Carrie Bernecky

20 Publications

Mark all

[20]
2026 | Epub ahead of print | Journal Article | IST-REx-ID: 22333 | OA | PlanS
Hlavata, Annamaria, et al. “Structure of Cytoplasmic RNA Polymerase II.” Nature Communications, Springer Nature, 2026, doi:10.1038/s41467-026-75416-8.
[Published Version] View | DOI | Download Published Version (ext.) | bioRxiv
 
[19]
2026 | Published | Journal Article | IST-REx-ID: 22772 | OA | PlanS
Varada R, Leuchtenberger AF, Vesely C, Kaczmarek BM, Mansouri Khosravi H, Mandl TC, Milanovic K, Honarmand Tamizkar K, Rajendra V, Senoner H, Steinbichl L, Borojevic M, Sombke A, Schmidt K, Eckhard M, Hofacker IL, Walkley C, Heraud-Farlow JE, Picardi E, Bernecky C, Jantsch MF. 2026. Distinguishing self from non-self RNA by editing-specific inosine patterns. Nucleic Acids Research. 54(16), gkag845.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[18]
2025 | Published | Journal Article | IST-REx-ID: 18778 | OA
Tluckova, Katarina, et al. “Mechanism of Mammalian Transcriptional Repression by Noncoding RNA.” Nature Structural & Molecular Biology, vol. 32, Springer Nature, 2025, pp. 607–12, doi:10.1038/s41594-024-01448-7.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[17]
2025 | Published | Journal Article | IST-REx-ID: 19465
Bernecky, Carrie. “Understanding the Machinery That Reads the Genome.” Nature Reviews Molecular Cell Biology, vol. 26, 415, Springer Nature, 2025, doi:10.1038/s41580-025-00844-1.
View | DOI | WoS | PubMed | Europe PMC
 
[16]
2025 | Published | Journal Article | IST-REx-ID: 20077 | OA | PlanS
Rosani, Umberto, et al. “Ancestral Origin and Functional Expression of a Hyaluronic Acid Pathway Complement in Mussels.” Biology, vol. 14, no. 8, 930, MDPI, 2025, doi:10.3390/biology14080930.
[Published Version] View | Files available | DOI | WoS
 
[15]
2024 | Published | Journal Article | IST-REx-ID: 18553 | OA
Ramadhin, Anisha R., et al. “STK19 Drives Transcription-Coupled Repair by Stimulating Repair Complex Stability, RNA Pol II Ubiquitylation, and TFIIH Recruitment.” Molecular Cell, vol. 84, no. 24, Elsevier, 2024, p. 4740–4757.e12, doi:10.1016/j.molcel.2024.10.030.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[14]
earlier version | 2023 | Draft | Preprint | IST-REx-ID: 14644 | OA
Tluckova, Katarina, et al. Mechanism of Mammalian Transcriptional Repression by Noncoding RNA. Institute of Science and Technology Austria, doi:10.15479/AT:ISTA:14644.
[Submitted Version] View | Files available | DOI
 
[13]
2022 | Published | Journal Article | IST-REx-ID: 12051 | OA
Daiß, Julia L., et al. “The Human RNA Polymerase I Structure Reveals an HMG-like Docking Domain Specific to Metazoans.” Life Science Alliance, vol. 5, no. 11, e202201568, Life Science Alliance, 2022, doi:10.26508/lsa.202201568.
[Published Version] View | Files available | DOI | WoS
 
[12]
2022 | Published | Journal Article | IST-REx-ID: 12143 | OA
Zapletal D, Taborska E, Pasulka J, Malik R, Kubicek K, Zanova M, Much C, Sebesta M, Buccheri V, Horvat F, Jenickova I, Prochazkova M, Prochazka J, Pinkas M, Novacek J, Joseph DF, Sedlacek R, Bernecky C, O’Carroll D, Stefl R, Svoboda P. 2022. Structural and functional basis of mammalian microRNA biogenesis by Dicer. Molecular Cell. 82(21), 4064–4079.e13.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[11]
2021 | Published | Journal Article | IST-REx-ID: 10163 | OA
Appel L-M, Franke V, Bruno M, Grishkovskaya I, Kasiliauskaite A, Kaufmann T, Schoeberl UE, Puchinger MG, Kostrhon S, Ebenwaldner C, Sebesta M, Beltzung E, Mechtler K, Lin G, Vlasova A, Leeb M, Pavri R, Stark A, Akalin A, Stefl R, Bernecky C, Djinovic-Carugo K, Slade D. 2021. PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC. Nature Communications. 12(1), 6078.
[Published Version] View | Files available | DOI | WoS
 
[10]
2017 | Published | Journal Article | IST-REx-ID: 600
Engel, Christoph, et al. “Structural Basis of RNA Polymerase I Transcription Initiation.” Cell, vol. 169, no. 1, Cell Press, 2017, p. 120–131.e22, doi:10.1016/j.cell.2017.03.003.
View | DOI | WoS
 
[9]
2017 | Published | Journal Article | IST-REx-ID: 601 | OA
Xu, Youwei, et al. “Architecture of the RNA Polymerase II-Paf1C-TFIIS Transcription Elongation Complex.” Nature Communications, vol. 8, 15741, Nature Publishing Group, 2017, doi:10.1038/ncomms15741.
[Published Version] View | Files available | DOI
 
[8]
2017 | Published | Journal Article | IST-REx-ID: 603
Bernecky, Carrie, et al. “Structure of a Transcribing RNA Polymerase II-DSIF Complex Reveals a Multidentate DNA-RNA Clamp.” Nature Structural and Molecular Biology, vol. 24, no. 10, Nature Publishing Group, 2017, pp. 809–15, doi:10.1038/nsmb.3465.
View | DOI | WoS
 
[7]
2016 | Published | Journal Article | IST-REx-ID: 602
Bernecky, Carrie, et al. “Structure of Transcribing Mammalian RNA Polymerase II.” Nature, vol. 529, Springer Nature, 2016, pp. 551–54, doi:10.1038/nature16482.
View | DOI | PubMed | Europe PMC
 
[6]
2015 | Published | Journal Article | IST-REx-ID: 594
Sainsbury, Sarah, et al. “Structural Basis of Transcription Initiation by RNA Polymerase II.” Nature Reviews Molecular Cell Biology, vol. 16, no. 3, Springer Nature, 2015, pp. 129–43, doi:10.1038/nrm3952.
View | DOI | PubMed | Europe PMC
 
[5]
2013 | Published | Journal Article | IST-REx-ID: 595 | OA
Bernecky, Carrie, and Patrick Cramer. “Struggling to Let Go: A Non-Coding RNA Directs Its Own Extension and Destruction.” EMBO Journal, vol. 32, no. 6, Wiley-Blackwell, 2013, pp. 771–72, doi:10.1038/emboj.2013.36.
View | DOI | Download None (ext.)
 
[4]
2012 | Published | Journal Article | IST-REx-ID: 596 | OA
Bernecky, Carrie, and Dylan Taatjes. “Activator-Mediator Binding Stabilizes RNA Polymerase II Orientation within the Human Mediator-RNA Polymerase II-TFIIF Assembly.” Journal of Molecular Biology, vol. 417, no. 5, Elsevier, 2012, pp. 387–94, doi:10.1016/j.jmb.2012.02.014.
View | DOI | Download None (ext.)
 
[3]
2011 | Published | Journal Article | IST-REx-ID: 597
Bernecky, Carrie, et al. “Molecular Architecture of the Human Mediator-RNA Polymerase II-TFIIF Assembly.” PLoS Biology, vol. 9, no. 3, Public Library of Science, 2011, doi:10.1371/journal.pbio.1000603.
View | DOI
 
[2]
2010 | Published | Journal Article | IST-REx-ID: 598 | OA
Meyer, Krista, et al. “P53 Activates Transcription by Directing Structural Shifts in Mediator.” Nature Structural and Molecular Biology, vol. 17, no. 6, Nature Publishing Group, 2010, pp. 753–60, doi:10.1038/nsmb.1816.
View | DOI | Download None (ext.)
 
[1]
2009 | Published | Journal Article | IST-REx-ID: 599 | OA
Knuesel, Matthew, et al. “The Human CDK8 Subcomplex Is a Molecular Switch That Controls Mediator Coactivator Function.” Genes and Development, vol. 23, no. 4, Cold Spring Harbor Laboratory Press, 2009, pp. 439–51, doi:10.1101/gad.1767009.
View | DOI | Download None (ext.)
 
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5 Grants


RNAdeco: decorating RNA for a purpose (RNAdeco)

2020-03-01 – 2024-02-29
Austrian Science Fund

RNAdeco: decorating RNA for a purpose/ P03- Roles of A-to-I editing in dsRNA recognition (RNAdeco)

2020-03-01 – 2028-02-29
Austrian Science Fund

Structure and function of the NCoR complex and SETD5

2024-09-01 – 2027-08-31
Austrian Science Fund

Hacking the ribosome to map virus-host associations (VirHoX)

2025-02-01 – 2029-01-31
European Innovation Council and Small and Medium-sized Enterprises Executive Agency

Regulation of mammalian transcription by noncoding RNA

2020-11-01 – 2023-10-31
Austrian Science Fund

20 Publications

Mark all

[20]
2026 | Epub ahead of print | Journal Article | IST-REx-ID: 22333 | OA | PlanS
Hlavata, Annamaria, et al. “Structure of Cytoplasmic RNA Polymerase II.” Nature Communications, Springer Nature, 2026, doi:10.1038/s41467-026-75416-8.
[Published Version] View | DOI | Download Published Version (ext.) | bioRxiv
 
[19]
2026 | Published | Journal Article | IST-REx-ID: 22772 | OA | PlanS
Varada R, Leuchtenberger AF, Vesely C, Kaczmarek BM, Mansouri Khosravi H, Mandl TC, Milanovic K, Honarmand Tamizkar K, Rajendra V, Senoner H, Steinbichl L, Borojevic M, Sombke A, Schmidt K, Eckhard M, Hofacker IL, Walkley C, Heraud-Farlow JE, Picardi E, Bernecky C, Jantsch MF. 2026. Distinguishing self from non-self RNA by editing-specific inosine patterns. Nucleic Acids Research. 54(16), gkag845.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[18]
2025 | Published | Journal Article | IST-REx-ID: 18778 | OA
Tluckova, Katarina, et al. “Mechanism of Mammalian Transcriptional Repression by Noncoding RNA.” Nature Structural & Molecular Biology, vol. 32, Springer Nature, 2025, pp. 607–12, doi:10.1038/s41594-024-01448-7.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[17]
2025 | Published | Journal Article | IST-REx-ID: 19465
Bernecky, Carrie. “Understanding the Machinery That Reads the Genome.” Nature Reviews Molecular Cell Biology, vol. 26, 415, Springer Nature, 2025, doi:10.1038/s41580-025-00844-1.
View | DOI | WoS | PubMed | Europe PMC
 
[16]
2025 | Published | Journal Article | IST-REx-ID: 20077 | OA | PlanS
Rosani, Umberto, et al. “Ancestral Origin and Functional Expression of a Hyaluronic Acid Pathway Complement in Mussels.” Biology, vol. 14, no. 8, 930, MDPI, 2025, doi:10.3390/biology14080930.
[Published Version] View | Files available | DOI | WoS
 
[15]
2024 | Published | Journal Article | IST-REx-ID: 18553 | OA
Ramadhin, Anisha R., et al. “STK19 Drives Transcription-Coupled Repair by Stimulating Repair Complex Stability, RNA Pol II Ubiquitylation, and TFIIH Recruitment.” Molecular Cell, vol. 84, no. 24, Elsevier, 2024, p. 4740–4757.e12, doi:10.1016/j.molcel.2024.10.030.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[14]
earlier version | 2023 | Draft | Preprint | IST-REx-ID: 14644 | OA
Tluckova, Katarina, et al. Mechanism of Mammalian Transcriptional Repression by Noncoding RNA. Institute of Science and Technology Austria, doi:10.15479/AT:ISTA:14644.
[Submitted Version] View | Files available | DOI
 
[13]
2022 | Published | Journal Article | IST-REx-ID: 12051 | OA
Daiß, Julia L., et al. “The Human RNA Polymerase I Structure Reveals an HMG-like Docking Domain Specific to Metazoans.” Life Science Alliance, vol. 5, no. 11, e202201568, Life Science Alliance, 2022, doi:10.26508/lsa.202201568.
[Published Version] View | Files available | DOI | WoS
 
[12]
2022 | Published | Journal Article | IST-REx-ID: 12143 | OA
Zapletal D, Taborska E, Pasulka J, Malik R, Kubicek K, Zanova M, Much C, Sebesta M, Buccheri V, Horvat F, Jenickova I, Prochazkova M, Prochazka J, Pinkas M, Novacek J, Joseph DF, Sedlacek R, Bernecky C, O’Carroll D, Stefl R, Svoboda P. 2022. Structural and functional basis of mammalian microRNA biogenesis by Dicer. Molecular Cell. 82(21), 4064–4079.e13.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[11]
2021 | Published | Journal Article | IST-REx-ID: 10163 | OA
Appel L-M, Franke V, Bruno M, Grishkovskaya I, Kasiliauskaite A, Kaufmann T, Schoeberl UE, Puchinger MG, Kostrhon S, Ebenwaldner C, Sebesta M, Beltzung E, Mechtler K, Lin G, Vlasova A, Leeb M, Pavri R, Stark A, Akalin A, Stefl R, Bernecky C, Djinovic-Carugo K, Slade D. 2021. PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC. Nature Communications. 12(1), 6078.
[Published Version] View | Files available | DOI | WoS
 
[10]
2017 | Published | Journal Article | IST-REx-ID: 600
Engel, Christoph, et al. “Structural Basis of RNA Polymerase I Transcription Initiation.” Cell, vol. 169, no. 1, Cell Press, 2017, p. 120–131.e22, doi:10.1016/j.cell.2017.03.003.
View | DOI | WoS
 
[9]
2017 | Published | Journal Article | IST-REx-ID: 601 | OA
Xu, Youwei, et al. “Architecture of the RNA Polymerase II-Paf1C-TFIIS Transcription Elongation Complex.” Nature Communications, vol. 8, 15741, Nature Publishing Group, 2017, doi:10.1038/ncomms15741.
[Published Version] View | Files available | DOI
 
[8]
2017 | Published | Journal Article | IST-REx-ID: 603
Bernecky, Carrie, et al. “Structure of a Transcribing RNA Polymerase II-DSIF Complex Reveals a Multidentate DNA-RNA Clamp.” Nature Structural and Molecular Biology, vol. 24, no. 10, Nature Publishing Group, 2017, pp. 809–15, doi:10.1038/nsmb.3465.
View | DOI | WoS
 
[7]
2016 | Published | Journal Article | IST-REx-ID: 602
Bernecky, Carrie, et al. “Structure of Transcribing Mammalian RNA Polymerase II.” Nature, vol. 529, Springer Nature, 2016, pp. 551–54, doi:10.1038/nature16482.
View | DOI | PubMed | Europe PMC
 
[6]
2015 | Published | Journal Article | IST-REx-ID: 594
Sainsbury, Sarah, et al. “Structural Basis of Transcription Initiation by RNA Polymerase II.” Nature Reviews Molecular Cell Biology, vol. 16, no. 3, Springer Nature, 2015, pp. 129–43, doi:10.1038/nrm3952.
View | DOI | PubMed | Europe PMC
 
[5]
2013 | Published | Journal Article | IST-REx-ID: 595 | OA
Bernecky, Carrie, and Patrick Cramer. “Struggling to Let Go: A Non-Coding RNA Directs Its Own Extension and Destruction.” EMBO Journal, vol. 32, no. 6, Wiley-Blackwell, 2013, pp. 771–72, doi:10.1038/emboj.2013.36.
View | DOI | Download None (ext.)
 
[4]
2012 | Published | Journal Article | IST-REx-ID: 596 | OA
Bernecky, Carrie, and Dylan Taatjes. “Activator-Mediator Binding Stabilizes RNA Polymerase II Orientation within the Human Mediator-RNA Polymerase II-TFIIF Assembly.” Journal of Molecular Biology, vol. 417, no. 5, Elsevier, 2012, pp. 387–94, doi:10.1016/j.jmb.2012.02.014.
View | DOI | Download None (ext.)
 
[3]
2011 | Published | Journal Article | IST-REx-ID: 597
Bernecky, Carrie, et al. “Molecular Architecture of the Human Mediator-RNA Polymerase II-TFIIF Assembly.” PLoS Biology, vol. 9, no. 3, Public Library of Science, 2011, doi:10.1371/journal.pbio.1000603.
View | DOI
 
[2]
2010 | Published | Journal Article | IST-REx-ID: 598 | OA
Meyer, Krista, et al. “P53 Activates Transcription by Directing Structural Shifts in Mediator.” Nature Structural and Molecular Biology, vol. 17, no. 6, Nature Publishing Group, 2010, pp. 753–60, doi:10.1038/nsmb.1816.
View | DOI | Download None (ext.)
 
[1]
2009 | Published | Journal Article | IST-REx-ID: 599 | OA
Knuesel, Matthew, et al. “The Human CDK8 Subcomplex Is a Molecular Switch That Controls Mediator Coactivator Function.” Genes and Development, vol. 23, no. 4, Cold Spring Harbor Laboratory Press, 2009, pp. 439–51, doi:10.1101/gad.1767009.
View | DOI | Download None (ext.)
 
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Search

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Display / Sort

Citation Style: MLA

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