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402 Publications

2015 | Conference Paper | IST-REx-ID: 1512 | OA
Bounding Helly numbers via Betti numbers
X. Goaoc, P. Paták, Z. Patakova, M. Tancer, U. Wagner, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2015, pp. 507–521.
[Submitted Version] View | Files available | DOI
 
2014 | Journal Article | IST-REx-ID: 1895 | OA
Functional deficiency of MHC class i enhances LTP and abolishes LTD in the nucleus accumbens of mice
M. Edamura, G. Murakami, H. Meng, M. Itakura, R. Shigemoto, A. Fukuda, D. Nakahara, PLoS One 9 (2014).
[Published Version] View | Files available | DOI
 
2014 | Journal Article | IST-REx-ID: 1893 | OA
SAC phosphoinositide phosphatases at the tonoplast mediate vacuolar function in Arabidopsis
P. Marhavá, S. Hirsch, E. Feraru, R. Tejos, R. Van Wijk, T. Viaene, M. Heilmann, J. Lerche, R. De Rycke, M. Feraru, P. Grones, M. Van Montagu, I. Heilmann, T. Munnik, J. Friml, PNAS 111 (2014) 2818–2823.
[Submitted Version] View | DOI | Download Submitted Version (ext.)
 
2014 | Journal Article | IST-REx-ID: 1898
Ultrafast action potentials mediate kilohertz signaling at a central synapse
A. Ritzau Jost, I. Delvendahl, A. Rings, N. Byczkowicz, H. Harada, R. Shigemoto, J. Hirrlinger, J. Eilers, S. Hallermann, Neuron 84 (2014) 152–163.
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2014 | Journal Article | IST-REx-ID: 1910
Langerhans cell maturation is accompanied by induction of N-cadherin and the transcriptional regulators of epithelial-mesenchymal transition ZEB1/2
S. Konradi, N. Yasmin, D. Haslwanter, M. Weber, B. Gesslbauer, M.K. Sixt, H. Strobl, European Journal of Immunology 44 (2014) 553–560.
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2014 | Journal Article | IST-REx-ID: 1920 | OA
Distinct cerebellar engrams in short-term and long-term motor learning
W. Wang, K. Nakadate, M. Masugi Tokita, F. Shutoh, W. Aziz, E. Tarusawa, A. Lörincz, E. Molnár, S. Kesaf, Y. Li, Y. Fukazawa, S. Nagao, R. Shigemoto, PNAS 111 (2014) E188–E193.
[Submitted Version] View | DOI | Download Submitted Version (ext.)
 
2014 | Journal Article | IST-REx-ID: 2028 | OA
Characterizing spiking in noisy type II neurons
K. Bodova, D. Paydarfar, D. Forger, Journal of Theoretical Biology 365 (2014) 40–54.
[Published Version] View | Files available | DOI
 
2014 | Journal Article | IST-REx-ID: 2042 | OA
Motif depletion in bacteriophages infecting hosts with CRISPR systems
A. Kupczok, J.P. Bollback, BMC Genomics 15 (2014).
[Published Version] View | Files available | DOI
 
2014 | Journal Article | IST-REx-ID: 2064 | OA
Target- and input-dependent organization of AMPA and NMDA receptors in synaptic connections of the cochlear nucleus
M. Rubio, Y. Fukazawa, N. Kamasawa, C. Clarkson, E. Molnár, R. Shigemoto, Journal of Comparative Neurology 522 (2014) 4023–4042.
[Submitted Version] View | DOI | Download Submitted Version (ext.)
 
2014 | Journal Article | IST-REx-ID: 2242
A miR-155-dependent microRNA hierarchy in dendritic cell maturation and macrophage activation
A. Dueck, A. Eichner, M.K. Sixt, G. Meister, FEBS Letters 588 (2014) 632–640.
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2014 | Journal Article | IST-REx-ID: 2252
Genetic background alters dominance relationships between mat alleles in the ciliate Tetrahymena Thermophila
S. Phadke, T. Paixao, T. Pham, S. Pham, R. Zufall, Journal of Heredity 105 (2014) 130–135.
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2014 | Journal Article | IST-REx-ID: 3263 | OA
Adaptation to changes in higher-order stimulus statistics in the salamander retina
G. Tkačik, A. Ghosh, E. Schneidman, R. Segev, PLoS One 9 (2014).
[Published Version] View | Files available | DOI
 
2014 | Book Chapter | IST-REx-ID: 10817
Notes on the simplification of the Morse-Smale complex
D. Günther, J. Reininghaus, H.-P. Seidel, T. Weinkauf, in:, P.-T. Bremer, I. Hotz, V. Pascucci, R. Peikert (Eds.), Topological Methods in Data Analysis and Visualization III., Springer Nature, Cham, 2014, pp. 135–150.
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2014 | Thesis | IST-REx-ID: 1402
Molecular mechanisms of patterning and subcellular trafficking in Arabidopsis thaliana
P. Marhavá, Molecular Mechanisms of Patterning and Subcellular Trafficking in Arabidopsis Thaliana, Institute of Science and Technology Austria, 2014.
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2014 | Conference Paper | IST-REx-ID: 2159 | OA
Eliminating Tverberg points, I. An analogue of the Whitney trick
I. Mabillard, U. Wagner, in:, Proceedings of the Annual Symposium on Computational Geometry, ACM, 2014, pp. 171–180.
[Submitted Version] View | Files available | DOI
 
2014 | Journal Article | IST-REx-ID: 2023 | OA
Habitat heterogeneities versus spatial type frequency variances as driving forces of dispersal evolution
S. Novak, Ecology and Evolution 4 (2014) 4589–4597.
[Published Version] View | Files available | DOI
 
2013 | Conference Paper | IST-REx-ID: 2301
P: Safe asynchronous event-driven programming
A. Desai, V. Gupta, E. Jackson, S. Qadeer, S. Rajamani, D. Zufferey, in:, Proceedings of the 34th ACM SIGPLAN Conference on Programming Language Design and Implementation, ACM, 2013, pp. 321–331.
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2013 | Journal Article | IST-REx-ID: 2303
Dissection of gene function at clonal level using mosaic analysis with double markers
S. Hippenmeyer, Frontiers in Biology 8 (2013) 557–568.
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2013 | Conference Paper | IST-REx-ID: 2520 | OA
The supervised IBP: Neighbourhood preserving infinite latent feature models
N. Quadrianto, V. Sharmanska, D. Knowles, Z. Ghahramani, in:, Proceedings of the 29th Conference Uncertainty in Artificial Intelligence, AUAI Press, 2013, pp. 527–536.
[Submitted Version] View | Files available
 
2013 | Journal Article | IST-REx-ID: 2810 | OA
Environmental dependence of genetic constraint
M. de Vos, F. Poelwijk, N. Battich, J. Ndika, S. Tans, PLoS Genetics 9 (2013).
[Published Version] View | Files available | DOI
 
2013 | Journal Article | IST-REx-ID: 2813 | OA
Elasto-inertial turbulence
D. Samanta, Y. Dubief, M. Holzner, C. Schäfer, A. Morozov, C. Wagner, B. Hof, PNAS 110 (2013) 10557–10562.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
2013 | Journal Article | IST-REx-ID: 2821 | OA
A major facilitator superfamily transporter plays a dual role in polar auxin transport and drought stress tolerance in Arabidopsis
E. Remy, T. Cabrito, P. Baster, R. Batista, M. Teixeira, J. Friml, I. Sá Correia, P. Duque, Plant Cell 25 (2013) 901–926.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
2013 | Journal Article | IST-REx-ID: 2823
Post-fire recovery of revegetated woodland communities in south-eastern Australia
M. Pickup, S. Wilson, D. Freudenberger, N. Nicholls, L. Gould, S. Hnatiuk, J. Delandre, Austral Ecology 38 (2013) 300–312.
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2013 | Journal Article | IST-REx-ID: 2855 | OA
Mosaic analysis with double markers reveals cell type specific paternal growth dominance
S. Hippenmeyer, R. Johnson, L. Luo, Cell Reports 3 (2013) 960–967.
[Published Version] View | Files available | DOI
 
2013 | Journal Article | IST-REx-ID: 511 | OA
Regulation of auxin homeostasis and gradients in Arabidopsis roots through the formation of the indole-3-acetic acid catabolite 2-oxindole-3-acetic acid
A. Pěnčík, B. Simonovik, S. Petersson, E. Henyková, S. Simon, K. Greenham, Y. Zhang, M. Kowalczyk, M. Estelle, E. Zažímalová, O. Novák, G. Sandberg, K. Ljung, Plant Cell 25 (2013) 3858–3870.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
2013 | Journal Article | IST-REx-ID: 516 | OA
A map of cell type‐specific auxin responses
B. Bargmann, S. Vanneste, G. Krouk, T. Nawy, I. Efroni, E. Shani, G. Choe, J. Friml, D. Bergmann, M. Estelle, K. Birnbaum, Molecular Systems Biology 9 (2013).
[Published Version] View | Files available | DOI
 
2013 | Journal Article | IST-REx-ID: 522
Thymic medullar conduits-associated podoplanin promotes natural regulatory T cells
E. Fuertbauer, J. Zaujec, P. Uhrin, I. Raab, M. Weber, H. Schachner, M. Bauer, G. Schütz, B. Binder, M.K. Sixt, D. Kerjaschki, H. Stockinger, Immunology Letters 154 (2013) 31–41.
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2013 | Technical Report | IST-REx-ID: 5399 | OA
TTP: Tool for Tumor Progression
J. Reiter, I. Bozic, K. Chatterjee, M. Nowak, TTP: Tool for Tumor Progression, IST Austria, 2013.
[Published Version] View | Files available | DOI
 
2013 | Journal Article | IST-REx-ID: 2944
Approximate Bayesian computation for modular inference problems with many parameters: the example of migration rates.
S. Aeschbacher, A. Futschik, M. Beaumont, Molecular Ecology 22 (2013) 987–1002.
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2013 | Thesis | IST-REx-ID: 1405 | OA
Analysis of dynamic message passing programs
D. Zufferey, Analysis of Dynamic Message Passing Programs, Institute of Science and Technology Austria, 2013.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
2013 | Journal Article | IST-REx-ID: 2858 | OA
The effect of one additional driver mutation on tumor progression
J. Reiter, I. Božić, B. Allen, K. Chatterjee, M. Nowak, Evolutionary Applications 6 (2013) 34–45.
[Published Version] View | Files available | DOI
 
2013 | Conference Paper | IST-REx-ID: 2000 | OA
TTP: Tool for tumor progression
J. Reiter, I. Božić, K. Chatterjee, M. Nowak, in:, Proceedings of 25th Int. Conf. on Computer Aided Verification, Springer, 2013, pp. 101–106.
[Preprint] View | Files available | DOI | Download Preprint (ext.) | arXiv
 
2012 | Journal Article | IST-REx-ID: 2302
The propagation approach for computing biochemical reaction networks
T.A. Henzinger, M. Mateescu, IEEE ACM Transactions on Computational Biology and Bioinformatics 10 (2012) 310–322.
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2012 | Journal Article | IST-REx-ID: 2958 | OA
Hippocampal place cells can encode multiple trial-dependent features through rate remapping
K. Allen, J.N. Rawlins, D. Bannerman, J.L. Csicsvari, Journal of Neuroscience 32 (2012) 14752–14766.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
2012 | Journal Article | IST-REx-ID: 2969 | OA
Miniature IPSCs in hippocampal granule cells are triggered by voltage-gated Ca^(2+) channels via microdomain coupling
S. Goswami, I. Bucurenciu, P.M. Jonas, Journal of Neuroscience 32 (2012) 14294–14304.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
2012 | Journal Article | IST-REx-ID: 3121 | OA
Coactivation of multiple tightly coupled calcium channels triggers spontaneous release of GABA
C. Williams, W. Chen, C. Lee, D. Yaeger, N. Vyleta, S. Smith, Nature Neuroscience 15 (2012) 1195–1197.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
2012 | Journal Article | IST-REx-ID: 3120 | OA
Fano 3 folds in codimension 4 Tom and Jerry Part I
G. Brown, M. Kerber, M. Reid, Compositio Mathematica 148 (2012) 1171–1194.
[Preprint] View | DOI | Download Preprint (ext.)
 
2012 | Research Data Reference | IST-REx-ID: 9758 | OA
Data from: Approximate Bayesian computation for modular inference problems with many parameters: the example of migration rates
S. Aeschbacher, A. Futschik, M. Beaumont, (2012).
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
2012 | Journal Article | IST-REx-ID: 3157 | OA
The molecular evolution of acquired resistance to targeted EGFR blockade in colorectal cancers
L. Diaz Jr, R. Williams, J. Wu, I. Kinde, J. Hecht, J. Berlin, B. Allen, I. Božić, J. Reiter, M. Nowak, K. Kinzler, K. Oliner, B. Vogelstein, Nature 486 (2012) 537–540.
[Submitted Version] View | Files available | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
2011 | Conference Paper | IST-REx-ID: 3299 | OA
Propagation models for computing biochemical reaction networks
T.A. Henzinger, M. Mateescu, in:, Springer, 2011, pp. 1–3.
[Submitted Version] View | Files available | DOI
 
2011 | Journal Article | IST-REx-ID: 3399 | OA
Competition and opportunity shape the reproductive tactics of males in the ant Cardiocondyla obscurior
S. Cremer, A. Schrempf, J. Heinze, PLoS One 6 (2011).
[Published Version] View | Files available | DOI
 
2011 | Journal Article | IST-REx-ID: 6496 | OA
Noise underlies switching behavior of the bacterial flagellum
H. Park, P. Oikonomou, C.C. Guet, P. Cluzel, Biophysical Journal 101 (2011) 2336–2340.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
2011 | Thesis | IST-REx-ID: 3275 | OA
The role of chemotactic gradients in dendritic cell migration
K. Schumann, The Role of Chemotactic Gradients in Dendritic Cell Migration, Institute of Science and Technology Austria, 2011.
[Published Version] View | Files available
 
2010 | Journal Article | IST-REx-ID: 3783
Microsatelight – Pipeline to expedite microsatellite analysis
F. Palero, F. González Candelas, M. Pascual, Journal of Heredity 102 (2010) 247–249.
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2010 | Conference Paper | IST-REx-ID: 3839 | OA
Invariant and type inference for matrices
T.A. Henzinger, T. Hottelier, L. Kovács, A. Voronkov, in:, Springer, 2010, pp. 163–179.
[Submitted Version] View | Files available | DOI
 
2010 | Conference Paper | IST-REx-ID: 4378 | OA
Building a calculus of data structures
V. Kuncak, R. Piskac, P. Suter, T. Wies, in:, G. Barthe, M. Hermenegildo (Eds.), Springer, 2010, pp. 26–44.
[Submitted Version] View | DOI | Download Submitted Version (ext.)
 
2010 | Conference Paper | IST-REx-ID: 4396 | OA
Shape refinement through explicit heap analysis
D. Beyer, T.A. Henzinger, G. Théoduloz, D. Zufferey, in:, D. Rosenblum, G. Taenzer (Eds.), Springer, 2010, pp. 263–277.
[Submitted Version] View | Files available | DOI
 
2010 | Conference Paper | IST-REx-ID: 489 | OA
How do we remember the past in randomised strategies?
J. Cristau, C. David, F. Horn, in:, Proceedings of GandALF 2010, Open Publishing Association, 2010, pp. 30–39.
[Published Version] View | DOI | Download Published Version (ext.)
 
2010 | Journal Article | IST-REx-ID: 12199
Tapetal cell fate, lineage and proliferation in the Arabidopsis anther
X. Feng, H.G. Dickinson, Development 137 (2010) 2409–2416.
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2005 | Journal Article | IST-REx-ID: 9491 | OA
DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes
R.K. Tran, J.G. Henikoff, D. Zilberman, R.F. Ditt, S.E. Jacobsen, S. Henikoff, Current Biology 15 (2005) 154–159.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

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