Carrie Bernecky

18 Publications

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[18]
2025 | Published | Journal Article | IST-REx-ID: 18778 | OA
Tluckova K, Kaczmarek BM, Testa Salmazo AP, Bernecky C. Mechanism of mammalian transcriptional repression by noncoding RNA. Nature Structural & Molecular Biology. 2025;32:607-612. doi:10.1038/s41594-024-01448-7
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[17]
2025 | Published | Journal Article | IST-REx-ID: 20077 | OA | PlanS
Rosani U, Altan N, Venier P, Bortoletto E, Volpi N, Bernecky C. Ancestral origin and functional expression of a hyaluronic acid pathway complement in mussels. Biology. 2025;14(8). doi:10.3390/biology14080930
[Published Version] View | Files available | DOI
 
[16]
2025 | Published | Journal Article | IST-REx-ID: 19465
Bernecky C. Understanding the machinery that reads the genome. Nature Reviews Molecular Cell Biology. 2025;26. doi:10.1038/s41580-025-00844-1
View | DOI | PubMed | Europe PMC
 
[15]
2024 | Published | Journal Article | IST-REx-ID: 18553 | OA
Ramadhin AR, Lee S-H, Zhou D, et al. STK19 drives transcription-coupled repair by stimulating repair complex stability, RNA Pol II ubiquitylation, and TFIIH recruitment. Molecular Cell. 2024;84(24):4740-4757.e12. doi:10.1016/j.molcel.2024.10.030
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[14]
2023 | Draft | Preprint | IST-REx-ID: 14644 | OA
Tluckova K, Testa Salmazo AP, Bernecky C. Mechanism of mammalian transcriptional repression by noncoding RNA. doi:10.15479/AT:ISTA:14644
[Submitted Version] View | Files available | DOI
 
[13]
2022 | Published | Journal Article | IST-REx-ID: 12051 | OA
Daiß JL, Pilsl M, Straub K, et al. The human RNA polymerase I structure reveals an HMG-like docking domain specific to metazoans. Life Science Alliance. 2022;5(11). doi:10.26508/lsa.202201568
[Published Version] View | Files available | DOI | WoS
 
[12]
2022 | Published | Journal Article | IST-REx-ID: 12143 | OA
Zapletal D, Taborska E, Pasulka J, Malik R, Kubicek K, Zanova M, Much C, Sebesta M, Buccheri V, Horvat F, Jenickova I, Prochazkova M, Prochazka J, Pinkas M, Novacek J, Joseph DF, Sedlacek R, Bernecky C, O’Carroll D, Stefl R, Svoboda P. 2022. Structural and functional basis of mammalian microRNA biogenesis by Dicer. Molecular Cell. 82(21), 4064–4079.e13.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[11]
2021 | Published | Journal Article | IST-REx-ID: 10163 | OA
Appel L-M, Franke V, Bruno M, Grishkovskaya I, Kasiliauskaite A, Kaufmann T, Schoeberl UE, Puchinger MG, Kostrhon S, Ebenwaldner C, Sebesta M, Beltzung E, Mechtler K, Lin G, Vlasova A, Leeb M, Pavri R, Stark A, Akalin A, Stefl R, Bernecky C, Djinovic-Carugo K, Slade D. 2021. PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC. Nature Communications. 12(1), 6078.
[Published Version] View | Files available | DOI | WoS
 
[10]
2017 | Published | Journal Article | IST-REx-ID: 600
Engel C, Gubbey T, Neyer S, et al. Structural basis of RNA polymerase I transcription initiation. Cell. 2017;169(1):120-131.e22. doi:10.1016/j.cell.2017.03.003
View | DOI
 
[9]
2017 | Published | Journal Article | IST-REx-ID: 601 | OA
Xu Y, Bernecky C, Lee C, et al. Architecture of the RNA polymerase II-Paf1C-TFIIS transcription elongation complex. Nature Communications. 2017;8. doi:10.1038/ncomms15741
[Published Version] View | Files available | DOI
 
[8]
2017 | Published | Journal Article | IST-REx-ID: 603
Bernecky C, Plitzko J, Cramer P. Structure of a transcribing RNA polymerase II-DSIF complex reveals a multidentate DNA-RNA clamp. Nature Structural and Molecular Biology. 2017;24(10):809-815. doi:10.1038/nsmb.3465
View | DOI
 
[7]
2016 | Published | Journal Article | IST-REx-ID: 602
Bernecky C, Herzog F, Baumeister W, Plitzko J, Cramer P. Structure of transcribing mammalian RNA polymerase II. Nature. 2016;529(7587):551-554. doi:10.1038/nature16482
View | DOI
 
[6]
2015 | Published | Journal Article | IST-REx-ID: 594
Sainsbury S, Bernecky C, Cramer P. Structural basis of transcription initiation by RNA polymerase II. Nature Reviews Molecular Cell Biology. 2015;16(3):129-143. doi:10.1038/nrm3952
View | DOI
 
[5]
2013 | Published | Journal Article | IST-REx-ID: 595 | OA
Bernecky C, Cramer P. Struggling to let go: A non-coding RNA directs its own extension and destruction. EMBO Journal. 2013;32(6):771-772. doi:10.1038/emboj.2013.36
View | DOI | Download None (ext.)
 
[4]
2012 | Published | Journal Article | IST-REx-ID: 596 | OA
Bernecky C, Taatjes D. Activator-mediator binding stabilizes RNA polymerase II orientation within the human mediator-RNA polymerase II-TFIIF assembly. Journal of Molecular Biology. 2012;417(5):387-394. doi:10.1016/j.jmb.2012.02.014
View | DOI | Download None (ext.)
 
[3]
2011 | Published | Journal Article | IST-REx-ID: 597
Bernecky C, Grob P, Ebmeier C, Nogales E, Taatjes D. Molecular architecture of the human Mediator-RNA polymerase II-TFIIF assembly. PLoS Biology. 2011;9(3). doi:10.1371/journal.pbio.1000603
View | DOI
 
[2]
2010 | Published | Journal Article | IST-REx-ID: 598 | OA
Meyer K, Lin S, Bernecky C, Gao Y, Taatjes D. P53 activates transcription by directing structural shifts in Mediator. Nature Structural and Molecular Biology. 2010;17(6):753-760. doi:10.1038/nsmb.1816
View | DOI | Download None (ext.)
 
[1]
2009 | Published | Journal Article | IST-REx-ID: 599 | OA
Knuesel M, Meyer K, Bernecky C, Taatjes D. The human CDK8 subcomplex is a molecular switch that controls Mediator coactivator function. Genes and Development. 2009;23(4):439-451. doi:10.1101/gad.1767009
View | DOI | Download None (ext.)
 
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5 Grants


RNAdeco: decorating RNA for a purpose/ P03- Roles of A-to-I editing in dsRNA recognition (RNAdeco)

2024-03-01 – 2028-02-29
Austrian Science Fund

Structure and function of the NCoR complex and SETD5

2024-09-01 – 2027-08-31
Austrian Science Fund

Hacking the ribosome to map virus-host associations (VirHoX)

2025-02-01 – 2029-01-31
European Innovation Council and Small and Medium-sized Enterprises Executive Agency

RNAdeco: decorating RNA for a purpose (RNAdeco)

2020-03-01 – 2024-02-29
Austrian Science Fund

Regulation of mammalian transcription by noncoding RNA

2020-11-01 – 2023-10-31
Austrian Science Fund

18 Publications

Mark all

[18]
2025 | Published | Journal Article | IST-REx-ID: 18778 | OA
Tluckova K, Kaczmarek BM, Testa Salmazo AP, Bernecky C. Mechanism of mammalian transcriptional repression by noncoding RNA. Nature Structural & Molecular Biology. 2025;32:607-612. doi:10.1038/s41594-024-01448-7
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[17]
2025 | Published | Journal Article | IST-REx-ID: 20077 | OA | PlanS
Rosani U, Altan N, Venier P, Bortoletto E, Volpi N, Bernecky C. Ancestral origin and functional expression of a hyaluronic acid pathway complement in mussels. Biology. 2025;14(8). doi:10.3390/biology14080930
[Published Version] View | Files available | DOI
 
[16]
2025 | Published | Journal Article | IST-REx-ID: 19465
Bernecky C. Understanding the machinery that reads the genome. Nature Reviews Molecular Cell Biology. 2025;26. doi:10.1038/s41580-025-00844-1
View | DOI | PubMed | Europe PMC
 
[15]
2024 | Published | Journal Article | IST-REx-ID: 18553 | OA
Ramadhin AR, Lee S-H, Zhou D, et al. STK19 drives transcription-coupled repair by stimulating repair complex stability, RNA Pol II ubiquitylation, and TFIIH recruitment. Molecular Cell. 2024;84(24):4740-4757.e12. doi:10.1016/j.molcel.2024.10.030
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[14]
2023 | Draft | Preprint | IST-REx-ID: 14644 | OA
Tluckova K, Testa Salmazo AP, Bernecky C. Mechanism of mammalian transcriptional repression by noncoding RNA. doi:10.15479/AT:ISTA:14644
[Submitted Version] View | Files available | DOI
 
[13]
2022 | Published | Journal Article | IST-REx-ID: 12051 | OA
Daiß JL, Pilsl M, Straub K, et al. The human RNA polymerase I structure reveals an HMG-like docking domain specific to metazoans. Life Science Alliance. 2022;5(11). doi:10.26508/lsa.202201568
[Published Version] View | Files available | DOI | WoS
 
[12]
2022 | Published | Journal Article | IST-REx-ID: 12143 | OA
Zapletal D, Taborska E, Pasulka J, Malik R, Kubicek K, Zanova M, Much C, Sebesta M, Buccheri V, Horvat F, Jenickova I, Prochazkova M, Prochazka J, Pinkas M, Novacek J, Joseph DF, Sedlacek R, Bernecky C, O’Carroll D, Stefl R, Svoboda P. 2022. Structural and functional basis of mammalian microRNA biogenesis by Dicer. Molecular Cell. 82(21), 4064–4079.e13.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[11]
2021 | Published | Journal Article | IST-REx-ID: 10163 | OA
Appel L-M, Franke V, Bruno M, Grishkovskaya I, Kasiliauskaite A, Kaufmann T, Schoeberl UE, Puchinger MG, Kostrhon S, Ebenwaldner C, Sebesta M, Beltzung E, Mechtler K, Lin G, Vlasova A, Leeb M, Pavri R, Stark A, Akalin A, Stefl R, Bernecky C, Djinovic-Carugo K, Slade D. 2021. PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC. Nature Communications. 12(1), 6078.
[Published Version] View | Files available | DOI | WoS
 
[10]
2017 | Published | Journal Article | IST-REx-ID: 600
Engel C, Gubbey T, Neyer S, et al. Structural basis of RNA polymerase I transcription initiation. Cell. 2017;169(1):120-131.e22. doi:10.1016/j.cell.2017.03.003
View | DOI
 
[9]
2017 | Published | Journal Article | IST-REx-ID: 601 | OA
Xu Y, Bernecky C, Lee C, et al. Architecture of the RNA polymerase II-Paf1C-TFIIS transcription elongation complex. Nature Communications. 2017;8. doi:10.1038/ncomms15741
[Published Version] View | Files available | DOI
 
[8]
2017 | Published | Journal Article | IST-REx-ID: 603
Bernecky C, Plitzko J, Cramer P. Structure of a transcribing RNA polymerase II-DSIF complex reveals a multidentate DNA-RNA clamp. Nature Structural and Molecular Biology. 2017;24(10):809-815. doi:10.1038/nsmb.3465
View | DOI
 
[7]
2016 | Published | Journal Article | IST-REx-ID: 602
Bernecky C, Herzog F, Baumeister W, Plitzko J, Cramer P. Structure of transcribing mammalian RNA polymerase II. Nature. 2016;529(7587):551-554. doi:10.1038/nature16482
View | DOI
 
[6]
2015 | Published | Journal Article | IST-REx-ID: 594
Sainsbury S, Bernecky C, Cramer P. Structural basis of transcription initiation by RNA polymerase II. Nature Reviews Molecular Cell Biology. 2015;16(3):129-143. doi:10.1038/nrm3952
View | DOI
 
[5]
2013 | Published | Journal Article | IST-REx-ID: 595 | OA
Bernecky C, Cramer P. Struggling to let go: A non-coding RNA directs its own extension and destruction. EMBO Journal. 2013;32(6):771-772. doi:10.1038/emboj.2013.36
View | DOI | Download None (ext.)
 
[4]
2012 | Published | Journal Article | IST-REx-ID: 596 | OA
Bernecky C, Taatjes D. Activator-mediator binding stabilizes RNA polymerase II orientation within the human mediator-RNA polymerase II-TFIIF assembly. Journal of Molecular Biology. 2012;417(5):387-394. doi:10.1016/j.jmb.2012.02.014
View | DOI | Download None (ext.)
 
[3]
2011 | Published | Journal Article | IST-REx-ID: 597
Bernecky C, Grob P, Ebmeier C, Nogales E, Taatjes D. Molecular architecture of the human Mediator-RNA polymerase II-TFIIF assembly. PLoS Biology. 2011;9(3). doi:10.1371/journal.pbio.1000603
View | DOI
 
[2]
2010 | Published | Journal Article | IST-REx-ID: 598 | OA
Meyer K, Lin S, Bernecky C, Gao Y, Taatjes D. P53 activates transcription by directing structural shifts in Mediator. Nature Structural and Molecular Biology. 2010;17(6):753-760. doi:10.1038/nsmb.1816
View | DOI | Download None (ext.)
 
[1]
2009 | Published | Journal Article | IST-REx-ID: 599 | OA
Knuesel M, Meyer K, Bernecky C, Taatjes D. The human CDK8 subcomplex is a molecular switch that controls Mediator coactivator function. Genes and Development. 2009;23(4):439-451. doi:10.1101/gad.1767009
View | DOI | Download None (ext.)
 
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Citation Style: AMA

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