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Antoine Loussouarn

Calin Guet

Ekaterina Krasnopeeva

Nathalie Gruber

Athina Diakogianni

Iva Atanaskovic

Puzhen Xia

Roderich Römhild

Pavel Payne

Stepan Ovchinnikov

Bryan Wu

Nela Nikolic

Kirti Jain

Maros Pleska

Moritz Lang

Stephanie Kainrath

Maria Mateescu

Tobias Bergmiller

Mato Lagator

Anna Nagy-Staron

Rok Grah

Claudia Igler

Tiago Paixao

Isabella Tomanek

Nikola Zarevski

Remy Chait

Tatjana Petrov



133 Publications

2016 | Published | Journal Article | IST-REx-ID: 1332 | OA
Pervasive selection for and against antibiotic resistance in inhomogeneous multistress environments
R.P. Chait, A. Palmer, I. Yelin, R. Kishony, Nature Communications 7 (2016).
[Published Version] View | Files available | DOI | WoS
 
2016 | Published | Journal Article | IST-REx-ID: 1290 | OA
Compounds that select against the tetracycline-resistance efflux pump
L. Stone, M. Baym, T. Lieberman, R.P. Chait, J. Clardy, R. Kishony, Nature Chemical Biology 12 (2016) 902–904.
[Preprint] View | DOI | Download Preprint (ext.) | WoS
 
2016 | Published | Journal Article | IST-REx-ID: 1250 | OA
Genetic manipulation of glycogen allocation affects replicative lifespan in E coli
A. Boehm, M. Arnoldini, T. Bergmiller, T. Röösli, C. Bigosch, M. Ackermann, PLoS Genetics 12 (2016).
[Published Version] View | Files available | DOI | WoS
 
2016 | Research Data Reference | IST-REx-ID: 9873
Quantification of the growth rate reduction as a consequence of age-specific mortality
A. Boehm, M. Arnoldini, T. Bergmiller, T. Röösli, C. Bigosch, M. Ackermann, (2016).
[Published Version] View | Files available | DOI
 
2016 | Published | Journal Article | IST-REx-ID: 1243
Bacterial autoimmunity due to a restriction-modification system
M. Pleska, L. Qian, R. Okura, T. Bergmiller, Y. Wakamoto, E. Kussell, C.C. Guet, Current Biology 26 (2016) 404–409.
View | Files available | DOI | WoS
 
2016 | Published | Conference Paper | IST-REx-ID: 1234 | OA
Faster statistical model checking for unbounded temporal properties
P. Daca, T.A. Henzinger, J. Kretinsky, T. Petrov, in:, Springer, 2016, pp. 112–129.
[Preprint] View | Files available | DOI | Download Preprint (ext.) | WoS | arXiv
 
2016 | Published | Journal Article | IST-REx-ID: 1170 | OA
Modular parameter identification of biomolecular networks
M. Lang, J. Stelling, SIAM Journal on Scientific Computing 38 (2016) B988–B1008.
[Submitted Version] View | Files available | DOI | WoS
 
2016 | Published | Journal Article | IST-REx-ID: 1008
An orthogonal permease–inducer–repressor feedback loop shows bistability
R. Gnügge, L. Dharmarajan, M. Lang, J. Stelling, ACS Synthetic Biology 5 (2016) 1098–1107.
View | DOI | WoS
 
2015 | Published | Conference Paper | IST-REx-ID: 1835 | OA
Model checking gene regulatory networks
M. Giacobbe, C.C. Guet, A. Gupta, T.A. Henzinger, T. Paixao, T. Petrov, 9035 (2015) 469–483.
[Preprint] View | Files available | DOI | Download Preprint (ext.) | arXiv
 
2015 | Research Data Reference | IST-REx-ID: 9719 | OA
Data from: Adaptation to parasites and costs of parasite resistance in mutator and non-mutator bacteria
S. Wielgoss, T. Bergmiller, A.M. Bischofberger, A.R. Hall, (2015).
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
2015 | Published | Journal Article | IST-REx-ID: 1666 | OA
Dynamics of transcription factor binding site evolution
M. Tugrul, T. Paixao, N.H. Barton, G. Tkačik, PLoS Genetics 11 (2015).
[Published Version] View | Files available | DOI | WoS
 
2015 | Research Data Reference | IST-REx-ID: 9712
Other fitness models for comparison & for interacting TFBSs
M. Tugrul, T. Paixao, N.H. Barton, G. Tkačik, (2015).
[Published Version] View | Files available | DOI
 
2015 | Published | Conference Paper | IST-REx-ID: 1430 | OA
First steps towards a runtime comparison of natural and artificial evolution
T. Paixao, D. Sudholt, J. Heredia, B. Trubenova, in:, Proceedings of the 2015 Annual Conference on Genetic and Evolutionary Computation, ACM, 2015, pp. 1455–1462.
[Preprint] View | DOI | Download Preprint (ext.) | WoS | arXiv
 
2015 | Published | Journal Article | IST-REx-ID: 1840 | OA
Optimal Kullback-Leibler aggregation via information bottleneck
B. Geiger, T. Petrov, G. Kubin, H. Koeppl, IEEE Transactions on Automatic Control 60 (2015) 1010–1022.
[Preprint] View | DOI | Download Preprint (ext.) | WoS | arXiv
 
2015 | Published | Journal Article | IST-REx-ID: 1542 | OA
Toward a unifying framework for evolutionary processes
T. Paixao, G. Badkobeh, N.H. Barton, D. Çörüş, D. Dang, T. Friedrich, P. Lehre, D. Sudholt, A. Sutton, B. Trubenova, Journal of Theoretical Biology 383 (2015) 28–43.
[Published Version] View | Files available | DOI | WoS
 
2014 | Published | Journal Article | IST-REx-ID: 2083 | OA
Role of sex and migration in adaptation to sink environments
M. Lagator, A. Morgan, P. Neve, N. Colegrave, Evolution 68 (2014) 2296–2305.
[Published Version] View | Files available | DOI | WoS
 
2014 | Research Data Reference | IST-REx-ID: 9747 | OA
Data from: Role of sex and migration in adaptation to sink environments
M. Lagator, A. Morgan, P. Neve, N. Colegrave, (2014).
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
2014 | Published | Journal Article | IST-REx-ID: 2056 | OA
Markov chain aggregation and its applications to combinatorial reaction networks
A. Ganguly, T. Petrov, H. Koeppl, Journal of Mathematical Biology 69 (2014) 767–797.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS | arXiv
 
2014 | Published | Journal Article | IST-REx-ID: 2036 | OA
Selection history and epistatic interactions impact dynamics of adaptation to novel environmental stresses
M. Lagator, N. Colegrave, P. Neve, Proceedings of the Royal Society of London Series B Biological Sciences 281 (2014).
[Submitted Version] View | Files available | DOI | Download Submitted Version (ext.) | WoS
 
2014 | Research Data Reference | IST-REx-ID: 9741 | OA
Data from: Selection history and epistatic interactions impact dynamics of adaptation to novel environmental stresses
M. Lagator, N. Colegrave, P. Neve, (2014).
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 

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