithms and Computation, Springer Nature, 2022, pp. 383–395.

Entanglement and precession in two-dimensional dynamical quantum phase transitions
S. De Nicola, A. Michailidis, M. Serbyn, Physical Review B 105 (2022).

Chromosome-encoded IpaH ubiquitin ligases indicate non-human enteroinvasive Escherichia
N. Dranenko, M. Tutukina, M. Gelfand, F. Kondrashov, O. Bochkareva, Scientific Reports 12 (2022).

A cautionary tale: Burning the medial axis is unstable
E. Chambers, C.D. Fillmore, E.R. Stephenson, M. Wintraecken, in:, X. Goaoc, M. Kerber (Eds.), 38th International Symposium on Computational Geometry, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2022, p. 66:1-66:9.

Asynchronous optimization methods for efficient training of deep neural networks with guarantees
V. Kungurtsev, M. Egan, B. Chatterjee, D.-A. Alistarh, in:, 35th AAAI Conference on Artificial Intelligence, AAAI 2021, AAAI Press, 2021, pp. 8209–8216.

Proteomic Analysis of C. Elegans Neurons Using TurboID-Based Proximity Labeling
M. Artan, M. de Bono, in:, D. Yamamoto (Ed.), Behavioral Neurogenetics, Springer Nature, New York, 2022, pp. 277–294.

Distributed principal component analysis with limited communication
F. Alimisis, P. Davies, B. Vandereycken, D.-A. Alistarh, in:, Advances in Neural Information Processing Systems - 35th Conference on Neural Information Processing Systems, Neural Information Processing Systems Foundation, 2021, pp. 2823–2834.

Contravariant pairings between standard Whittaker modules and Verma modules
A. Brown, A. Romanov, Journal of Algebra 609 (2022) 145–179.

Artificial atoms from cold bosons in one dimension
F. Brauneis, T.G. Backert, S.I. Mistakidis, M. Lemeshko, H.W. Hammer, A. Volosniev, New Journal of Physics 24 (2022).

Surface functionalization of surfactant-free particles: A strategy to tailor the properties of nanocomposites for enhanced thermoelectric performance
C. Chang, Y. Liu, S. Lee, M. Spadaro, K.M. Koskela, T. Kleinhanns, T. Costanzo, J. Arbiol, R.L. Brutchey, M. Ibáñez, Angewandte Chemie - International Edition 61 (2022).

Low-energy spectrum and dynamics of the weakly interacting Bose gas
L. Bossmann, Journal of Mathematical Physics 63 (2022).

Large deviation estimates for weakly interacting bosons
S.A.E. Rademacher, R. Seiringer, Journal of Statistical Physics 188 (2022).

Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans
M. Artan, M. Hartl, W. Chen, M. de Bono, Journal of Biological Chemistry 298 (2022).

Dependent random variables in quantum dynamics
S.A.E. Rademacher, Journal of Mathematical Physics 63 (2022).

Curvature-dimension conditions for symmetric quantum Markov semigroups
M. Wirth, H. Zhang, Annales Henri Poincare (2022).

Phenotypic and genetic spectrum of ATP6V1A encephalopathy: A disorder of lysosomal homeostasis
Guerrini R, Mei D, Szigeti MK, Pepe S, Koenig MK, Von Allmen G, Cho MT, McDonald K, Baker J, Bhambhani V, Powis Z, Rodan L, Nabbout R, Barcia G, Rosenfeld JA, Bacino CA, Mignot C, Power LH, Harris CJ, Marjanovic D, Møller RS, Hammer TB, Keski Filppula R, Vieira P, Hildebrandt C, Sacharow S, Maragliano L, Benfenati F, Lachlan K, Benneche A, Petit F, de Sainte Agathe JM, Hallinan B, Si Y, Wentzensen IM, Zou F, Narayanan V, Matsumoto N, Boncristiano A, la Marca G, Kato M, Anderson K, Barba C, Sturiale L, Garozzo D, Bei R, Masuelli L, Conti V, Novarino G, Fassio A. 2022. Phenotypic and genetic spectrum of ATP6V1A encephalopathy: A disorder of lysosomal homeostasis. Brain. 145(8), 2687–2703.

Evolution of electronic and magnetic properties of Sr₂IrO₄ under strain
E. Paerschke, W.-C. Chen, R. Ray, C.-C. Chen, Npj Quantum Materials 7 (2022).

Norms of certain functions of a distinguished Laplacian on the ax + b groups
R. Akylzhanov, Y. Kuznetsova, M. Ruzhansky, H. Zhang, Mathematische Zeitschrift 302 (2022) 2327–2352.

Local criteria for triangulating general manifolds
J.-D. Boissonnat, R. Dyer, A. Ghosh, M. Wintraecken, Discrete & Computational Geometry 69 (2023) 156–191.

Symmetric inclusion process with slow boundary: Hydrodynamics and hydrostatics
C. Franceschini, P. Gonçalves, F. Sau, Bernoulli 28 (2022) 1340–1381.

Efficient coding theory of dynamic attentional modulation
W.F. Mlynarski, G. Tkačik, PLoS Biology 20 (2022) e3001889.

A tool for mapping microglial morphology, morphOMICs, reveals brain-region and sex-dependent phenotypes
G. Colombo, R.J. Cubero, L. Kanari, A. Venturino, R. Schulz, M. Scolamiero, J. Agerberg, H. Mathys, L.-H. Tsai, W. Chachólski, K. Hess, S. Siegert, Nature Neuroscience 25 (2022) 1379–1393.

Criticality of neuronal avalanches in human sleep and their relationship with sleep macro- and micro-architecture
S. Scarpetta, N. Morrisi, C. Mutti, N. Azzi, I. Trippi, R. Ciliento, I. Apicella, G. Messuti, M. Angiolelli, F. Lombardi, L. Parrino, A.E. Vaudano, BioRxiv (n.d.).

Mixing layer instability and vorticity amplification in a creeping viscoelastic flow
A. Varshney, V. Steinberg, Physical Review Fluids 3 (2018).

Drag enhancement and drag reduction in viscoelastic flow
A. Varshney, V. Steinberg, Physical Review Fluids 3 (2018).

Model of bacterial toxin-dependent pathogenesis explains infective dose
J. Rybicki, E. Kisdi, J. Anttila, PNAS 115 (2018) 10690–10695.

Evolving inversions
R. Faria, K. Johannesson, R.K. Butlin, A.M. Westram, Trends in Ecology and Evolution 34 (2019) 239–248.

Experiments on a jet in a crossflow in the low-velocity-ratio regime
L. Klotz, K. Gumowski, J.E. Wesfreid, Journal of Fluid Mechanics 863 (2019) 386–406.

FlexMaps: Computational design of flat flexible shells for shaping 3D objects
L. Malomo, J. Perez Rodriguez, E. Iarussi, N. Pietroni, E. Miguel, P. Cignoni, B. Bickel, ACM Transactions on Graphics 37 (2018).

Elastic alfven waves in elastic turbulence
A. Varshney, V. Steinberg, Nature Communications 10 (2019).

Semantic fault localization and suspiciousness ranking
M. Christakis, M. Heizmann, M.N. Mansur, C. Schilling, V. Wüstholz, in:, 25th International Conference on Tools and Algorithms for the Construction and Analysis of Systems , Springer Nature, 2019, pp. 226–243.

JuliaReach: A toolbox for set-based reachability
S. Bogomolov, M. Forets, G. Frehse, K. Potomkin, C. Schilling, in:, Proceedings of the 22nd International Conference on Hybrid Systems: Computation and Control, ACM, 2019, pp. 39–44.

A practical guide to optimization in X10 expansion microscopy
S.M. Truckenbrodt, C.M. Sommer, S.O. Rizzoli, J.G. Danzl, Nature Protocols 14 (2019) 832–863.

Stokes flow analogous to viscous electron current in graphene
J. Mayzel, V. Steinberg, A. Varshney, Nature Communications 10 (2019).

Membership-based synthesis of linear hybrid automata
M. Garcia Soto, T.A. Henzinger, C. Schilling, L. Zeleznik, in:, 31st International Conference on Computer-Aided Verification, Springer, 2019, pp. 297–314.

Simplices modelled on spaces of constant curvature
R. Dyer, G. Vegter, M. Wintraecken, Journal of Computational Geometry 10 (2019) 223–256.

Tuning transport properties in thermoelectric nanocomposites through inorganic ligands and heterostructured building blocks
M. Ibáñez, A. Genç, R. Hasler, Y. Liu, O. Dobrozhan, O. Nazarenko, M. de la Mata, J. Arbiol, A. Cabot, M.V. Kovalenko, ACS Nano 13 (2019) 6572–6580.

Ligand-mediated band engineering in bottom-up assembled SnTe nanocomposites for thermoelectric energy conversion
M. Ibáñez, R. Hasler, A. Genç, Y. Liu, B. Kuster, M. Schuster, O. Dobrozhan, D. Cadavid, J. Arbiol, A. Cabot, M.V. Kovalenko, Journal of the American Chemical Society 141 (2019) 8025–8029.

The extrinsic nature of the Hausdorff distance of optimal triangulations of manifolds
G. Vegter, M. Wintraecken, in:, The 31st Canadian Conference in Computational Geometry, 2019, pp. 275–279.

Graphs with at most one crossing
A. Silva, A.M. Arroyo Guevara, B. Richter, O. Lee, Discrete Mathematics 342 (2019) 3201–3207.

The reach, metric distortion, geodesic convexity and the variation of tangent spaces
J.-D. Boissonnat, A. Lieutier, M. Wintraecken, Journal of Applied and Computational Topology 3 (2019) 29–58.

Byzantine approximate agreement on graphs
T. Nowak, J. Rybicki, in:, 33rd International Symposium on Distributed Computing, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2019, p. 29:1--29:17.

What can observational data reveal about metacommunity processes?
O. Ovaskainen, J. Rybicki, N. Abrego, Ecography 42 (2019) 1877–1886.

Does preprocessing help under congestion?
K.-T. Foerster, J. Korhonen, J. Rybicki, S. Schmid, in:, Proceedings of the 2019 ACM Symposium on Principles of Distributed Computing, ACM, 2019, pp. 259–261.

Self-stabilising Byzantine clock synchronisation is almost as easy as consensus
C. Lenzen, J. Rybicki, Journal of the ACM 66 (2019).

Non-equilibrium critical dynamics of bursts in θ and δ rhythms as fundamental characteristic of sleep and wake micro-architecture
J.W.J.L. Wang, F. Lombardi, X. Zhang, C. Anaclet, P.C. Ivanov, PLOS Computational Biology 15 (2019).

In-medium bound states of two bosonic impurities in a one-dimensional Fermi gas
D. Huber, H.-W. Hammer, A. Volosniev, Physical Review Research 1 (2019).

A persistent homology perspective to the link prediction problem
S. Bhatia, B. Chatterjee, D. Nathani, M. Kaul, in:, Complex Networks and Their Applications VIII, Springer Nature, 2019, pp. 27–39.

Habitat fragmentation and species diversity in competitive communities
J. Rybicki, N. Abrego, O. Ovaskainen, Ecology Letters 23 (2020) 506–517.

Extending simple drawings
A.M. Arroyo Guevara, M. Derka, I. Parada, in:, 27th International Symposium on Graph Drawing and Network Visualization, Springer Nature, 2019, pp. 230–243.

Multiple metrics of latitudinal patterns in insect pollination and herbivory for a tropical‐temperate congener pair
C. Baskett, L. Schroeder, M.G. Weber, D.W. Schemske, Ecological Monographs 90 (2020).

Supplementary data for "Programming temporal morphing of self-actuated shells"
R. Guseinov, (2019).

Multiscale relevance and informative encoding in neuronal spike trains
R.J. Cubero, M. Marsili, Y. Roudi, Journal of Computational Neuroscience 48 (2020) 85–102.

Genomic architecture of parallel ecological divergence: Beyond a single environmental contrast
H.E. Morales, R. Faria, K. Johannesson, T. Larsson, M. Panova, A.M. Westram, R.K. Butlin, Science Advances 5 (2019).

Influence of the ligand stripping on the transport properties of nanoparticle-based PbSe nanomaterials
D. Cadavid, S. Ortega, S. Illera, Y. Liu, M. Ibáñez, A. Shavel, Y. Zhang, M. Li, A.M. López, G. Noriega, O.J. Durá, M.A. López De La Torre, J.D. Prades, A. Cabot, ACS Applied Energy Materials 3 (2020) 2120–2129.

Long-range temporal correlations in the broadband resting state activity of the human brain revealed by neuronal avalanches
F. Lombardi, O. Shriki, H.J. Herrmann, L. de Arcangelis, Neurocomputing 461 (2021) 657–666.

Outside the box: Abstraction-based monitoring of neural networks
T.A. Henzinger, A. Lukina, C. Schilling, in:, 24th European Conference on Artificial Intelligence, IOS Press, 2020, pp. 2433–2440.

Higher order corrections to the mean-field description of the dynamics of interacting bosons
L. Bossmann, N. Pavlović, P. Pickl, A. Soffer, Journal of Statistical Physics 178 (2020) 1362–1396.

From Wigner-Yanase-Dyson conjecture to Carlen-Frank-Lieb conjecture
H. Zhang, Advances in Mathematics 365 (2020).

Coxeter triangulations have good quality
A. Choudhary, S. Kachanovich, M. Wintraecken, Mathematics in Computer Science 14 (2020) 141–176.

Statistical analysis and optimality of neural systems
W.F. Mlynarski, M. Hledik, T.R. Sokolowski, G. Tkačik, Neuron 109 (2021) 1227–1241.e5.

How spin-orbital entanglement depends on the spin-orbit coupling in a Mott insulator
D. Gotfryd, E. Paerschke, J. Chaloupka, A.M. Oles, K. Wohlfeld, Physical Review Research 2 (2020).

Central limit theorem for Bose gases interacting through singular potentials
S.A.E. Rademacher, Letters in Mathematical Physics 110 (2020) 2143–2174.

Non-equilibrium quantum spin dynamics from classical stochastic processes
S. De Nicola, B. Doyon, M.J. Bhaseen, Journal of Statistical Mechanics: Theory and Experiment 2020 (2020).