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4969 Publications

2010 | Book Chapter | IST-REx-ID: 4392
Cerny, Pavol, et al. “Quantitative Simulation Games.” Time For Verification: Essays in Memory of Amir Pnueli, edited by Zohar Manna and Doron Peled, vol. 6200, Springer, 2010, pp. 42–60, doi:10.1007/978-3-642-13754-9_3.
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2010 | Conference Paper | IST-REx-ID: 4396 | OA
Beyer, Dirk, et al. Shape Refinement through Explicit Heap Analysis. Edited by David Rosenblum and Gabriele Taenzer, vol. 6013, Springer, 2010, pp. 263–77, doi:10.1007/978-3-642-12029-9_19.
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2010 | Journal Article | IST-REx-ID: 3867 | OA
Chatterjee, Krishnendu, et al. “Expressiveness and Closure Properties for Quantitative Languages.” Logical Methods in Computer Science, vol. 6, no. 3, International Federation of Computational Logic, 2010, pp. 1–23, doi:10.2168/LMCS-6(3:10)2010.
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2010 | Journal Article | IST-REx-ID: 474
Barton, Nicholas H., et al. “A New Model for Extinction and Recolonization in Two Dimensions: Quantifying Phylogeography.” Evolution, vol. 64, no. 9, Wiley-Blackwell, 2010, pp. 2701–15, doi:10.1111/j.1558-5646.2010.01019.x.
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2010 | Conference Paper | IST-REx-ID: 488 | OA
Alur, Rajeev, and Pavol Cerny. Expressiveness of Streaming String Transducers. Vol. 8, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 1–12, doi:10.4230/LIPIcs.FSTTCS.2010.1.
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2010 | Conference Paper | IST-REx-ID: 489 | OA
Cristau, Julien, et al. “How Do We Remember the Past in Randomised Strategies? .” Proceedings of GandALF 2010, vol. 25, Open Publishing Association, 2010, pp. 30–39, doi:10.4204/EPTCS.25.7.
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2010 | Journal Article | IST-REx-ID: 533
Hoenicke, Jochen, et al. “Doomed Program Points.” Formal Methods in System Design, vol. 37, no. 2–3, Springer, 2010, pp. 171–99, doi:10.1007/s10703-010-0102-0.
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2010 | Conference Paper | IST-REx-ID: 4393 | OA
Cerny, Pavol, et al. Simulation Distances. Vol. 6269, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp. 235–68, doi:10.1007/978-3-642-15375-4_18.
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2010 | Technical Report | IST-REx-ID: 5388 | OA
Chatterjee, Krishnendu, et al. Quantitative Synthesis for Concurrent Programs. IST Austria, 2010, doi:10.15479/AT:IST-2010-0004.
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2010 | Technical Report | IST-REx-ID: 5389 | OA
Cerny, Pavol, et al. Simulation Distances. IST Austria, 2010, doi:10.15479/AT:IST-2010-0003.
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2010 | Conference Paper | IST-REx-ID: 4390 | OA
Cerny, Pavol, et al. Model Checking of Linearizability of Concurrent List Implementations. Vol. 6174, Springer, 2010, pp. 465–79, doi:10.1007/978-3-642-14295-6_41.
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2010 | Conference Paper | IST-REx-ID: 4388 | OA
Chatterjee, Krishnendu, et al. GIST: A Solver for Probabilistic Games. Vol. 6174, Springer, 2010, pp. 665–69, doi:10.1007/978-3-642-14295-6_57.
[Submitted Version] View | Files available | DOI | arXiv
 
2010 | Technical Report | IST-REx-ID: 5391 | OA
Cerny, Pavol, et al. Model Checking of Linearizability of Concurrent List Implementations. IST Austria, 2010, doi:10.15479/AT:IST-2010-0001.
[Published Version] View | Files available | DOI
 
2010 | Technical Report | IST-REx-ID: 5390 | OA
Chatterjee, Krishnendu, and Nathanaël Fijalkow. Topological, Automata-Theoretic and Logical Characterization of Finitary Languages. IST Austria, 2010, doi:10.15479/AT:IST-2010-0002.
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2010 | Conference Paper | IST-REx-ID: 3857
Chatterjee, Krishnendu, and Thomas A. Henzinger. Probabilistic Automata on Infinite Words: Decidability and Undecidability Results. Vol. 6252, Springer, 2010, pp. 1–16, doi:10.1007/978-3-642-15643-4_1.
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2010 | Conference Paper | IST-REx-ID: 3855 | OA
Chatterjee, Krishnendu, et al. Qualitative Analysis of Partially-Observable Markov Decision Processes. Vol. 6281, Springer, 2010, pp. 258–69, doi:10.1007/978-3-642-15155-2_24.
[Submitted Version] View | Files available | DOI
 
2010 | Journal Article | IST-REx-ID: 9485 | OA
Zemach, Assaf, et al. “Local DNA Hypomethylation Activates Genes in Rice Endosperm.” Proceedings of the National Academy of Sciences, vol. 107, no. 43, National Academy of Sciences, 2010, pp. 18729–34, doi:10.1073/pnas.1009695107.
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2010 | Journal Article | IST-REx-ID: 9489 | OA
Zemach, Assaf, and Daniel Zilberman. “Evolution of Eukaryotic DNA Methylation and the Pursuit of Safer Sex.” Current Biology, vol. 20, no. 17, Elsevier, 2010, pp. R780–85, doi:10.1016/j.cub.2010.07.007.
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2010 | Journal Article | IST-REx-ID: 9452
Zemach, Assaf, et al. “Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation.” Science, vol. 328, no. 5980, American Association for the Advancement of Science, 2010, pp. 916–19, doi:10.1126/science.1186366.
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2010 | Journal Article | IST-REx-ID: 3779 | OA
Rosas, Ulises, et al. “Cryptic Variation between Species and the Basis of Hybrid Performance.” PLoS Biology, vol. 8, no. 7, e1000429, Public Library of Science, 2010, doi:10.1371/journal.pbio.1000429.
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2010 | Research Data Reference | IST-REx-ID: 9764
Rosas, Ulises, et al. Heterosis and the Drift Load. Public Library of Science, 2010, doi:10.1371/journal.pbio.1000429.s003.
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2010 | Journal Article | IST-REx-ID: 12199
Feng, Xiaoqi, and Hugh G. Dickinson. “Tapetal Cell Fate, Lineage and Proliferation in the Arabidopsis Anther.” Development, vol. 137, no. 14, The Company of Biologists, 2010, pp. 2409–16, doi:10.1242/dev.049320.
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2010 | Journal Article | IST-REx-ID: 12200
Feng, Xiaoqi, and Hugh G. Dickinson. “Cell–Cell Interactions during Patterning of the Arabidopsis Anther.” Biochemical Society Transactions, vol. 38, no. 2, Portland Press Ltd., 2010, pp. 571–76, doi:10.1042/bst0380571.
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2010 | Conference Paper | IST-REx-ID: 3852 | OA
Chatterjee, Krishnendu, and Ritankar Majumdar. Discounting in Games across Time Scales. Vol. 25, EPTCS, 2010, pp. 22–29, doi:10.4204/EPTCS.25.6.
[Published Version] View | Files available | DOI | arXiv
 
2010 | Thesis | IST-REx-ID: 3962
Pflicke, Holger.   Dendritic Cell Migration across Basement Membranes in the Skin. Institute of Science and Technology Austria, 2010.
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2010 | Conference Paper | IST-REx-ID: 4361 | OA
Wies, Thomas, et al. Forward Analysis of Depth-Bounded Processes. Edited by Luke Ong, vol. 6014, Springer, 2010, pp. 94–108, doi:10.1007/978-3-642-12032-9_8.
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2010 | Journal Article | IST-REx-ID: 3785
Palero, Ferran, et al. “Genetic Diversity Levels in Fishery-Exploited Spiny Lobsters of the Genus Palinurus (Decapoda: Achelata).” Journal of Crustacean Biology, vol. 30, no. 4, Oxford University Press, 2010, pp. 658–63, doi:10.1651/09-3192.1.
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2010 | Book Chapter | IST-REx-ID: 14983
Schlögl, Alois, et al. “Adaptive Methods in BCI Research - An Introductory Tutorial.” Brain-Computer Interfaces, edited by Bernhard Graimann et al., 1st ed., Springer, 2010, pp. 331–55, doi:10.1007/978-3-642-02091-9_18.
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2009 | Journal Article | IST-REx-ID: 3780 | OA
Davison, Angus, et al. “The Effect of Chirality Phenotype and Genotype on the Fecundity and Viability of Partula Suturalis and Lymnaea Stagnalis: Implications for the Evolution of Sinistral Snails.” Journal of Evolutionary Biology, vol. 22, no. 8, Wiley, 2009, pp. 1624–35, doi:10.1111/j.1420-9101.2009.01770.x.
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2009 | Conference Paper | IST-REx-ID: 3843 | OA
Didier, Frédéric, et al. Fast Adaptive Uniformization of the Chemical Master Equation. Vol. 4, no. 6, IEEE, 2009, pp. 118–27, doi:10.1109/HiBi.2009.23.
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2009 | Conference Paper | IST-REx-ID: 3841 | OA
Henzinger, Thomas A., et al. Formalisms for Specifying Markovian Population Models. Vol. 5797, Springer, 2009, pp. 3–23, doi:10.1007/978-3-642-04420-5_2.
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2009 | Conference Paper | IST-REx-ID: 3844 | OA
Henzinger, Thomas A., et al. Distributed, Modular HTL. IEEE, 2009, pp. 171–80, doi:10.1109/RTSS.2009.9.
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2009 | Conference Paper | IST-REx-ID: 3871 | OA
Chatterjee, Krishnendu, et al. Probabilistic Weighted Automata. Vol. 5710, Springer, 2009, pp. 244–58, doi:10.1007/978-3-642-04081-8_17.
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2009 | Journal Article | IST-REx-ID: 3870 | OA
Chatterjee, Krishnendu, et al. “Finitary Winning in Omega-Regular Games.” ACM Transactions on Computational Logic (TOCL), vol. 11, no. 1, 1, ACM, 2009, doi:10.1145/1614431.1614432.
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2009 | Journal Article | IST-REx-ID: 4136 | OA
Polechova, Jitka, et al. “Species’ Range: Adaptation in Space and Time.” American Naturalist, vol. 174, no. 5, University of Chicago Press, 2009, pp. E186–204, doi:10.1086/605958.
[Published Version] View | Files available | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
2009 | Journal Article | IST-REx-ID: 4242 | OA
Barton, Nicholas H., and Maria De Cara. “The Evolution of Strong Reproductive Isolation.” Evolution; International Journal of Organic Evolution, vol. 63, no. 5, Wiley, 2009, pp. 1171–90, doi:10.1111/j.1558-5646.2009.00622.x.
[Submitted Version] View | Files available | DOI
 
2009 | Book Chapter | IST-REx-ID: 3675
Barton, Nicholas H. “Why Sex and Recombination? .” Cold Spring Harbor Symposia on Quantitative Biology, vol. 74, Cold Spring Harbor Laboratory Press, 2009, pp. 187–95, doi:10.1101/sqb.2009.74.030.
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2009 | Journal Article | IST-REx-ID: 3775 | OA
Barton, Nicholas H., and Jason Coe. “On the Application of Statistical Physics to Evolutionary Biology.” Journal of Theoretical Biology, vol. 259, no. 2, Elsevier, 2009, pp. 317–24, doi:10.1016/j.jtbi.2009.03.019.
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2009 | Conference Paper | IST-REx-ID: 3837 | OA
Tripakis, Stavros, et al. “On Relational Interfaces.” EMSOFT ’09 Proceedings of the Seventh ACM International Conference on Embedded Software, ACM, 2009, pp. 67–76, doi:10.1145/1629335.1629346.
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2009 | Conference Paper | IST-REx-ID: 3968 | OA
Edelsbrunner, Herbert, and John Harer. The Persistent Morse Complex Segmentation of a 3-Manifold. Vol. 5903, Springer, 2009, pp. 36–50, doi:10.1007/978-3-642-10470-1_4.
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2009 | Journal Article | IST-REx-ID: 4231
Barton, Nicholas H., and Harold De Vladar. “Statistical Mechanics and the Evolution of Polygenic Quantitative Traits.” Genetics, vol. 181, no. 3, Genetics Society of America, 2009, pp. 997–1011, doi:10.1534/genetics.108.099309.
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2009 | Conference Paper | IST-REx-ID: 4542 | OA
Chatterjee, Krishnendu, et al. Alternating Weighted Automata. Vol. 5699, Springer, 2009, pp. 3–13, doi:10.1007/978-3-642-03409-1_2.
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2009 | Conference Paper | IST-REx-ID: 4545 | OA
Chatterjee, Krishnendu, et al. A Survey of Stochastic Games with Limsup and Liminf Objectives. Vol. 5556, Springer, 2009, pp. 1–15, doi:10.1007/978-3-642-02930-1_1.
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2009 | Conference Paper | IST-REx-ID: 4543
Chatterjee, Krishnendu, et al. Stochastic Games with Finitary Objectives. Vol. 5734, Springer, 2009, pp. 34–54, doi:10.1007/978-3-642-03816-7_4.
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2009 | Conference Paper | IST-REx-ID: 4569 | OA
Bloem, Roderick, et al. Better Quality in Synthesis through Quantitative Objectives. Vol. 5643, Springer, 2009, pp. 140–56, doi:10.1007/978-3-642-02658-4_14.
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 
2009 | Technical Report | IST-REx-ID: 5393 | OA
Chatterjee, Krishnendu, et al. Gist: A Solver for Probabilistic Games. IST Austria, 2009, doi:10.15479/AT:IST-2009-0003.
[Published Version] View | Files available | DOI
 
2009 | Technical Report | IST-REx-ID: 5394 | OA
Chatterjee, Krishnendu, et al. Improved Lower Bounds for Request-Response and Finitary Streett Games. IST Austria, 2009, doi:10.15479/AT:IST-2009-0002.
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2009 | Technical Report | IST-REx-ID: 5392 | OA
Chatterjee, Krishnendu. Probabilistic Automata on Infinite Words: Decidability and Undecidability Results. IST Austria, 2009, doi:10.15479/AT:IST-2009-0004.
[Published Version] View | Files available | DOI
 
2009 | Technical Report | IST-REx-ID: 5395 | OA
Chatterjee, Krishnendu, et al. Qualitative Analysis of Partially-Observable Markov Decision Processes. IST Austria, 2009, doi:10.15479/AT:IST-2009-0001.
[Published Version] View | Files available | DOI
 
2009 | Journal Article | IST-REx-ID: 9453 | OA
Hsieh, Tzung-Fu, et al. “Genome-Wide Demethylation of Arabidopsis Endosperm.” Science, vol. 324, no. 5933, American Association for the Advancement of Science, 2009, pp. 1451–54, doi:10.1126/science.1172417.
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2008 | Journal Article | IST-REx-ID: 9537
Zilberman, Daniel. “The Evolving Functions of DNA Methylation.” Current Opinion in Plant Biology, vol. 11, no. 5, Elsevier , 2008, pp. 554–59, doi:10.1016/j.pbi.2008.07.004.
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2008 | Journal Article | IST-REx-ID: 9457 | OA
Zilberman, Daniel, et al. “Histone H2A.Z and DNA Methylation Are Mutually Antagonistic Chromatin Marks.” Nature, vol. 456, no. 7218, Springer Nature, 2008, pp. 125–29, doi:10.1038/nature07324.
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2008 | Journal Article | IST-REx-ID: 517
Barton, Nicholas H. “Identity and Coalescence in Structured Populations: A Commentary on ‘Inbreeding Coefficients and Coalescence Times’ by Montgomery Slatkin.” Genetics Research, vol. 89, no. 5–6, Cambridge University Press, 2008, pp. 475–77, doi:10.1017/S0016672308009683.
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2007 | Journal Article | IST-REx-ID: 9487 | OA
Penterman, Jon, et al. “DNA Demethylation in the Arabidopsis Genome.” Proceedings of the National Academy of Sciences, vol. 104, no. 16, National Academy of Sciences, 2007, pp. 6752–57, doi:10.1073/pnas.0701861104.
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2007 | Other Publication | IST-REx-ID: 9504
Zilberman, Daniel. “The Human Promoter Methylome.” Nature Genetics, vol. 39, no. 4, Nature Publishing Group, 2007, pp. 442–43, doi:10.1038/ng0407-442.
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2007 | Journal Article | IST-REx-ID: 9524 | OA
Zilberman, Daniel, and Steven Henikoff. “Genome-Wide Analysis of DNA Methylation Patterns.” Development, vol. 134, no. 22, The Company of Biologists, 2007, pp. 3959–65, doi:10.1242/dev.001131.
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2007 | Journal Article | IST-REx-ID: 12201
Feng, Xiaoqi, and Hugh G. Dickinson. “Packaging the Male Germline in Plants.” Trends in Genetics, vol. 23, no. 10, Elsevier BV, 2007, pp. 503–10, doi:10.1016/j.tig.2007.08.005.
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2006 | Journal Article | IST-REx-ID: 9505
Zilberman, Daniel, et al. “Genome-Wide Analysis of Arabidopsis Thaliana DNA Methylation Uncovers an Interdependence between Methylation and Transcription.” Nature Genetics, vol. 39, no. 1, Nature Publishing Group, 2006, pp. 61–69, doi:10.1038/ng1929.
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2005 | Journal Article | IST-REx-ID: 9491 | OA
Tran, Robert K., et al. “DNA Methylation Profiling Identifies CG Methylation Clusters in Arabidopsis Genes.” Current Biology, vol. 15, no. 2, Elsevier, 2005, pp. 154–59, doi:10.1016/j.cub.2005.01.008.
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2005 | Journal Article | IST-REx-ID: 9514 | OA
Tran, Robert K., et al. “Chromatin and SiRNA Pathways Cooperate to Maintain DNA Methylation of Small Transposable Elements in Arabidopsis.” Genome Biology, vol. 6, no. 11, R90, Springer Nature, 2005, doi:10.1186/gb-2005-6-11-r90.
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2005 | Journal Article | IST-REx-ID: 9529
Zilberman, Daniel, and Steven Henikoff. “Epigenetic Inheritance in Arabidopsis: Selective Silence.” Current Opinion in Genetics and Development, vol. 15, no. 5, Elsevier, 2005, pp. 557–62, doi:10.1016/j.gde.2005.07.002.
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2004 | Journal Article | IST-REx-ID: 9493 | OA
Zilberman, Daniel, et al. “Role of Arabidopsis ARGONAUTE4 in RNA-Directed DNA Methylation Triggered by Inverted Repeats.” Current Biology, vol. 14, no. 13, Elsevier, 2004, pp. 1214–20, doi:10.1016/j.cub.2004.06.055.
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2004 | Journal Article | IST-REx-ID: 9517 | OA
Xie, Zhixin, et al. “Genetic and Functional Diversification of Small RNA Pathways in Plants.” PLoS Biology, vol. 2, no. 5, Public Library of Science, 2004, pp. 0642–52, doi:10.1371/journal.pbio.0020104.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
2004 | Journal Article | IST-REx-ID: 9511 | OA
Zilberman, Daniel, and Steven Henikoff. “Silencing of Transposons in Plant Genomes: Kick Them When They’re Down.” Genome Biology, vol. 5, no. 12, 249, Springer Nature, 2004, doi:10.1186/gb-2004-5-12-249.
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2004 | Journal Article | IST-REx-ID: 9454
Chan, Simon W. L., et al. “RNA Silencing Genes Control de Novo DNA Methylation.” Science, vol. 303, no. 5662, American Association for the Advancement of Science, 2004, p. 1336, doi:10.1126/science.1095989.
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2004 | Journal Article | IST-REx-ID: 12203
Liao, Zhihua, et al. “A New Geranylgeranyl Diphosphate Synthase Gene from Ginkgo Biloba, Which Intermediates the Biosynthesis of the Key Precursor for Ginkgolides.” DNA Sequence, vol. 15, no. 2, Informa UK Limited, 2004, pp. 153–58, doi:10.1080/10425170410001667348.
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2003 | Journal Article | IST-REx-ID: 9495 | OA
Cao, Xiaofeng, et al. “Role of the DRM and CMT3 Methyltransferases in RNA-Directed DNA Methylation.” Current Biology, vol. 13, no. 24, Elsevier, 2003, pp. 2212–17, doi:10.1016/j.cub.2003.11.052.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
2003 | Journal Article | IST-REx-ID: 9455
Zilberman, Daniel, et al. “ARGONAUTE4 Control of Locus-Specific SiRNA Accumulation and DNA and Histone Methylation.” Science, vol. 299, no. 5607, American Association for the Advancement of Science, 2003, pp. 716–19, doi:10.1126/science.1079695.
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2001 | Journal Article | IST-REx-ID: 9444
Lindroth, A. M., et al. “Requirement of CHROMOMETHYLASE3 for Maintenance of CpXpG Methylation.” Science, vol. 292, no. 5524, American Association for the Advancement of Science, 2001, pp. 2077–80, doi:10.1126/science.1059745.
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