Please note that LibreCat no longer supports Internet Explorer versions 8 or 9 (or earlier).

We recommend upgrading to the latest Internet Explorer, Google Chrome, or Firefox.

Calin Guet

Iva Atanaskovic

Athina Diakogianni

Nathalie Gruber

Antoine Loussouarn

Stepan Ovchinnikov

Pavel Payne

Roderich Römhild

Bryan Wu

Puzhen Xia

Tobias Bergmiller

Remy Chait

Rok Grah

Claudia Igler

Kirti Jain

Stephanie Kainrath

Ekaterina Krasnopeeva

Mato Lagator

Moritz Lang

Maria Mateescu

Anna Nagy-Staron

Nela Nikolic

Tiago Paixao

Tatjana Petrov

Maros Pleska

Isabella Tomanek

Nikola Zarevski



138 Publications

2016 | Published | Journal Article | IST-REx-ID: 1290 | OA
Compounds that select against the tetracycline-resistance efflux pump
L. Stone, M. Baym, T. Lieberman, R.P. Chait, J. Clardy, R. Kishony, Nature Chemical Biology 12 (2016) 902–904.
[Preprint] View | DOI | Download Preprint (ext.) | WoS
 
2016 | Published | Conference Paper | IST-REx-ID: 1320 | OA
Scale-invariant systems realize nonlinear differential operators
M. Lang, E. Sontag, in:, IEEE, 2016.
[Submitted Version] View | Files available | DOI
 
2016 | Published | Journal Article | IST-REx-ID: 1332 | OA
Pervasive selection for and against antibiotic resistance in inhomogeneous multistress environments
R.P. Chait, A. Palmer, I. Yelin, R. Kishony, Nature Communications 7 (2016).
[Published Version] View | Files available | DOI | WoS
 
2016 | Published | Journal Article | IST-REx-ID: 1342 | OA
Spatiotemporal microbial evolution on antibiotic landscapes
M. Baym, T. Lieberman, E. Kelsic, R.P. Chait, R. Gross, I. Yelin, R. Kishony, Science 353 (2016) 1147–1151.
[Preprint] View | DOI | Download Preprint (ext.) | WoS
 
2016 | Published | Conference Paper | IST-REx-ID: 1349 | OA
When non-elitism outperforms elitism for crossing fitness valleys
P. Oliveto, T. Paixao, J. Heredia, D. Sudholt, B. Trubenova, in:, Proceedings of the Genetic and Evolutionary Computation Conference 2016 , ACM, 2016, pp. 1163–1170.
[Published Version] View | Files available | DOI | WoS
 
2016 | Published | Journal Article | IST-REx-ID: 1358 | OA
Intrinsic limits to gene regulation by global crosstalk
T. Friedlander, R. Prizak, C.C. Guet, N.H. Barton, G. Tkačik, Nature Communications 7 (2016).
[Published Version] View | Files available | DOI | WoS
 
2016 | Published | Journal Article | IST-REx-ID: 1359 | OA
The effect of gene interactions on the long-term response to selection
T. Paixao, N.H. Barton, PNAS 113 (2016) 4422–4427.
[Published Version] View | DOI | Download Published Version (ext.) | WoS | PubMed | Europe PMC
 
2016 | Published | Journal Article | IST-REx-ID: 1427 | OA
Epistatic interactions in the arabinose cis-regulatory element
M. Lagator, C. Igler, A. Moreno, C.C. Guet, J.P. Bollback, Molecular Biology and Evolution 33 (2016) 761–769.
[Published Version] View | Files available | DOI | WoS
 
2016 | Published | Conference Paper | IST-REx-ID: 1524 | OA
Efficient reduction of kappa models by static inspection of the rule-set
A. Beica, C.C. Guet, T. Petrov, in:, Springer, 2016, pp. 173–191.
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 
2016 | Published | Journal Article | IST-REx-ID: 5749 | OA
Adaptation to parasites and costs of parasite resistance in mutator and nonmutator bacteria
S. Wielgoss, T. Bergmiller, A.M. Bischofberger, A.R. Hall, Molecular Biology and Evolution 33 (2016) 770–782.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2016 | Published | Journal Article | IST-REx-ID: 1008
An orthogonal permease–inducer–repressor feedback loop shows bistability
R. Gnügge, L. Dharmarajan, M. Lang, J. Stelling, ACS Synthetic Biology 5 (2016) 1098–1107.
View | DOI | WoS
 
2016 | Research Data Reference | IST-REx-ID: 9873
Quantification of the growth rate reduction as a consequence of age-specific mortality
A. Boehm, M. Arnoldini, T. Bergmiller, T. Röösli, C. Bigosch, M. Ackermann, (2016).
[Published Version] View | Files available | DOI
 
2016 | Published | Journal Article | IST-REx-ID: 1170 | OA
Modular parameter identification of biomolecular networks
M. Lang, J. Stelling, SIAM Journal on Scientific Computing 38 (2016) B988–B1008.
[Submitted Version] View | Files available | DOI | WoS
 
2015 | Published | Conference Paper | IST-REx-ID: 1430 | OA
First steps towards a runtime comparison of natural and artificial evolution
T. Paixao, D. Sudholt, J. Heredia, B. Trubenova, in:, Proceedings of the 2015 Annual Conference on Genetic and Evolutionary Computation, ACM, 2015, pp. 1455–1462.
[Preprint] View | DOI | Download Preprint (ext.) | WoS | arXiv
 
2015 | Research Data Reference | IST-REx-ID: 9712
Other fitness models for comparison & for interacting TFBSs
M. Tugrul, T. Paixao, N.H. Barton, G. Tkačik, (2015).
[Published Version] View | Files available | DOI
 
2015 | Research Data Reference | IST-REx-ID: 9719 | OA
Data from: Adaptation to parasites and costs of parasite resistance in mutator and non-mutator bacteria
S. Wielgoss, T. Bergmiller, A.M. Bischofberger, A.R. Hall, (2015).
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
earlier version | 2015 | Published | Conference Paper | IST-REx-ID: 1835 | OA
Model checking gene regulatory networks
M. Giacobbe, C.C. Guet, A. Gupta, T.A. Henzinger, T. Paixao, T. Petrov, 9035 (2015) 469–483.
[Preprint] View | Files available | DOI | Download Preprint (ext.) | arXiv
 
2015 | Published | Journal Article | IST-REx-ID: 1840 | OA
Optimal Kullback-Leibler aggregation via information bottleneck
B. Geiger, T. Petrov, G. Kubin, H. Koeppl, IEEE Transactions on Automatic Control 60 (2015) 1010–1022.
[Preprint] View | DOI | Download Preprint (ext.) | WoS | arXiv
 
2015 | Published | Journal Article | IST-REx-ID: 1542 | OA
Toward a unifying framework for evolutionary processes
T. Paixao, G. Badkobeh, N.H. Barton, D. Çörüş, D. Dang, T. Friedrich, P. Lehre, D. Sudholt, A. Sutton, B. Trubenova, Journal of Theoretical Biology 383 (2015) 28–43.
[Published Version] View | Files available | DOI | WoS
 
2015 | Published | Journal Article | IST-REx-ID: 1666 | OA
Dynamics of transcription factor binding site evolution
M. Tugrul, T. Paixao, N.H. Barton, G. Tkačik, PLoS Genetics 11 (2015).
[Published Version] View | Files available | DOI | WoS
 

Search

Filter Publications

Display / Sort

Export / Embed