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193 Publications
2016 | Published | Journal Article | IST-REx-ID: 1242 | 
Extending the dynamic range of transcription factor action by translational regulation
T.R. Sokolowski, A. Walczak, W. Bialek, G. Tkačik, Physical Review E Statistical Nonlinear and Soft Matter Physics 93 (2016).
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T.R. Sokolowski, A. Walczak, W. Bialek, G. Tkačik, Physical Review E Statistical Nonlinear and Soft Matter Physics 93 (2016).
2016 | Research Data Reference | IST-REx-ID: 9870
Computation of positional information in an Ising model
P. Hillenbrand, U. Gerland, G. Tkačik, (2016).
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P. Hillenbrand, U. Gerland, G. Tkačik, (2016).
2016 | Research Data Reference | IST-REx-ID: 9869
Error bound on an estimator of position
P. Hillenbrand, U. Gerland, G. Tkačik, (2016).
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P. Hillenbrand, U. Gerland, G. Tkačik, (2016).
2016 | Research Data Reference | IST-REx-ID: 9871
Computation of positional information in a discrete morphogen field
P. Hillenbrand, U. Gerland, G. Tkačik, (2016).
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P. Hillenbrand, U. Gerland, G. Tkačik, (2016).
2016 | Published | Journal Article | IST-REx-ID: 1394 |
Growth against entropy in bacterial metabolism: the phenotypic trade-off behind empirical growth rate distributions in E. coli
D. De Martino, F. Capuani, A. De Martino, Physical Biology 13 (2016).
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D. De Martino, F. Capuani, A. De Martino, Physical Biology 13 (2016).
2016 | Published | Journal Article | IST-REx-ID: 1188 |
Asymptotic analysis of noisy fitness maximization, applied to metabolism & growth
D. De Martino, D. Masoero, Journal of Statistical Mechanics: Theory and Experiment 2016 (2016).
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D. De Martino, D. Masoero, Journal of Statistical Mechanics: Theory and Experiment 2016 (2016).
2016 | Published | Conference Paper | IST-REx-ID: 1105
Estimating nonlinear neural response functions using GP priors and Kronecker methods
Savin, Cristina, Estimating nonlinear neural response functions using GP priors and Kronecker methods. 29. 2016
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Savin, Cristina, Estimating nonlinear neural response functions using GP priors and Kronecker methods. 29. 2016
2016 | Published | Conference Paper | IST-REx-ID: 948
Neurons equipped with intrinsic plasticity learn stimulus intensity statistics
Monk, Travis, Neurons equipped with intrinsic plasticity learn stimulus intensity statistics. 29. 2016
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Monk, Travis, Neurons equipped with intrinsic plasticity learn stimulus intensity statistics. 29. 2016
2016 | Published | Journal Article | IST-REx-ID: 1485 |
Genome-scale estimate of the metabolic turnover of E. Coli from the energy balance analysis
De Martino, Daniele, Genome-scale estimate of the metabolic turnover of E. Coli from the energy balance analysis. Physical Biology 13 (1). 2016
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De Martino, Daniele, Genome-scale estimate of the metabolic turnover of E. Coli from the energy balance analysis. Physical Biology 13 (1). 2016
2016 | Published | Conference Paper | IST-REx-ID: 8094 |
Self-organized control of an tendon driven arm by differential extrinsic plasticity
Martius, Georg S, Self-organized control of an tendon driven arm by differential extrinsic plasticity. 15th International Conference on the Synthesis and Simulation of Living Systems 28. 2016
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Martius, Georg S, Self-organized control of an tendon driven arm by differential extrinsic plasticity. 15th International Conference on the Synthesis and Simulation of Living Systems 28. 2016
2016 | Published | Conference Paper | IST-REx-ID: 1320
Scale-invariant systems realize nonlinear differential operators
M. Lang, E. Sontag, in:, IEEE, 2016.
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M. Lang, E. Sontag, in:, IEEE, 2016.
2016 | Published | Journal Article | IST-REx-ID: 1420 |
A general approximation for the dynamics of quantitative traits
K. Bodova, G. Tkačik, N.H. Barton, Genetics 202 (2016) 1523–1548.
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| arXiv
K. Bodova, G. Tkačik, N.H. Barton, Genetics 202 (2016) 1523–1548.
2016 | Published | Journal Article | IST-REx-ID: 1358 |
Intrinsic limits to gene regulation by global crosstalk
T. Friedlander, R. Prizak, C.C. Guet, N.H. Barton, G. Tkačik, Nature Communications 7 (2016).
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T. Friedlander, R. Prizak, C.C. Guet, N.H. Barton, G. Tkačik, Nature Communications 7 (2016).
2016 | Published | Journal Article | IST-REx-ID: 1148
Adaptive moment closure for parameter inference of biochemical reaction networks
C. Schilling, S. Bogomolov, T.A. Henzinger, A. Podelski, J. Ruess, Biosystems 149 (2016) 15–25.
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C. Schilling, S. Bogomolov, T.A. Henzinger, A. Podelski, J. Ruess, Biosystems 149 (2016) 15–25.
2016 | Published | Journal Article | IST-REx-ID: 1197 |
Error-robust modes of the retinal population code
J. Prentice, O. Marre, M. Ioffe, A. Loback, G. Tkačik, M. Berry, PLoS Computational Biology 12 (2016).
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J. Prentice, O. Marre, M. Ioffe, A. Loback, G. Tkačik, M. Berry, PLoS Computational Biology 12 (2016).
2016 | Published | Journal Article | IST-REx-ID: 1248 |
Information processing in living systems
G. Tkačik, W. Bialek, Annual Review of Condensed Matter Physics 7 (2016) 89–117.
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G. Tkačik, W. Bialek, Annual Review of Condensed Matter Physics 7 (2016) 89–117.
2016 | Published | Conference Paper | IST-REx-ID: 1082 |
Relevant sparse codes with variational information bottleneck
M.J. Chalk, O. Marre, G. Tkačik, in:, Neural Information Processing Systems Foundation, 2016, pp. 1965–1973.
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| arXiv
M.J. Chalk, O. Marre, G. Tkačik, in:, Neural Information Processing Systems Foundation, 2016, pp. 1965–1973.
2015 | Published | Journal Article | IST-REx-ID: 1861
Moment-based methods for parameter inference and experiment design for stochastic biochemical reaction networks
J. Ruess, J. Lygeros, ACM Transactions on Modeling and Computer Simulation 25 (2015).
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J. Ruess, J. Lygeros, ACM Transactions on Modeling and Computer Simulation 25 (2015).
2015 | Published | Journal Article | IST-REx-ID: 1885 |
Positional information, positional error, and readout precision in morphogenesis: A mathematical framework
G. Tkačik, J. Dubuis, M. Petkova, T. Gregor, Genetics 199 (2015) 39–59.
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G. Tkačik, J. Dubuis, M. Petkova, T. Gregor, Genetics 199 (2015) 39–59.
2015 | Published | Journal Article | IST-REx-ID: 1940 |
Optimizing information flow in small genetic networks. IV. Spatial coupling
T.R. Sokolowski, G. Tkačik, Physical Review E Statistical Nonlinear and Soft Matter Physics 91 (2015).
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T.R. Sokolowski, G. Tkačik, Physical Review E Statistical Nonlinear and Soft Matter Physics 91 (2015).