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Gasper Tkacik

Sofia Backlund

Alexis Benichou

Céline Camila Coraly Bräutigam

Athina Diakogianni

Krishnan Iyer

Reka Borbely

Björn Kscheschinski

Teemu Kuosmanen

Gabor Lengyel

Ekaterina Maksimova

Elia Mascolo

Pablo Mateu Hoyos

Anuj Patel

Tetiana Rabiichuk

Julian Renaud

Natalia Ruzickova

Puzhen Xia

Bahti Zakirov

Alex Chen Yi Zhang

Tereza Zuskinova

Gabriel Mitchell

Anna Andersson

Katarina Bodova

Vicent Botella Soler

David Brückner

Sarah Cepeda Humerez

Remy Chait

Matthew Chalk

Heloisa Chiossi

Daniele De Martino

Tamar Friedlander

Mantas Gabrielaitis

Aditya Gilra

Rok Grah

Michal Hledik

Jan Humplik

Bor Kavcic

Moritz Lang

Anna Levina (Martius)

Fabrizio Lombardi

Georg Martius

Roshan Prizak

Simon Rella

Georg Rieckh

Jakob Ruess

Cristina Savin

Sreyam Sengupta

Thomas Sokolowski



204 Publications

2015 | Published | Journal Article | IST-REx-ID: 1666 | OA
Dynamics of transcription factor binding site evolution
M. Tugrul, T. Paixao, N.H. Barton, G. Tkačik, PLoS Genetics 11 (2015).
[Published Version] View | Files available | DOI | WoS
 
2015 | Published | Journal Article | IST-REx-ID: 1697 | OA
High accuracy decoding of dynamical motion from a large retinal population
O. Marre, V. Botella Soler, K. Simmons, T. Mora, G. Tkačik, M. Berry, PLoS Computational Biology 11 (2015).
[Published Version] View | Files available | DOI | WoS
 
2015 | Published | Journal Article | IST-REx-ID: 1701 | OA
Thermodynamics and signatures of criticality in a network of neurons
G. Tkačik, T. Mora, O. Marre, D. Amodei, S. Palmer, M. Berry Ii, W. Bialek, PNAS 112 (2015) 11508–11513.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS | PubMed | Europe PMC
 
2015 | Published | Journal Article | IST-REx-ID: 1861
Moment-based methods for parameter inference and experiment design for stochastic biochemical reaction networks
J. Ruess, J. Lygeros, ACM Transactions on Modeling and Computer Simulation 25 (2015).
View | DOI | WoS
 
2015 | Published | Journal Article | IST-REx-ID: 1885 | OA
Positional information, positional error, and readout precision in morphogenesis: A mathematical framework
G. Tkačik, J. Dubuis, M. Petkova, T. Gregor, Genetics 199 (2015) 39–59.
[Preprint] View | DOI | Download Preprint (ext.) | WoS | arXiv
 
2015 | Published | Journal Article | IST-REx-ID: 1940 | OA
Optimizing information flow in small genetic networks. IV. Spatial coupling
T.R. Sokolowski, G. Tkačik, Physical Review E Statistical Nonlinear and Soft Matter Physics 91 (2015).
[Preprint] View | DOI | Download Preprint (ext.) | WoS | arXiv
 
2015 | Published | Journal Article | IST-REx-ID: 10794 | OA
Bayesian inference for stochastic individual-based models of ecological systems: a pest control simulation study
F. Parise, J. Lygeros, J. Ruess, Frontiers in Environmental Science 3 (2015).
[Published Version] View | Files available | DOI
 
2015 | Published | Journal Article | IST-REx-ID: 1827 | OA
Evolution of bow-tie architectures in biology
T. Friedlander, A. Mayo, T. Tlusty, U. Alon, PLoS Computational Biology 11 (2015).
[Published Version] View | Files available | DOI | WoS
 
2015 | Research Data Reference | IST-REx-ID: 9712
Other fitness models for comparison & for interacting TFBSs
M. Tugrul, T. Paixao, N.H. Barton, G. Tkačik, (2015).
[Published Version] View | Files available | DOI
 
2015 | Research Data Reference | IST-REx-ID: 9718
Supporting information text
T. Friedlander, A.E. Mayo, T. Tlusty, U. Alon, (2015).
[Published Version] View | Files available | DOI
 
2015 | Research Data Reference | IST-REx-ID: 9773
Evolutionary simulation code
T. Friedlander, A.E. Mayo, T. Tlusty, U. Alon, (2015).
[Published Version] View | Files available | DOI
 
2014 | Published | Journal Article | IST-REx-ID: 2231 | OA
Noise and information transmission in promoters with multiple internal states
G. Rieckh, G. Tkačik, Biophysical Journal 106 (2014) 1194–1204.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS | PubMed | Europe PMC
 
2014 | Published | Journal Article | IST-REx-ID: 2257 | OA
Searching for collective behavior in a large network of sensory neurons
G. Tkačik, O. Marre, D. Amodei, E. Schneidman, W. Bialek, M. Berry, PLoS Computational Biology 10 (2014).
[Published Version] View | Files available | DOI | WoS
 
2014 | Published | Journal Article | IST-REx-ID: 2183 | OA
Hierarchy and polysynchrony in an adaptive network
V. Botella Soler, P. Glendinning, Physical Review E Statistical Nonlinear and Soft Matter Physics 89 (2014).
[Preprint] View | DOI | Download Preprint (ext.) | WoS | arXiv
 
2014 | Published | Conference Paper | IST-REx-ID: 1708 | OA
Spatio-temporal representations of uncertainty in spiking neural networks
C. Savin, S. Denève, in:, Neural Information Processing Systems Foundation, 2014, pp. 2024–2032.
View | Download None (ext.)
 
2014 | Published | Journal Article | IST-REx-ID: 1886 | OA
Variance predicts salience in central sensory processing
A. Hermundstad, J. Briguglio, M. Conte, J. Victor, V. Balasubramanian, G. Tkačik, ELife (2014).
[Published Version] View | Files available | DOI | WoS
 
2014 | Published | Journal Article | IST-REx-ID: 1896 | OA
Mathematical model of alternative mechanism of telomere length maintenance
R. Kollár, K. Bodova, J. Nosek, Ľ. Tomáška, Physical Review E Statistical Nonlinear and Soft Matter Physics 89 (2014).
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS | arXiv
 
2014 | Published | Journal Article | IST-REx-ID: 1909 | OA
The fitness costs of adaptation via phenotypic plasticity and maternal effects
T. Ezard, R. Prizak, R. Hoyle, Functional Ecology 28 (2014) 693–701.
[Published Version] View | Files available | DOI | WoS
 
2014 | Published | Journal Article | IST-REx-ID: 1928
Evolutionary dynamics of infectious diseases in finite populations
J. Humplik, A. Hill, M. Nowak, Journal of Theoretical Biology 360 (2014) 149–162.
View | DOI | WoS
 
2014 | Published | Journal Article | IST-REx-ID: 1931 | OA
Emergence of task-dependent representations in working memory circuits
C. Savin, J. Triesch, Frontiers in Computational Neuroscience 8 (2014).
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS
 

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