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Pavel Payne

Bryan Wu

Puzhen Xia

Iva Atanaskovic

Antoine Loussouarn

Calin Guet

Roderich Römhild

Ekaterina Krasnopeeva

Nathalie Gruber

Athina Diakogianni

Stepan Ovchinnikov

Moritz Lang

Tatjana Petrov

Tiago Paixao

Claudia Igler

Maria Mateescu

Anna Nagy-Staron

Nela Nikolic

Nikola Zarevski

Maros Pleska

Rok Grah

Mato Lagator

Stephanie Kainrath

Isabella Tomanek

Tobias Bergmiller

Remy Chait

Kirti Jain



134 Publications

2017 | Published | Journal Article | IST-REx-ID: 1336 | OA
T. Paixao, J. Pérez Heredia, D. Sudholt, and B. Trubenova, “Towards a runtime comparison of natural and artificial evolution,” Algorithmica, vol. 78, no. 2. Springer, pp. 681–713, 2017.
[Published Version] View | Files available | DOI | WoS
 
2017 | Published | Journal Article | IST-REx-ID: 1084
C. Fang et al., “Insulation and wiring specificity of BceR like response regulators and their target promoters in Bacillus subtilis,” Molecular Microbiology, vol. 104, no. 1. Wiley-Blackwell, pp. 16–31, 2017.
View | DOI | WoS
 
2017 | Published | Journal Article | IST-REx-ID: 735
V. Barone et al., “An effective feedback loop between cell-cell contact duration and morphogen signaling determines cell fate,” Developmental Cell, vol. 43, no. 2. Cell Press, pp. 198–211, 2017.
View | Files available | DOI | WoS
 
2017 | Published | Journal Article | IST-REx-ID: 1028 | OA
S. Kainrath, M. Stadler, E. Gschaider-Reichhart, M. Distel, and H. L. Janovjak, “Green-light-induced inactivation of receptor signaling using cobalamin-binding domains,” Angewandte Chemie - International Edition, vol. 56, no. 16. Wiley-Blackwell, pp. 4608–4611, 2017.
[Published Version] View | Files available | DOI | WoS
 
2017 | Published | Journal Article | IST-REx-ID: 696 | OA
M. Lukacisinova, S. Novak, and T. Paixao, “Stress induced mutagenesis: Stress diversity facilitates the persistence of mutator genes,” PLoS Computational Biology, vol. 13, no. 7. Public Library of Science, 2017.
[Published Version] View | Files available | DOI | WoS
 
2017 | Published | Journal Article | IST-REx-ID: 704 | OA
M. Steinrück and C. C. Guet, “Complex chromosomal neighborhood effects determine the adaptive potential of a gene under selection,” eLife, vol. 6. eLife Sciences Publications, 2017.
[Published Version] View | Files available | DOI | WoS
 
2016 | Published | Journal Article | IST-REx-ID: 1170 | OA
M. Lang and J. Stelling, “Modular parameter identification of biomolecular networks,” SIAM Journal on Scientific Computing, vol. 38, no. 6. Society for Industrial and Applied Mathematics , pp. B988–B1008, 2016.
[Submitted Version] View | Files available | DOI | WoS
 
2016 | Published | Conference Paper | IST-REx-ID: 1220 | OA
G. Mikić, A. Stoll, J. Bevirt, R. Grah, and M. Moore, “Fuselage boundary layer ingestion propulsion applied to a thin haul commuter aircraft for optimal efficiency,” presented at the AIAA: Aviation Technology, Integration, and Operations Conference, Washington, D.C., USA, 2016, pp. 1–19.
[Preprint] View | DOI | Download Preprint (ext.)
 
2016 | Published | Journal Article | IST-REx-ID: 1342 | OA
M. Baym et al., “Spatiotemporal microbial evolution on antibiotic landscapes,” Science, vol. 353, no. 6304. American Association for the Advancement of Science, pp. 1147–1151, 2016.
[Preprint] View | DOI | Download Preprint (ext.) | WoS
 
2016 | Published | Conference Paper | IST-REx-ID: 1349 | OA
P. Oliveto, T. Paixao, J. Heredia, D. Sudholt, and B. Trubenova, “When non-elitism outperforms elitism for crossing fitness valleys,” in Proceedings of the Genetic and Evolutionary Computation Conference 2016 , Denver, CO, USA, 2016, pp. 1163–1170.
[Published Version] View | Files available | DOI | WoS
 
2016 | Published | Journal Article | IST-REx-ID: 1359 | OA
T. Paixao and N. H. Barton, “The effect of gene interactions on the long-term response to selection,” PNAS, vol. 113, no. 16. National Academy of Sciences, pp. 4422–4427, 2016.
[Published Version] View | DOI | Download Published Version (ext.) | WoS | PubMed | Europe PMC
 
2016 | Published | Journal Article | IST-REx-ID: 1427 | OA
M. Lagator, C. Igler, A. Moreno, C. C. Guet, and J. P. Bollback, “Epistatic interactions in the arabinose cis-regulatory element,” Molecular Biology and Evolution, vol. 33, no. 3. Oxford University Press, pp. 761–769, 2016.
[Published Version] View | Files available | DOI | WoS
 
2016 | Published | Journal Article | IST-REx-ID: 1250 | OA
A. Boehm, M. Arnoldini, T. Bergmiller, T. Röösli, C. Bigosch, and M. Ackermann, “Genetic manipulation of glycogen allocation affects replicative lifespan in E coli,” PLoS Genetics, vol. 12, no. 4. Public Library of Science, 2016.
[Published Version] View | Files available | DOI | WoS
 
2016 | Published | Journal Article | IST-REx-ID: 1290 | OA
L. Stone, M. Baym, T. Lieberman, R. P. Chait, J. Clardy, and R. Kishony, “Compounds that select against the tetracycline-resistance efflux pump,” Nature Chemical Biology, vol. 12, no. 11. Nature Publishing Group, pp. 902–904, 2016.
[Preprint] View | DOI | Download Preprint (ext.) | WoS
 
2016 | Published | Conference Paper | IST-REx-ID: 1320 | OA
M. Lang and E. Sontag, “Scale-invariant systems realize nonlinear differential operators,” presented at the ACC: American Control Conference, Boston, MA, USA, 2016, vol. 2016–July.
[Submitted Version] View | Files available | DOI
 
2016 | Published | Journal Article | IST-REx-ID: 1332 | OA
R. P. Chait, A. Palmer, I. Yelin, and R. Kishony, “Pervasive selection for and against antibiotic resistance in inhomogeneous multistress environments,” Nature Communications, vol. 7. Nature Publishing Group, 2016.
[Published Version] View | Files available | DOI | WoS
 
2016 | Published | Conference Paper | IST-REx-ID: 1524 | OA
A. Beica, C. C. Guet, and T. Petrov, “Efficient reduction of kappa models by static inspection of the rule-set,” presented at the HSB: Hybrid Systems Biology, Madrid, Spain, 2016, vol. 9271, pp. 173–191.
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 
2016 | Published | Journal Article | IST-REx-ID: 1008
R. Gnügge, L. Dharmarajan, M. Lang, and J. Stelling, “An orthogonal permease–inducer–repressor feedback loop shows bistability,” ACS Synthetic Biology, vol. 5, no. 10. American Chemical Society, pp. 1098–1107, 2016.
View | DOI | WoS
 
2016 | Research Data Reference | IST-REx-ID: 9873
A. Boehm, M. Arnoldini, T. Bergmiller, T. Röösli, C. Bigosch, and M. Ackermann, “Quantification of the growth rate reduction as a consequence of age-specific mortality.” Public Library of Science, 2016.
[Published Version] View | Files available | DOI
 
2016 | Published | Journal Article | IST-REx-ID: 1358 | OA
T. Friedlander, R. Prizak, C. C. Guet, N. H. Barton, and G. Tkačik, “Intrinsic limits to gene regulation by global crosstalk,” Nature Communications, vol. 7. Nature Publishing Group, 2016.
[Published Version] View | Files available | DOI | WoS
 

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