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Calin Guet

Iva Atanaskovic

Athina Diakogianni

Nathalie Gruber

Ekaterina Krasnopeeva

Antoine Loussouarn

Stepan Ovchinnikov

Pavel Payne

Roderich Römhild

Bryan Wu

Puzhen Xia

Tobias Bergmiller

Remy Chait

Rok Grah

Claudia Igler

Kirti Jain

Stephanie Kainrath

Mato Lagator

Moritz Lang

Maria Mateescu

Anna Nagy-Staron

Nela Nikolic

Tiago Paixao

Tatjana Petrov

Maros Pleska

Isabella Tomanek

Nikola Zarevski



137 Publications

2016 | Published | Journal Article | IST-REx-ID: 1359 | OA
T. Paixao and N. H. Barton, “The effect of gene interactions on the long-term response to selection,” PNAS, vol. 113, no. 16. National Academy of Sciences, pp. 4422–4427, 2016.
[Published Version] View | DOI | Download Published Version (ext.) | WoS | PubMed | Europe PMC
 
2016 | Published | Journal Article | IST-REx-ID: 1427 | OA
M. Lagator, C. Igler, A. Moreno, C. C. Guet, and J. P. Bollback, “Epistatic interactions in the arabinose cis-regulatory element,” Molecular Biology and Evolution, vol. 33, no. 3. Oxford University Press, pp. 761–769, 2016.
[Published Version] View | Files available | DOI | WoS
 
2016 | Published | Conference Paper | IST-REx-ID: 1524 | OA
A. Beica, C. C. Guet, and T. Petrov, “Efficient reduction of kappa models by static inspection of the rule-set,” presented at the HSB: Hybrid Systems Biology, Madrid, Spain, 2016, vol. 9271, pp. 173–191.
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 
2016 | Published | Journal Article | IST-REx-ID: 5749 | OA
S. Wielgoss, T. Bergmiller, A. M. Bischofberger, and A. R. Hall, “Adaptation to parasites and costs of parasite resistance in mutator and nonmutator bacteria,” Molecular Biology and Evolution, vol. 33, no. 3. Oxford University Press, pp. 770–782, 2016.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2016 | Published | Journal Article | IST-REx-ID: 1008
R. Gnügge, L. Dharmarajan, M. Lang, and J. Stelling, “An orthogonal permease–inducer–repressor feedback loop shows bistability,” ACS Synthetic Biology, vol. 5, no. 10. American Chemical Society, pp. 1098–1107, 2016.
View | DOI | WoS
 
2016 | Research Data Reference | IST-REx-ID: 9873
A. Boehm, M. Arnoldini, T. Bergmiller, T. Röösli, C. Bigosch, and M. Ackermann, “Quantification of the growth rate reduction as a consequence of age-specific mortality.” Public Library of Science, 2016.
[Published Version] View | Files available | DOI
 
2016 | Published | Journal Article | IST-REx-ID: 1170 | OA
M. Lang and J. Stelling, “Modular parameter identification of biomolecular networks,” SIAM Journal on Scientific Computing, vol. 38, no. 6. Society for Industrial and Applied Mathematics, pp. B988–B1008, 2016.
[Submitted Version] View | Files available | DOI | WoS
 
2015 | Published | Conference Paper | IST-REx-ID: 1430 | OA
T. Paixao, D. Sudholt, J. Heredia, and B. Trubenova, “First steps towards a runtime comparison of natural and artificial evolution,” in Proceedings of the 2015 Annual Conference on Genetic and Evolutionary Computation, Madrid, Spain, 2015, pp. 1455–1462.
[Preprint] View | DOI | Download Preprint (ext.) | WoS | arXiv
 
2015 | Published | Journal Article | IST-REx-ID: 1666 | OA
M. Tugrul, T. Paixao, N. H. Barton, and G. Tkačik, “Dynamics of transcription factor binding site evolution,” PLoS Genetics, vol. 11, no. 11. Public Library of Science, 2015.
[Published Version] View | Files available | DOI | WoS
 
earlier version | 2015 | Published | Conference Paper | IST-REx-ID: 1835 | OA
M. Giacobbe, C. C. Guet, A. Gupta, T. A. Henzinger, T. Paixao, and T. Petrov, “Model checking gene regulatory networks,” vol. 9035. Springer, pp. 469–483, 2015.
[Preprint] View | Files available | DOI | Download Preprint (ext.) | arXiv
 
2015 | Published | Journal Article | IST-REx-ID: 1840 | OA
B. Geiger, T. Petrov, G. Kubin, and H. Koeppl, “Optimal Kullback-Leibler aggregation via information bottleneck,” IEEE Transactions on Automatic Control, vol. 60, no. 4. IEEE, pp. 1010–1022, 2015.
[Preprint] View | DOI | Download Preprint (ext.) | WoS | arXiv
 
2015 | Research Data Reference | IST-REx-ID: 9712
M. Tugrul, T. Paixao, N. H. Barton, and G. Tkačik, “Other fitness models for comparison & for interacting TFBSs.” Public Library of Science, 2015.
[Published Version] View | Files available | DOI
 
2015 | Research Data Reference | IST-REx-ID: 9719 | OA
S. Wielgoss, T. Bergmiller, A. M. Bischofberger, and A. R. Hall, “Data from: Adaptation to parasites and costs of parasite resistance in mutator and non-mutator bacteria.” Dryad, 2015.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
2015 | Published | Journal Article | IST-REx-ID: 1542 | OA
T. Paixao et al., “Toward a unifying framework for evolutionary processes,” Journal of Theoretical Biology, vol. 383. Elsevier, pp. 28–43, 2015.
[Published Version] View | Files available | DOI | WoS
 
2014 | Published | Journal Article | IST-REx-ID: 2083 | OA
M. Lagator, A. Morgan, P. Neve, and N. Colegrave, “Role of sex and migration in adaptation to sink environments,” Evolution, vol. 68, no. 8. Wiley, pp. 2296–2305, 2014.
[Published Version] View | Files available | DOI | WoS
 
2014 | Published | Journal Article | IST-REx-ID: 1894 | OA
A. Grabowska et al., “Functional and bioinformatics analysis of two Campylobacter jejuni homologs of the thiol-disulfide oxidoreductase, DsbA,” PLoS One, vol. 9, no. 9. Public Library of Science, 2014.
[Published Version] View | Files available | DOI | WoS
 
2014 | Published | Journal Article | IST-REx-ID: 1913 | OA
I. Milenković, T. Petrov, and G. Kovács, “Patterns of hippocampal tau pathology differentiate neurodegenerative dementias,” Dementia and Geriatric Cognitive Disorders, vol. 38, no. 5–6. Karger Publishers, pp. 375–388, 2014.
[Published Version] View | DOI | Download Published Version (ext.) | WoS | PubMed | Europe PMC
 
2014 | Published | Journal Article | IST-REx-ID: 2036 | OA
M. Lagator, N. Colegrave, and P. Neve, “Selection history and epistatic interactions impact dynamics of adaptation to novel environmental stresses,” Proceedings of the Royal Society of London Series B Biological Sciences, vol. 281, no. 1794. Royal Society, The, 2014.
[Submitted Version] View | Files available | DOI | Download Submitted Version (ext.) | WoS
 
2014 | Published | Journal Article | IST-REx-ID: 2056 | OA
A. Ganguly, T. Petrov, and H. Koeppl, “Markov chain aggregation and its applications to combinatorial reaction networks,” Journal of Mathematical Biology, vol. 69, no. 3. Springer, pp. 767–797, 2014.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS | arXiv
 
2014 | Research Data Reference | IST-REx-ID: 9741 | OA
M. Lagator, N. Colegrave, and P. Neve, “Data from: Selection history and epistatic interactions impact dynamics of adaptation to novel environmental stresses.” Dryad, 2014.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 

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