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202 Publications

2015 | Published | Journal Article | IST-REx-ID: 1576 | OA
Cepeda Humerez SA, Rieckh G, Tkačik G. 2015. Stochastic proofreading mechanism alleviates crosstalk in transcriptional regulation. Physical Review Letters. 115(24), 248101.
[Preprint] View | Files available | DOI | Download Preprint (ext.) | WoS | arXiv
 
2015 | Published | Journal Article | IST-REx-ID: 1655 | OA
Martius GS, Olbrich E. 2015. Quantifying emergent behavior of autonomous robots. Entropy. 17(10), 7266–7297.
[Published Version] View | Files available | DOI | WoS
 
2015 | Published | Conference Paper | IST-REx-ID: 1658
Bogomolov S, Henzinger TA, Podelski A, Ruess J, Schilling C. 2015. Adaptive moment closure for parameter inference of biochemical reaction networks. 9308, 77–89.
View | Files available | DOI | WoS
 
2015 | Published | Journal Article | IST-REx-ID: 1666 | OA
Tugrul M, Paixao T, Barton NH, Tkačik G. 2015. Dynamics of transcription factor binding site evolution. PLoS Genetics. 11(11).
[Published Version] View | Files available | DOI | WoS
 
2015 | Published | Journal Article | IST-REx-ID: 1697 | OA
Marre O, Botella Soler V, Simmons K, Mora T, Tkačik G, Berry M. 2015. High accuracy decoding of dynamical motion from a large retinal population. PLoS Computational Biology. 11(7), e1004304.
[Published Version] View | Files available | DOI | WoS
 
2015 | Published | Journal Article | IST-REx-ID: 1701 | OA
Tkačik G, Mora T, Marre O, Amodei D, Palmer S, Berry Ii M, Bialek W. 2015. Thermodynamics and signatures of criticality in a network of neurons. PNAS. 112(37), 11508–11513.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS | PubMed | Europe PMC
 
2015 | Research Data Reference | IST-REx-ID: 9712
Tugrul M, Paixao T, Barton NH, Tkačik G. 2015. Other fitness models for comparison & for interacting TFBSs, Public Library of Science, 10.1371/journal.pgen.1005639.s001.
[Published Version] View | Files available | DOI
 
2015 | Research Data Reference | IST-REx-ID: 9718
Friedlander T, Mayo AE, Tlusty T, Alon U. 2015. Supporting information text, Public Library of Science, 10.1371/journal.pcbi.1004055.s001.
[Published Version] View | Files available | DOI
 
2015 | Research Data Reference | IST-REx-ID: 9773
Friedlander T, Mayo AE, Tlusty T, Alon U. 2015. Evolutionary simulation code, Public Library of Science, 10.1371/journal.pcbi.1004055.s002.
[Published Version] View | Files available | DOI
 
2014 | Published | Journal Article | IST-REx-ID: 3263 | OA
Tkačik G, Ghosh A, Schneidman E, Segev R. 2014. Adaptation to changes in higher-order stimulus statistics in the salamander retina. PLoS One. 9(1), e85841.
[Published Version] View | Files available | DOI | WoS
 
2014 | Published | Journal Article | IST-REx-ID: 2028 | OA
Bodova K, Paydarfar D, Forger D. 2014. Characterizing spiking in noisy type II neurons. Journal of Theoretical Biology. 365, 40–54.
[Published Version] View | Files available | DOI | WoS
 
2014 | Published | Journal Article | IST-REx-ID: 1886 | OA
Hermundstad A, Briguglio J, Conte M, Victor J, Balasubramanian V, Tkačik G. 2014. Variance predicts salience in central sensory processing. eLife. (November), e03722.
[Published Version] View | Files available | DOI | WoS
 
2014 | Published | Journal Article | IST-REx-ID: 1896 | OA
Kollár R, Bodova K, Nosek J, Tomáška Ľ. 2014. Mathematical model of alternative mechanism of telomere length maintenance. Physical Review E Statistical Nonlinear and Soft Matter Physics. 89(3), 032701.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS | arXiv
 
2014 | Published | Journal Article | IST-REx-ID: 1909 | OA
Ezard T, Prizak R, Hoyle R. 2014. The fitness costs of adaptation via phenotypic plasticity and maternal effects. Functional Ecology. 28(3), 693–701.
[Published Version] View | Files available | DOI | WoS
 
2014 | Published | Journal Article | IST-REx-ID: 1928
Humplik J, Hill A, Nowak M. 2014. Evolutionary dynamics of infectious diseases in finite populations. Journal of Theoretical Biology. 360, 149–162.
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2014 | Published | Journal Article | IST-REx-ID: 1931 | OA
Savin C, Triesch J. 2014. Emergence of task-dependent representations in working memory circuits. Frontiers in Computational Neuroscience. 8(MAY), 57.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS
 
2014 | Published | Journal Article | IST-REx-ID: 2183 | OA
Botella Soler V, Glendinning P. 2014. Hierarchy and polysynchrony in an adaptive network . Physical Review E Statistical Nonlinear and Soft Matter Physics. 89(6), 062809.
[Preprint] View | DOI | Download Preprint (ext.) | WoS | arXiv
 
2014 | Published | Journal Article | IST-REx-ID: 2231 | OA
Rieckh G, Tkačik G. 2014. Noise and information transmission in promoters with multiple internal states. Biophysical Journal. 106(5), 1194–1204.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS | PubMed | Europe PMC
 
2014 | Published | Journal Article | IST-REx-ID: 2257 | OA
Tkačik G, Marre O, Amodei D, Schneidman E, Bialek W, Berry M. 2014. Searching for collective behavior in a large network of sensory neurons. PLoS Computational Biology. 10(1), e1003408.
[Published Version] View | Files available | DOI | WoS
 
2014 | Published | Conference Paper | IST-REx-ID: 1708 | OA
Savin C, Denève S. 2014. Spatio-temporal representations of uncertainty in spiking neural networks. NIPS: Neural Information Processing Systems vol. 27, 2024–2032.
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