Calin C Guet

Guet Group

50 Publications

Mark all

[50]
2023 | Published | Journal Article | IST-REx-ID: 12478 | OA
Guet, C. C., Bruneaux, L., Oikonomou, P., Aldana, M., & Cluzel, P. (2023). Monitoring lineages of growing and dividing bacteria reveals an inducible memory of mar operon expression. Frontiers in Microbiology. Frontiers. https://doi.org/10.3389/fmicb.2023.1049255
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[49]
2022 | Published | Journal Article | IST-REx-ID: 10736 | OA
Lagator, M., Sarikas, S., Steinrück, M., Toledo-Aparicio, D., Bollback, J. P., Guet, C. C., & Tkačik, G. (2022). Predicting bacterial promoter function and evolution from random sequences. ELife. eLife Sciences Publications. https://doi.org/10.7554/eLife.64543
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[48]
2022 | Published | Journal Article | IST-REx-ID: 11843 | OA
Tomasek, K., Leithner, A. F., Glatzová, I., Lukesch, M. S., Guet, C. C., & Sixt, M. K. (2022). Type 1 piliated uropathogenic Escherichia coli hijack the host immune response by binding to CD14. ELife. eLife Sciences Publications. https://doi.org/10.7554/eLife.78995
[Published Version] View | Files available | DOI | WoS
 
[47]
2022 | Published | Journal Article | IST-REx-ID: 12333 | OA
Tomanek, I., & Guet, C. C. (2022). Adaptation dynamics between copynumber and point mutations. ELife. eLife Sciences Publications. https://doi.org/10.7554/ELIFE.82240
[Published Version] View | Files available | DOI | WoS
 
[46]
2022 | Research Data Reference | IST-REx-ID: 12339 | OA
Tomanek, I., & Guet, C. C. (2022). Flow cytometry YFP and CFP data and deep sequencing data of populations evolving in galactose. Dryad. https://doi.org/10.5061/dryad.rfj6q57ds
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[45]
2021 | Submitted | Preprint | IST-REx-ID: 10316 | OA
Tomasek, K., Leithner, A. F., Glatzová, I., Lukesch, M. S., Guet, C. C., & Sixt, M. K. (n.d.). Type 1 piliated uropathogenic Escherichia coli hijack the host immune response by binding to CD14. bioRxiv. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2021.10.18.464770
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[44]
2021 | Published | Journal Article | IST-REx-ID: 9283 | OA
Nagy-Staron, A. A., Tomasek, K., Caruso Carter, C., Sonnleitner, E., Kavcic, B., Paixão, T., & Guet, C. C. (2021). Local genetic context shapes the function of a gene regulatory network. ELife. eLife Sciences Publications. https://doi.org/10.7554/elife.65993
[Published Version] View | Files available | DOI | WoS
 
[43]
2021 | Published | Journal Article | IST-REx-ID: 9647 | OA
Petrov, T., Igler, C., Sezgin, A., Henzinger, T. A., & Guet, C. C. (2021). Long lived transients in gene regulation. Theoretical Computer Science. Elsevier. https://doi.org/10.1016/j.tcs.2021.05.023
[Published Version] View | Files available | DOI | WoS
 
[42]
2021 | Published | Journal Article | IST-REx-ID: 9822 | OA
Zisis, T., Schwarz, J., Balles, M., Kretschmer, M., Nemethova, M., Chait, R. P., … Zahler, S. (2021). Sequential and switchable patterning for studying cellular processes under spatiotemporal control. ACS Applied Materials and Interfaces. American Chemical Society. https://doi.org/10.1021/acsami.1c09850
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[41]
2020 | Published | Journal Article | IST-REx-ID: 7652 | OA
Tomanek, I., Grah, R., Lagator, M., Andersson, A. M. C., Bollback, J. P., Tkačik, G., & Guet, C. C. (2020). Gene amplification as a form of population-level gene expression regulation. Nature Ecology & Evolution. Springer Nature. https://doi.org/10.1038/s41559-020-1132-7
[Submitted Version] View | Files available | DOI | WoS
 
[40]
2019 | Published | Journal Article | IST-REx-ID: 6784 | OA
Ruess, J., Pleska, M., Guet, C. C., & Tkačik, G. (2019). Molecular noise of innate immunity shapes bacteria-phage ecologies. PLoS Computational Biology. Public Library of Science. https://doi.org/10.1371/journal.pcbi.1007168
[Published Version] View | Files available | DOI | WoS
 
[39]
2019 | Published | Conference Paper | IST-REx-ID: 7147
Guet, C. C., Henzinger, T. A., Igler, C., Petrov, T., & Sezgin, A. (2019). Transient memory in gene regulation. In 17th International Conference on Computational Methods in Systems Biology (Vol. 11773, pp. 155–187). Trieste, Italy: Springer Nature. https://doi.org/10.1007/978-3-030-31304-3_9
View | DOI | WoS
 
[38]
2019 | Research Data Reference | IST-REx-ID: 9786
Ruess, J., Pleska, M., Guet, C. C., & Tkačik, G. (2019). Supporting text and results. Public Library of Science. https://doi.org/10.1371/journal.pcbi.1007168.s001
[Published Version] View | Files available | DOI
 
[37]
2018 | Published | Journal Article | IST-REx-ID: 457
Pleska, M., Lang, M., Refardt, D., Levin, B., & Guet, C. C. (2018). Phage-host population dynamics promotes prophage acquisition in bacteria with innate immunity. Nature Ecology and Evolution. Springer Nature. https://doi.org/10.1038/s41559-017-0424-z
View | Files available | DOI | WoS
 
[36]
2018 | Published | Journal Article | IST-REx-ID: 503
Tomasek, K., Bergmiller, T., & Guet, C. C. (2018). Lack of cations in flow cytometry buffers affect fluorescence signals by reducing membrane stability and viability of Escherichia coli strains. Journal of Biotechnology. Elsevier. https://doi.org/10.1016/j.jbiotec.2018.01.008
View | DOI | WoS
 
[35]
2018 | Research Data | IST-REx-ID: 5585 | OA
Igler, C., Lagator, M., Tkačik, G., Bollback, J. P., & Guet, C. C. (2018). Data for the paper Evolutionary potential of transcription factors for gene regulatory rewiring. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:108
[Published Version] View | Files available | DOI
 
[34]
2018 | Published | Journal Article | IST-REx-ID: 161 | OA
De Martino, D., Mc, A. A., Bergmiller, T., Guet, C. C., & Tkačik, G. (2018). Statistical mechanics for metabolic networks during steady state growth. Nature Communications. Springer Nature. https://doi.org/10.1038/s41467-018-05417-9
[Published Version] View | Files available | DOI | WoS
 
[33]
2018 | Published | Journal Article | IST-REx-ID: 82 | OA
Chaudhry, W., Pleska, M., Shah, N., Weiss, H., Mccall, I., Meyer, J., … Levin, B. (2018). Leaky resistance and the conditions for the existence of lytic bacteriophage. PLoS Biology. Public Library of Science. https://doi.org/10.1371/journal.pbio.2005971
[Published Version] View | Files available | DOI | WoS
 
[32]
2018 | Published | Journal Article | IST-REx-ID: 67 | OA
Igler, C., Lagator, M., Tkačik, G., Bollback, J. P., & Guet, C. C. (2018). Evolutionary potential of transcription factors for gene regulatory rewiring. Nature Ecology and Evolution. Nature Publishing Group. https://doi.org/10.1038/s41559-018-0651-y
[Submitted Version] View | Files available | DOI | WoS
 
[31]
2018 | Research Data Reference | IST-REx-ID: 9810
Chaudhry, W., Pleska, M., Shah, N., Weiss, H., Mccall, I., Meyer, J., … Levin, B. (2018). Numerical data used in figures. Public Library of Science. https://doi.org/10.1371/journal.pbio.2005971.s008
[Published Version] View | Files available | DOI
 
[30]
2017 | Published | Journal Article | IST-REx-ID: 1351 | OA
Giacobbe, M., Guet, C. C., Gupta, A., Henzinger, T. A., Paixao, T., & Petrov, T. (2017). Model checking the evolution of gene regulatory networks. Acta Informatica. Springer. https://doi.org/10.1007/s00236-016-0278-x
[Published Version] View | Files available | DOI | WoS
 
[29]
2017 | Research Data | IST-REx-ID: 5560 | OA
Bergmiller, T., Andersson, A. M., Tomasek, K., Balleza, E., Kiviet, D., Hauschild, R., … Guet, C. C. (2017). Biased partitioning of the multi-drug efflux pump AcrAB-TolC underlies long-lived phenotypic heterogeneity. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:53
[Published Version] View | Files available | DOI
 
[28]
2017 | Research Data | IST-REx-ID: 5564 | OA
Steinrück, M., & Guet, C. C. (2017). Fastq files for “Complex chromosomal neighborhood effects determine the adaptive potential of a gene under selection.” Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:65
[Published Version] View | Files available | DOI
 
[27]
2017 | Published | Journal Article | IST-REx-ID: 561 | OA
Pleska, M., & Guet, C. C. (2017). Effects of mutations in phage restriction sites during escape from restriction–modification. Biology Letters. The Royal Society. https://doi.org/10.1098/rsbl.2017.0646
[Published Version] View | Files available | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[26]
2017 | Published | Journal Article | IST-REx-ID: 570 | OA
Lagator, M., Sarikas, S., Acar, H., Bollback, J. P., & Guet, C. C. (2017). Regulatory network structure determines patterns of intermolecular epistasis. ELife. eLife Sciences Publications. https://doi.org/10.7554/eLife.28921
[Published Version] View | Files available | DOI
 
[25]
2017 | Published | Journal Article | IST-REx-ID: 613 | OA
Chait, R. P., Ruess, J., Bergmiller, T., Tkačik, G., & Guet, C. C. (2017). Shaping bacterial population behavior through computer interfaced control of individual cells. Nature Communications. Nature Publishing Group. https://doi.org/10.1038/s41467-017-01683-1
[Published Version] View | Files available | DOI
 
[24]
2017 | Published | Journal Article | IST-REx-ID: 655 | OA
Renault, T., Abraham, A., Bergmiller, T., Paradis, G., Rainville, S., Charpentier, E., … Erhardt, M. (2017). Bacterial flagella grow through an injection diffusion mechanism. ELife. eLife Sciences Publications. https://doi.org/10.7554/eLife.23136
[Published Version] View | Files available | DOI
 
[23]
2017 | Published | Journal Article | IST-REx-ID: 665
Bergmiller, T., Andersson, A. M., Tomasek, K., Balleza, E., Kiviet, D., Hauschild, R., … Guet, C. C. (2017). Biased partitioning of the multidrug efflux pump AcrAB TolC underlies long lived phenotypic heterogeneity. Science. American Association for the Advancement of Science. https://doi.org/10.1126/science.aaf4762
View | Files available | DOI
 
[22]
2017 | Published | Journal Article | IST-REx-ID: 704 | OA
Steinrück, M., & Guet, C. C. (2017). Complex chromosomal neighborhood effects determine the adaptive potential of a gene under selection. ELife. eLife Sciences Publications. https://doi.org/10.7554/eLife.25100
[Published Version] View | Files available | DOI
 
[21]
2017 | Published | Journal Article | IST-REx-ID: 735
Barone, V., Lang, M., Krens, G., Pradhan, S., Shamipour, S., Sako, K., … Heisenberg, C.-P. J. (2017). An effective feedback loop between cell-cell contact duration and morphogen signaling determines cell fate. Developmental Cell. Cell Press. https://doi.org/10.1016/j.devcel.2017.09.014
View | Files available | DOI | WoS
 
[20]
2017 | Published | Journal Article | IST-REx-ID: 954 | OA
Lagator, M., Paixao, T., Barton, N. H., Bollback, J. P., & Guet, C. C. (2017). On the mechanistic nature of epistasis in a canonical cis-regulatory element. ELife. eLife Sciences Publications. https://doi.org/10.7554/eLife.25192
[Published Version] View | Files available | DOI | WoS
 
[19]
2017 | Research Data Reference | IST-REx-ID: 9847 | OA
Pleska, M., & Guet, C. C. (2017). Supplementary materials and methods; Full data set from effects of mutations in phage restriction sites during escape from restriction–modification. The Royal Society. https://doi.org/10.6084/m9.figshare.5633917.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[18]
2016 | Published | Journal Article | IST-REx-ID: 1358 | OA
Friedlander, T., Prizak, R., Guet, C. C., Barton, N. H., & Tkačik, G. (2016). Intrinsic limits to gene regulation by global crosstalk. Nature Communications. Nature Publishing Group. https://doi.org/10.1038/ncomms12307
[Published Version] View | Files available | DOI
 
[17]
2016 | Published | Journal Article | IST-REx-ID: 1427 | OA
Lagator, M., Igler, C., Moreno, A., Guet, C. C., & Bollback, J. P. (2016). Epistatic interactions in the arabinose cis-regulatory element. Molecular Biology and Evolution. Oxford University Press. https://doi.org/10.1093/molbev/msv269
[Published Version] View | Files available | DOI
 
[16]
2016 | Published | Journal Article | IST-REx-ID: 1243
Pleska, M., Qian, L., Okura, R., Bergmiller, T., Wakamoto, Y., Kussell, E., & Guet, C. C. (2016). Bacterial autoimmunity due to a restriction-modification system. Current Biology. Cell Press. https://doi.org/10.1016/j.cub.2015.12.041
View | Files available | DOI
 
[15]
2016 | Published | Conference Paper | IST-REx-ID: 1524 | OA
Beica, A., Guet, C. C., & Petrov, T. (2016). Efficient reduction of kappa models by static inspection of the rule-set (Vol. 9271, pp. 173–191). Presented at the HSB: Hybrid Systems Biology, Madrid, Spain: Springer. https://doi.org/10.1007/978-3-319-26916-0_10
[Preprint] View | DOI | Download Preprint (ext.)
 
[14]
2015 | Published | Conference Paper | IST-REx-ID: 1835 | OA
Giacobbe, M., Guet, C. C., Gupta, A., Henzinger, T. A., Paixao, T., & Petrov, T. (2015). Model checking gene regulatory networks. Presented at the TACAS: Tools and Algorithms for the Construction and Analysis of Systems, London, United Kingdom: Springer. https://doi.org/10.1007/978-3-662-46681-0_47
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[13]
2012 | Published | Journal Article | IST-REx-ID: 2943 | OA
Hadizadeh Yazdi, N., Guet, C. C., Johnson, R., & Marko, J. (2012). Variation of the folding and dynamics of the Escherichia coli chromosome with growth conditions. Molecular Microbiology. Wiley-Blackwell. https://doi.org/10.1111/mmi.12071
[Submitted Version] View | DOI | Download Submitted Version (ext.)
 
[12]
2012 | Published | Conference Paper | IST-REx-ID: 3136
Guet, C. C., Gupta, A., Henzinger, T. A., Mateescu, M., & Sezgin, A. (2012). Delayed continuous time Markov chains for genetic regulatory circuits (Vol. 7358, pp. 294–309). Presented at the CAV: Computer Aided Verification, Berkeley, CA, USA: Springer. https://doi.org/10.1007/978-3-642-31424-7_24
View | DOI
 
[11]
2011 | Published | Journal Article | IST-REx-ID: 6496 | OA
Park, H., Oikonomou, P., Guet, C. C., & Cluzel, P. (2011). Noise underlies switching behavior of the bacterial flagellum. Biophysical Journal. Elsevier. https://doi.org/10.1016/j.bpj.2011.09.040
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[10]
2010 | Published | Journal Article | IST-REx-ID: 3748 | OA
Park, H., Pontius, W., Guet, C. C., Marko, J., Emonet, T., & Cluzel, P. (2010). Interdependence of behavioural variability and response to small stimuli in bacteria. Nature. Nature Publishing Group. https://doi.org/10.1038/nature09551
View | DOI | Download (ext.)
 
[9]
2010 | Published | Journal Article | IST-REx-ID: 3749 | OA
Park, H., Guet, C. C., Emonet, T., & Cluzel, P. (2010). Fine-tuning of chemotactic response in E. coli determined by high-throughput capillary assay. Current Microbiology. Springer. https://doi.org/10.1007/s00284-010-9778-z
View | DOI | Download (ext.)
 
[8]
2008 | Published | Journal Article | IST-REx-ID: 3751 | OA
Kinkhabwala, A., & Guet, C. C. (2008). Uncovering cis regulatory codes using synthetic promoter shuffling. PLoS One. Public Library of Science. https://doi.org/10.1371/journal.pone.0002030
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[7]
2008 | Published | Journal Article | IST-REx-ID: 3754
Guet, C. C., Bruneaux, L., Min, T., Siegal Gaskins, D., Figueroa, I., Emonet, T., & Cluzel, P. (2008). Minimally invasive determination of mRNA concentration in single living bacteria. Nucleic Acids Research. Oxford University Press. https://doi.org/10.1093/nar/gkn329
View | DOI
 
[6]
2006 | Published | Journal Article | IST-REx-ID: 3750
Le, T., Guet, C. C., & Cluzel, P. (2006). Protein expression enhancement in efflux-deleted mutant bacteria. Protein Expression and Purification. Elsevier.
View
 
[5]
2006 | Published | Journal Article | IST-REx-ID: 3755 | OA
Le, T., Emonet, T., Harlepp, S., Guet, C. C., & Cluzel, P. (2006). Dynamical determinants of drug-inducible gene expression in a single bacterium. Biophysical Journal. Biophysical Society. https://doi.org/10.1529/biophysj.105.073353
View | DOI | Download (ext.)
 
[4]
2005 | Published | Journal Article | IST-REx-ID: 3753
Le, T., Harlepp, S., Guet, C. C., Dittmar, K., Emonet, T., Pan, T., & Cluzel, P. (2005). Real-time RNA profiling within a single bacterium. PNAS. National Academy of Sciences. https://doi.org/10.1073/pnas.0503311102
View | DOI
 
[3]
2003 | Published | Journal Article | IST-REx-ID: 3752 | OA
Vilar, J., Guet, C. C., & Leibler, S. (2003). Modeling network dynamics: the lac operon, a case study. Journal of Cell Biology. Rockefeller University Press. https://doi.org/10.1083/jcb.200301125
View | DOI | Download (ext.)
 
[2]
2002 | Published | Journal Article | IST-REx-ID: 3757
Guet, C. C., Elowitz, M., Hsing, W., & Leibler, S. (2002). Combinatorial synthesis of genetic networks. Science. American Association for the Advancement of Science. https://doi.org/10.1126/science.1067407
View | DOI | PubMed | Europe PMC
 
[1]
1996 | Published | Journal Article | IST-REx-ID: 3756 | OA
Dogterom, M., Felix, M., Guet, C. C., & Leibler, S. (1996). Influence of M-phase chromatin on the anisotropy of microtubule asters. Journal of Cell Biology. Rockefeller University Press. https://doi.org/doi: 10.1083/jcb.133.1.125
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
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50 Publications

Mark all

[50]
2023 | Published | Journal Article | IST-REx-ID: 12478 | OA
Guet, C. C., Bruneaux, L., Oikonomou, P., Aldana, M., & Cluzel, P. (2023). Monitoring lineages of growing and dividing bacteria reveals an inducible memory of mar operon expression. Frontiers in Microbiology. Frontiers. https://doi.org/10.3389/fmicb.2023.1049255
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[49]
2022 | Published | Journal Article | IST-REx-ID: 10736 | OA
Lagator, M., Sarikas, S., Steinrück, M., Toledo-Aparicio, D., Bollback, J. P., Guet, C. C., & Tkačik, G. (2022). Predicting bacterial promoter function and evolution from random sequences. ELife. eLife Sciences Publications. https://doi.org/10.7554/eLife.64543
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[48]
2022 | Published | Journal Article | IST-REx-ID: 11843 | OA
Tomasek, K., Leithner, A. F., Glatzová, I., Lukesch, M. S., Guet, C. C., & Sixt, M. K. (2022). Type 1 piliated uropathogenic Escherichia coli hijack the host immune response by binding to CD14. ELife. eLife Sciences Publications. https://doi.org/10.7554/eLife.78995
[Published Version] View | Files available | DOI | WoS
 
[47]
2022 | Published | Journal Article | IST-REx-ID: 12333 | OA
Tomanek, I., & Guet, C. C. (2022). Adaptation dynamics between copynumber and point mutations. ELife. eLife Sciences Publications. https://doi.org/10.7554/ELIFE.82240
[Published Version] View | Files available | DOI | WoS
 
[46]
2022 | Research Data Reference | IST-REx-ID: 12339 | OA
Tomanek, I., & Guet, C. C. (2022). Flow cytometry YFP and CFP data and deep sequencing data of populations evolving in galactose. Dryad. https://doi.org/10.5061/dryad.rfj6q57ds
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[45]
2021 | Submitted | Preprint | IST-REx-ID: 10316 | OA
Tomasek, K., Leithner, A. F., Glatzová, I., Lukesch, M. S., Guet, C. C., & Sixt, M. K. (n.d.). Type 1 piliated uropathogenic Escherichia coli hijack the host immune response by binding to CD14. bioRxiv. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2021.10.18.464770
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[44]
2021 | Published | Journal Article | IST-REx-ID: 9283 | OA
Nagy-Staron, A. A., Tomasek, K., Caruso Carter, C., Sonnleitner, E., Kavcic, B., Paixão, T., & Guet, C. C. (2021). Local genetic context shapes the function of a gene regulatory network. ELife. eLife Sciences Publications. https://doi.org/10.7554/elife.65993
[Published Version] View | Files available | DOI | WoS
 
[43]
2021 | Published | Journal Article | IST-REx-ID: 9647 | OA
Petrov, T., Igler, C., Sezgin, A., Henzinger, T. A., & Guet, C. C. (2021). Long lived transients in gene regulation. Theoretical Computer Science. Elsevier. https://doi.org/10.1016/j.tcs.2021.05.023
[Published Version] View | Files available | DOI | WoS
 
[42]
2021 | Published | Journal Article | IST-REx-ID: 9822 | OA
Zisis, T., Schwarz, J., Balles, M., Kretschmer, M., Nemethova, M., Chait, R. P., … Zahler, S. (2021). Sequential and switchable patterning for studying cellular processes under spatiotemporal control. ACS Applied Materials and Interfaces. American Chemical Society. https://doi.org/10.1021/acsami.1c09850
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[41]
2020 | Published | Journal Article | IST-REx-ID: 7652 | OA
Tomanek, I., Grah, R., Lagator, M., Andersson, A. M. C., Bollback, J. P., Tkačik, G., & Guet, C. C. (2020). Gene amplification as a form of population-level gene expression regulation. Nature Ecology & Evolution. Springer Nature. https://doi.org/10.1038/s41559-020-1132-7
[Submitted Version] View | Files available | DOI | WoS
 
[40]
2019 | Published | Journal Article | IST-REx-ID: 6784 | OA
Ruess, J., Pleska, M., Guet, C. C., & Tkačik, G. (2019). Molecular noise of innate immunity shapes bacteria-phage ecologies. PLoS Computational Biology. Public Library of Science. https://doi.org/10.1371/journal.pcbi.1007168
[Published Version] View | Files available | DOI | WoS
 
[39]
2019 | Published | Conference Paper | IST-REx-ID: 7147
Guet, C. C., Henzinger, T. A., Igler, C., Petrov, T., & Sezgin, A. (2019). Transient memory in gene regulation. In 17th International Conference on Computational Methods in Systems Biology (Vol. 11773, pp. 155–187). Trieste, Italy: Springer Nature. https://doi.org/10.1007/978-3-030-31304-3_9
View | DOI | WoS
 
[38]
2019 | Research Data Reference | IST-REx-ID: 9786
Ruess, J., Pleska, M., Guet, C. C., & Tkačik, G. (2019). Supporting text and results. Public Library of Science. https://doi.org/10.1371/journal.pcbi.1007168.s001
[Published Version] View | Files available | DOI
 
[37]
2018 | Published | Journal Article | IST-REx-ID: 457
Pleska, M., Lang, M., Refardt, D., Levin, B., & Guet, C. C. (2018). Phage-host population dynamics promotes prophage acquisition in bacteria with innate immunity. Nature Ecology and Evolution. Springer Nature. https://doi.org/10.1038/s41559-017-0424-z
View | Files available | DOI | WoS
 
[36]
2018 | Published | Journal Article | IST-REx-ID: 503
Tomasek, K., Bergmiller, T., & Guet, C. C. (2018). Lack of cations in flow cytometry buffers affect fluorescence signals by reducing membrane stability and viability of Escherichia coli strains. Journal of Biotechnology. Elsevier. https://doi.org/10.1016/j.jbiotec.2018.01.008
View | DOI | WoS
 
[35]
2018 | Research Data | IST-REx-ID: 5585 | OA
Igler, C., Lagator, M., Tkačik, G., Bollback, J. P., & Guet, C. C. (2018). Data for the paper Evolutionary potential of transcription factors for gene regulatory rewiring. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:108
[Published Version] View | Files available | DOI
 
[34]
2018 | Published | Journal Article | IST-REx-ID: 161 | OA
De Martino, D., Mc, A. A., Bergmiller, T., Guet, C. C., & Tkačik, G. (2018). Statistical mechanics for metabolic networks during steady state growth. Nature Communications. Springer Nature. https://doi.org/10.1038/s41467-018-05417-9
[Published Version] View | Files available | DOI | WoS
 
[33]
2018 | Published | Journal Article | IST-REx-ID: 82 | OA
Chaudhry, W., Pleska, M., Shah, N., Weiss, H., Mccall, I., Meyer, J., … Levin, B. (2018). Leaky resistance and the conditions for the existence of lytic bacteriophage. PLoS Biology. Public Library of Science. https://doi.org/10.1371/journal.pbio.2005971
[Published Version] View | Files available | DOI | WoS
 
[32]
2018 | Published | Journal Article | IST-REx-ID: 67 | OA
Igler, C., Lagator, M., Tkačik, G., Bollback, J. P., & Guet, C. C. (2018). Evolutionary potential of transcription factors for gene regulatory rewiring. Nature Ecology and Evolution. Nature Publishing Group. https://doi.org/10.1038/s41559-018-0651-y
[Submitted Version] View | Files available | DOI | WoS
 
[31]
2018 | Research Data Reference | IST-REx-ID: 9810
Chaudhry, W., Pleska, M., Shah, N., Weiss, H., Mccall, I., Meyer, J., … Levin, B. (2018). Numerical data used in figures. Public Library of Science. https://doi.org/10.1371/journal.pbio.2005971.s008
[Published Version] View | Files available | DOI
 
[30]
2017 | Published | Journal Article | IST-REx-ID: 1351 | OA
Giacobbe, M., Guet, C. C., Gupta, A., Henzinger, T. A., Paixao, T., & Petrov, T. (2017). Model checking the evolution of gene regulatory networks. Acta Informatica. Springer. https://doi.org/10.1007/s00236-016-0278-x
[Published Version] View | Files available | DOI | WoS
 
[29]
2017 | Research Data | IST-REx-ID: 5560 | OA
Bergmiller, T., Andersson, A. M., Tomasek, K., Balleza, E., Kiviet, D., Hauschild, R., … Guet, C. C. (2017). Biased partitioning of the multi-drug efflux pump AcrAB-TolC underlies long-lived phenotypic heterogeneity. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:53
[Published Version] View | Files available | DOI
 
[28]
2017 | Research Data | IST-REx-ID: 5564 | OA
Steinrück, M., & Guet, C. C. (2017). Fastq files for “Complex chromosomal neighborhood effects determine the adaptive potential of a gene under selection.” Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:65
[Published Version] View | Files available | DOI
 
[27]
2017 | Published | Journal Article | IST-REx-ID: 561 | OA
Pleska, M., & Guet, C. C. (2017). Effects of mutations in phage restriction sites during escape from restriction–modification. Biology Letters. The Royal Society. https://doi.org/10.1098/rsbl.2017.0646
[Published Version] View | Files available | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[26]
2017 | Published | Journal Article | IST-REx-ID: 570 | OA
Lagator, M., Sarikas, S., Acar, H., Bollback, J. P., & Guet, C. C. (2017). Regulatory network structure determines patterns of intermolecular epistasis. ELife. eLife Sciences Publications. https://doi.org/10.7554/eLife.28921
[Published Version] View | Files available | DOI
 
[25]
2017 | Published | Journal Article | IST-REx-ID: 613 | OA
Chait, R. P., Ruess, J., Bergmiller, T., Tkačik, G., & Guet, C. C. (2017). Shaping bacterial population behavior through computer interfaced control of individual cells. Nature Communications. Nature Publishing Group. https://doi.org/10.1038/s41467-017-01683-1
[Published Version] View | Files available | DOI
 
[24]
2017 | Published | Journal Article | IST-REx-ID: 655 | OA
Renault, T., Abraham, A., Bergmiller, T., Paradis, G., Rainville, S., Charpentier, E., … Erhardt, M. (2017). Bacterial flagella grow through an injection diffusion mechanism. ELife. eLife Sciences Publications. https://doi.org/10.7554/eLife.23136
[Published Version] View | Files available | DOI
 
[23]
2017 | Published | Journal Article | IST-REx-ID: 665
Bergmiller, T., Andersson, A. M., Tomasek, K., Balleza, E., Kiviet, D., Hauschild, R., … Guet, C. C. (2017). Biased partitioning of the multidrug efflux pump AcrAB TolC underlies long lived phenotypic heterogeneity. Science. American Association for the Advancement of Science. https://doi.org/10.1126/science.aaf4762
View | Files available | DOI
 
[22]
2017 | Published | Journal Article | IST-REx-ID: 704 | OA
Steinrück, M., & Guet, C. C. (2017). Complex chromosomal neighborhood effects determine the adaptive potential of a gene under selection. ELife. eLife Sciences Publications. https://doi.org/10.7554/eLife.25100
[Published Version] View | Files available | DOI
 
[21]
2017 | Published | Journal Article | IST-REx-ID: 735
Barone, V., Lang, M., Krens, G., Pradhan, S., Shamipour, S., Sako, K., … Heisenberg, C.-P. J. (2017). An effective feedback loop between cell-cell contact duration and morphogen signaling determines cell fate. Developmental Cell. Cell Press. https://doi.org/10.1016/j.devcel.2017.09.014
View | Files available | DOI | WoS
 
[20]
2017 | Published | Journal Article | IST-REx-ID: 954 | OA
Lagator, M., Paixao, T., Barton, N. H., Bollback, J. P., & Guet, C. C. (2017). On the mechanistic nature of epistasis in a canonical cis-regulatory element. ELife. eLife Sciences Publications. https://doi.org/10.7554/eLife.25192
[Published Version] View | Files available | DOI | WoS
 
[19]
2017 | Research Data Reference | IST-REx-ID: 9847 | OA
Pleska, M., & Guet, C. C. (2017). Supplementary materials and methods; Full data set from effects of mutations in phage restriction sites during escape from restriction–modification. The Royal Society. https://doi.org/10.6084/m9.figshare.5633917.v1
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
[18]
2016 | Published | Journal Article | IST-REx-ID: 1358 | OA
Friedlander, T., Prizak, R., Guet, C. C., Barton, N. H., & Tkačik, G. (2016). Intrinsic limits to gene regulation by global crosstalk. Nature Communications. Nature Publishing Group. https://doi.org/10.1038/ncomms12307
[Published Version] View | Files available | DOI
 
[17]
2016 | Published | Journal Article | IST-REx-ID: 1427 | OA
Lagator, M., Igler, C., Moreno, A., Guet, C. C., & Bollback, J. P. (2016). Epistatic interactions in the arabinose cis-regulatory element. Molecular Biology and Evolution. Oxford University Press. https://doi.org/10.1093/molbev/msv269
[Published Version] View | Files available | DOI
 
[16]
2016 | Published | Journal Article | IST-REx-ID: 1243
Pleska, M., Qian, L., Okura, R., Bergmiller, T., Wakamoto, Y., Kussell, E., & Guet, C. C. (2016). Bacterial autoimmunity due to a restriction-modification system. Current Biology. Cell Press. https://doi.org/10.1016/j.cub.2015.12.041
View | Files available | DOI
 
[15]
2016 | Published | Conference Paper | IST-REx-ID: 1524 | OA
Beica, A., Guet, C. C., & Petrov, T. (2016). Efficient reduction of kappa models by static inspection of the rule-set (Vol. 9271, pp. 173–191). Presented at the HSB: Hybrid Systems Biology, Madrid, Spain: Springer. https://doi.org/10.1007/978-3-319-26916-0_10
[Preprint] View | DOI | Download Preprint (ext.)
 
[14]
2015 | Published | Conference Paper | IST-REx-ID: 1835 | OA
Giacobbe, M., Guet, C. C., Gupta, A., Henzinger, T. A., Paixao, T., & Petrov, T. (2015). Model checking gene regulatory networks. Presented at the TACAS: Tools and Algorithms for the Construction and Analysis of Systems, London, United Kingdom: Springer. https://doi.org/10.1007/978-3-662-46681-0_47
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[13]
2012 | Published | Journal Article | IST-REx-ID: 2943 | OA
Hadizadeh Yazdi, N., Guet, C. C., Johnson, R., & Marko, J. (2012). Variation of the folding and dynamics of the Escherichia coli chromosome with growth conditions. Molecular Microbiology. Wiley-Blackwell. https://doi.org/10.1111/mmi.12071
[Submitted Version] View | DOI | Download Submitted Version (ext.)
 
[12]
2012 | Published | Conference Paper | IST-REx-ID: 3136
Guet, C. C., Gupta, A., Henzinger, T. A., Mateescu, M., & Sezgin, A. (2012). Delayed continuous time Markov chains for genetic regulatory circuits (Vol. 7358, pp. 294–309). Presented at the CAV: Computer Aided Verification, Berkeley, CA, USA: Springer. https://doi.org/10.1007/978-3-642-31424-7_24
View | DOI
 
[11]
2011 | Published | Journal Article | IST-REx-ID: 6496 | OA
Park, H., Oikonomou, P., Guet, C. C., & Cluzel, P. (2011). Noise underlies switching behavior of the bacterial flagellum. Biophysical Journal. Elsevier. https://doi.org/10.1016/j.bpj.2011.09.040
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[10]
2010 | Published | Journal Article | IST-REx-ID: 3748 | OA
Park, H., Pontius, W., Guet, C. C., Marko, J., Emonet, T., & Cluzel, P. (2010). Interdependence of behavioural variability and response to small stimuli in bacteria. Nature. Nature Publishing Group. https://doi.org/10.1038/nature09551
View | DOI | Download (ext.)
 
[9]
2010 | Published | Journal Article | IST-REx-ID: 3749 | OA
Park, H., Guet, C. C., Emonet, T., & Cluzel, P. (2010). Fine-tuning of chemotactic response in E. coli determined by high-throughput capillary assay. Current Microbiology. Springer. https://doi.org/10.1007/s00284-010-9778-z
View | DOI | Download (ext.)
 
[8]
2008 | Published | Journal Article | IST-REx-ID: 3751 | OA
Kinkhabwala, A., & Guet, C. C. (2008). Uncovering cis regulatory codes using synthetic promoter shuffling. PLoS One. Public Library of Science. https://doi.org/10.1371/journal.pone.0002030
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[7]
2008 | Published | Journal Article | IST-REx-ID: 3754
Guet, C. C., Bruneaux, L., Min, T., Siegal Gaskins, D., Figueroa, I., Emonet, T., & Cluzel, P. (2008). Minimally invasive determination of mRNA concentration in single living bacteria. Nucleic Acids Research. Oxford University Press. https://doi.org/10.1093/nar/gkn329
View | DOI
 
[6]
2006 | Published | Journal Article | IST-REx-ID: 3750
Le, T., Guet, C. C., & Cluzel, P. (2006). Protein expression enhancement in efflux-deleted mutant bacteria. Protein Expression and Purification. Elsevier.
View
 
[5]
2006 | Published | Journal Article | IST-REx-ID: 3755 | OA
Le, T., Emonet, T., Harlepp, S., Guet, C. C., & Cluzel, P. (2006). Dynamical determinants of drug-inducible gene expression in a single bacterium. Biophysical Journal. Biophysical Society. https://doi.org/10.1529/biophysj.105.073353
View | DOI | Download (ext.)
 
[4]
2005 | Published | Journal Article | IST-REx-ID: 3753
Le, T., Harlepp, S., Guet, C. C., Dittmar, K., Emonet, T., Pan, T., & Cluzel, P. (2005). Real-time RNA profiling within a single bacterium. PNAS. National Academy of Sciences. https://doi.org/10.1073/pnas.0503311102
View | DOI
 
[3]
2003 | Published | Journal Article | IST-REx-ID: 3752 | OA
Vilar, J., Guet, C. C., & Leibler, S. (2003). Modeling network dynamics: the lac operon, a case study. Journal of Cell Biology. Rockefeller University Press. https://doi.org/10.1083/jcb.200301125
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[2]
2002 | Published | Journal Article | IST-REx-ID: 3757
Guet, C. C., Elowitz, M., Hsing, W., & Leibler, S. (2002). Combinatorial synthesis of genetic networks. Science. American Association for the Advancement of Science. https://doi.org/10.1126/science.1067407
View | DOI | PubMed | Europe PMC
 
[1]
1996 | Published | Journal Article | IST-REx-ID: 3756 | OA
Dogterom, M., Felix, M., Guet, C. C., & Leibler, S. (1996). Influence of M-phase chromatin on the anisotropy of microtubule asters. Journal of Cell Biology. Rockefeller University Press. https://doi.org/doi: 10.1083/jcb.133.1.125
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
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