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166 Publications
2025 |
Published |
Conference Paper |
IST-REx-ID: 21327 |
Inverse problems with experiment-guided AlphaFold
S.A. Maddipatla, N.E. Sellam, M.I. Bojan, S. Vedula, P. Schanda, A. Marx, A.M. Bronstein, in:, Proceedings of the 42nd International Conference on Machine Learning, ML Research Press, 2025, pp. 42366–42393.
[Published Version]
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| arXiv
S.A. Maddipatla, N.E. Sellam, M.I. Bojan, S. Vedula, P. Schanda, A. Marx, A.M. Bronstein, in:, Proceedings of the 42nd International Conference on Machine Learning, ML Research Press, 2025, pp. 42366–42393.
2025 |
Published |
Journal Article |
IST-REx-ID: 17468 |
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Marcus kinetics control singlet and triplet oxygen evolving from superoxide
S. Mondal, H.T.K. Nguyen, R. Hauschild, S.A. Freunberger, Nature 646 (2025) 601–605.
[Published Version]
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| WoS
| PubMed | Europe PMC
S. Mondal, H.T.K. Nguyen, R. Hauschild, S.A. Freunberger, Nature 646 (2025) 601–605.
2025 |
Published |
Journal Article |
IST-REx-ID: 17884 |
Distinct stabilization of the human T cell leukemia virus type 1 immature Gag lattice
M. Obr, M. Percipalle, D. Chernikova, H. Yang, A. Thader, G. Pinke, D. Porley Esteves, L.M. Mansky, R.A. Dick, F.K. Schur, Nature Structural & Molecular Biology 32 (2025) 268–276.
[Published Version]
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M. Obr, M. Percipalle, D. Chernikova, H. Yang, A. Thader, G. Pinke, D. Porley Esteves, L.M. Mansky, R.A. Dick, F.K. Schur, Nature Structural & Molecular Biology 32 (2025) 268–276.
2025 |
Published |
Thesis | PhD |
IST-REx-ID: 19557
Mapping developmental dynamics of autism spectrum disorder mouse models at single-cell resolution
L.A. Schwarz, Mapping Developmental Dynamics of Autism Spectrum Disorder Mouse Models at Single-Cell Resolution, Institute of Science and Technology Austria, 2025.
[Published Version]
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L.A. Schwarz, Mapping Developmental Dynamics of Autism Spectrum Disorder Mouse Models at Single-Cell Resolution, Institute of Science and Technology Austria, 2025.
2025 |
Published |
Thesis | PhD |
IST-REx-ID: 20694 |
Using genealogies to study the genomic basis of species divergence
A. Pal, Using Genealogies to Study the Genomic Basis of Species Divergence, Institute of Science and Technology Austria, 2025.
[Published Version]
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A. Pal, Using Genealogies to Study the Genomic Basis of Species Divergence, Institute of Science and Technology Austria, 2025.
2025 |
Published |
Journal Article |
IST-REx-ID: 20190 |
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Genealogical analysis of replicate flower colour hybrid zones in Antirrhinum
A. Pal, D. Shipilina, A. Le Moan, A.J. Mcnairn, J.K. Grenier, M. Kucka, G. Coop, Y.F. Chan, N.H. Barton, D. Field, S. Stankowski, Molecular Ecology 34 (2025).
[Published Version]
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A. Pal, D. Shipilina, A. Le Moan, A.J. Mcnairn, J.K. Grenier, M. Kucka, G. Coop, Y.F. Chan, N.H. Barton, D. Field, S. Stankowski, Molecular Ecology 34 (2025).
2025 |
Published |
Thesis | PhD |
IST-REx-ID: 19533 |
Quantum remote sensing and non-equilibrium phase transitions in the microwave regime
R. Sett, Quantum Remote Sensing and Non-Equilibrium Phase Transitions in the Microwave Regime, Institute of Science and Technology Austria, 2025.
[Published Version]
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R. Sett, Quantum Remote Sensing and Non-Equilibrium Phase Transitions in the Microwave Regime, Institute of Science and Technology Austria, 2025.
2025 |
Published |
Thesis | PhD |
IST-REx-ID: 19386 |
Evolution of sex chromosomes, sex determination and asexuality in Artemia brine shrimp
M.N. Elkrewi, Evolution of Sex Chromosomes, Sex Determination and Asexuality in Artemia Brine Shrimp, Institute of Science and Technology Austria, 2025.
[Published Version]
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| DOI
M.N. Elkrewi, Evolution of Sex Chromosomes, Sex Determination and Asexuality in Artemia Brine Shrimp, Institute of Science and Technology Austria, 2025.
2025 |
Published |
Thesis | PhD |
IST-REx-ID: 19431 |
Regulation of Cytoplasmic RNA Polymerase II
A. Hlavata, Regulation of Cytoplasmic RNA Polymerase II, Institute of Science and Technology Austria, 2025.
[Published Version]
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| DOI
A. Hlavata, Regulation of Cytoplasmic RNA Polymerase II, Institute of Science and Technology Austria, 2025.
2024 |
Published |
Journal Article |
IST-REx-ID: 14257 |
Imaging brain tissue architecture across millimeter to nanometer scales
J.M. Michalska, J. Lyudchik, P. Velicky, H. Korinkova, J. Watson, A. Cenameri, C.M. Sommer, N. Amberg, A. Venturino, K. Roessler, T. Czech, R. Höftberger, S. Siegert, G. Novarino, P.M. Jonas, J.G. Danzl, Nature Biotechnology 42 (2024) 1051–1064.
[Published Version]
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J.M. Michalska, J. Lyudchik, P. Velicky, H. Korinkova, J. Watson, A. Cenameri, C.M. Sommer, N. Amberg, A. Venturino, K. Roessler, T. Czech, R. Höftberger, S. Siegert, G. Novarino, P.M. Jonas, J.G. Danzl, Nature Biotechnology 42 (2024) 1051–1064.
2024 |
Published |
Thesis | PhD |
IST-REx-ID: 17850 |
Fitness landscapes of orthologous green fluorescent proteins
L. Gonzalez Somermeyer, Fitness Landscapes of Orthologous Green Fluorescent Proteins, Institute of Science and Technology Austria, 2024.
[Published Version]
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| DOI
L. Gonzalez Somermeyer, Fitness Landscapes of Orthologous Green Fluorescent Proteins, Institute of Science and Technology Austria, 2024.
2024 |
Published |
Conference Paper |
IST-REx-ID: 18121 |
SPADE: Sparsity-guided debugging for deep neural networks
A.S. Moakhar, E.B. Iofinova, E. Frantar, D.-A. Alistarh, in:, Proceedings of the 41st International Conference on Machine Learning, ML Research Press, 2024, pp. 45955–45987.
[Preprint]
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| arXiv
A.S. Moakhar, E.B. Iofinova, E. Frantar, D.-A. Alistarh, in:, Proceedings of the 41st International Conference on Machine Learning, ML Research Press, 2024, pp. 45955–45987.
2024 |
Published |
Thesis | PhD |
IST-REx-ID: 18515 |
Effect of population structure on neutral genetic variation and barriers to gene exchange
P. Surendranadh, Effect of Population Structure on Neutral Genetic Variation and Barriers to Gene Exchange, Institute of Science and Technology Austria, 2024.
[Published Version]
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| DOI
P. Surendranadh, Effect of Population Structure on Neutral Genetic Variation and Barriers to Gene Exchange, Institute of Science and Technology Austria, 2024.
2024 |
Research Data |
IST-REx-ID: 18579 |
A thalamic hub-and-spoke network enables visual perception during action by coordinating visuomotor dynamics
T.A. Vega Zuniga, A.L. Sumser, O. Symonova, P. Koppensteiner, F. Schmidt, M.A. Jösch, (2024).
[Published Version]
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| DOI
T.A. Vega Zuniga, A.L. Sumser, O. Symonova, P. Koppensteiner, F. Schmidt, M.A. Jösch, (2024).
2024 |
Draft |
Preprint |
IST-REx-ID: 18677 |
Light-microscopy based dense connectomic reconstruction of mammalian brain tissue
M. Tavakoli, J. Lyudchik, M. Januszewski, V. Vistunou, N. Agudelo Duenas, J. Vorlaufer, C.M. Sommer, C. Kreuzinger, B. Oliveira, A. Cenameri, G. Novarino, V. Jain, J.G. Danzl, BioRxiv (n.d.).
[Preprint]
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M. Tavakoli, J. Lyudchik, M. Januszewski, V. Vistunou, N. Agudelo Duenas, J. Vorlaufer, C.M. Sommer, C. Kreuzinger, B. Oliveira, A. Cenameri, G. Novarino, V. Jain, J.G. Danzl, BioRxiv (n.d.).
2024 |
Draft |
Preprint |
IST-REx-ID: 18688 |
Human hippocampal CA3 uses specific functional connectivity rules for efficient associative memory
J.F. Watson, V. Vargas-Barroso, R.J. Morse-Mora, A. Navas-Olive, M. Tavakoli, J.G. Danzl, M. Tomschik, K. Rössler, P.M. Jonas, BioRxiv (n.d.).
[Preprint]
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J.F. Watson, V. Vargas-Barroso, R.J. Morse-Mora, A. Navas-Olive, M. Tavakoli, J.G. Danzl, M. Tomschik, K. Rössler, P.M. Jonas, BioRxiv (n.d.).
2024 |
Published |
Journal Article |
IST-REx-ID: 18761 |
Evidence for a novel X chromosome in termites
R. Fraser, R. Moraa, A. Djolai, N. Meisenheimer, S. Laube, B. Vicoso, A.K. Huylmans, Genome Biology and Evolution 16 (2024).
[Published Version]
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R. Fraser, R. Moraa, A. Djolai, N. Meisenheimer, S. Laube, B. Vicoso, A.K. Huylmans, Genome Biology and Evolution 16 (2024).
2024 |
Published |
Thesis | PhD |
IST-REx-ID: 18766 |
Elucidating the structural determinants of the poxvirus core using multi-modal cryo-EM
J. Datler, Elucidating the Structural Determinants of the Poxvirus Core Using Multi-Modal Cryo-EM, Institute of Science and Technology Austria, 2024.
[Published Version]
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J. Datler, Elucidating the Structural Determinants of the Poxvirus Core Using Multi-Modal Cryo-EM, Institute of Science and Technology Austria, 2024.
2024 |
Published |
Conference Paper |
IST-REx-ID: 18891 |
Neural collapse versus low-rank bias: Is deep neural collapse really optimal?
P. Súkeník, C. Lampert, M. Mondelli, in:, 38th Annual Conference on Neural Information Processing Systems, Neural Information Processing Systems Foundation, 2024.
[Published Version]
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| arXiv
P. Súkeník, C. Lampert, M. Mondelli, in:, 38th Annual Conference on Neural Information Processing Systems, Neural Information Processing Systems Foundation, 2024.
2024 |
Published |
Preprint |
IST-REx-ID: 19063 |
Can LLMs separate instructions from data? And what do we even mean by that?
E. Zverev, S. Abdelnabi, S. Tabesh, M. Fritz, C. Lampert, ArXiv (2024).
[Preprint]
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E. Zverev, S. Abdelnabi, S. Tabesh, M. Fritz, C. Lampert, ArXiv (2024).