Runaway transition in irreversible polymer condensation with cyclization

Panoukidou M, Weir S, Sorichetti V, Fosado YG, Lenz M, Michieletto D. 2024. Runaway transition in irreversible polymer condensation with cyclization. Physical Review Research. 6(2), 023189.

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Journal Article | Published | English

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Author
Panoukidou, Maria; Weir, Simon; Sorichetti, ValerioISTA ; Fosado, Yair Gutierrez; Lenz, Martin; Michieletto, Davide
Department
Abstract
The process of polymer condensation, i.e., the formation of bonds between reactive end groups, is ubiquitous in both industry and biology. Here we study generic systems undergoing polymer condensation in competition with cyclization. Using a generalized Smoluchowski theory, molecular dynamics simulations and experiments with DNA and ATP-consuming T4 ligase, we find that this system displays a transition, from a ring-dominated regime with finite-length chains at infinite time to a linear-polymers-dominated one with chains that keep growing in time. Finally, we show that fluids prepared close to the transition may have widely different compositions and rheology at large condensation times.
Publishing Year
Date Published
2024-05-01
Journal Title
Physical Review Research
Publisher
American Physical Society
Acknowledgement
D.M. acknowledges the support of the Royal Society via a University Research Fellowship. This project has received support from the European Research Council (ERC) under the European Union’s Horizon 2020 Research and Innovation Program (Grant Agreement No. 947918 to D.M. and No. 677532 to M.L.). The authors acknowledge insightful discussions with Daan Noordermeer and Antonio Valdes, who also kindly gifted us with the 1288 plasmid.
Volume
6
Issue
2
Article Number
023189
ISSN
IST-REx-ID

Cite this

Panoukidou M, Weir S, Sorichetti V, Fosado YG, Lenz M, Michieletto D. Runaway transition in irreversible polymer condensation with cyclization. Physical Review Research. 2024;6(2). doi:10.1103/PhysRevResearch.6.023189
Panoukidou, M., Weir, S., Sorichetti, V., Fosado, Y. G., Lenz, M., & Michieletto, D. (2024). Runaway transition in irreversible polymer condensation with cyclization. Physical Review Research. American Physical Society. https://doi.org/10.1103/PhysRevResearch.6.023189
Panoukidou, Maria, Simon Weir, Valerio Sorichetti, Yair Gutierrez Fosado, Martin Lenz, and Davide Michieletto. “Runaway Transition in Irreversible Polymer Condensation with Cyclization.” Physical Review Research. American Physical Society, 2024. https://doi.org/10.1103/PhysRevResearch.6.023189.
M. Panoukidou, S. Weir, V. Sorichetti, Y. G. Fosado, M. Lenz, and D. Michieletto, “Runaway transition in irreversible polymer condensation with cyclization,” Physical Review Research, vol. 6, no. 2. American Physical Society, 2024.
Panoukidou M, Weir S, Sorichetti V, Fosado YG, Lenz M, Michieletto D. 2024. Runaway transition in irreversible polymer condensation with cyclization. Physical Review Research. 6(2), 023189.
Panoukidou, Maria, et al. “Runaway Transition in Irreversible Polymer Condensation with Cyclization.” Physical Review Research, vol. 6, no. 2, 023189, American Physical Society, 2024, doi:10.1103/PhysRevResearch.6.023189.
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