Carrie Bernecky

Bernecky Group

15 Publications

Mark all

[15]
2024 | In Press | Journal Article | IST-REx-ID: 18553 | OA
A. R. Ramadhin et al., “STK19 drives transcription-coupled repair by stimulating repair complex stability, RNA Pol II ubiquitylation, and TFIIH recruitment,” Molecular Cell. Elsevier.
[Published Version] View | DOI | Download Published Version (ext.)
 
[14]
2023 | Submitted | Preprint | IST-REx-ID: 14644 | OA
K. Tluckova, A. P. Testa Salmazo, and C. Bernecky, “Mechanism of mammalian transcriptional repression by noncoding RNA.” Institute of Science and Technology Austria.
[Submitted Version] View | Files available | DOI
 
[13]
2022 | Published | Journal Article | IST-REx-ID: 12051 | OA
J. L. Daiß et al., “The human RNA polymerase I structure reveals an HMG-like docking domain specific to metazoans,” Life Science Alliance, vol. 5, no. 11. Life Science Alliance, 2022.
[Published Version] View | Files available | DOI | WoS
 
[12]
2022 | Published | Journal Article | IST-REx-ID: 12143 | OA
Zapletal D, Taborska E, Pasulka J, Malik R, Kubicek K, Zanova M, Much C, Sebesta M, Buccheri V, Horvat F, Jenickova I, Prochazkova M, Prochazka J, Pinkas M, Novacek J, Joseph DF, Sedlacek R, Bernecky C, O’Carroll D, Stefl R, Svoboda P. 2022. Structural and functional basis of mammalian microRNA biogenesis by Dicer. Molecular Cell. 82(21), 4064–4079.e13.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[11]
2021 | Published | Journal Article | IST-REx-ID: 10163 | OA
Appel L-M, Franke V, Bruno M, Grishkovskaya I, Kasiliauskaite A, Kaufmann T, Schoeberl UE, Puchinger MG, Kostrhon S, Ebenwaldner C, Sebesta M, Beltzung E, Mechtler K, Lin G, Vlasova A, Leeb M, Pavri R, Stark A, Akalin A, Stefl R, Bernecky C, Djinovic-Carugo K, Slade D. 2021. PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC. Nature Communications. 12(1), 6078.
[Published Version] View | Files available | DOI | WoS
 
[10]
2017 | Published | Journal Article | IST-REx-ID: 600
C. Engel et al., “Structural basis of RNA polymerase I transcription initiation,” Cell, vol. 169, no. 1. Cell Press, p. 120–131.e22, 2017.
View | DOI
 
[9]
2017 | Published | Journal Article | IST-REx-ID: 601 | OA
Y. Xu et al., “Architecture of the RNA polymerase II-Paf1C-TFIIS transcription elongation complex,” Nature Communications, vol. 8. Nature Publishing Group, 2017.
[Published Version] View | Files available | DOI
 
[8]
2017 | Published | Journal Article | IST-REx-ID: 603
C. Bernecky, J. Plitzko, and P. Cramer, “Structure of a transcribing RNA polymerase II-DSIF complex reveals a multidentate DNA-RNA clamp,” Nature Structural and Molecular Biology, vol. 24, no. 10. Nature Publishing Group, pp. 809–815, 2017.
View | DOI
 
[7]
2016 | Published | Journal Article | IST-REx-ID: 602
C. Bernecky, F. Herzog, W. Baumeister, J. Plitzko, and P. Cramer, “Structure of transcribing mammalian RNA polymerase II,” Nature, vol. 529, no. 7587. Nature Publishing Group, pp. 551–554, 2016.
View | DOI
 
[6]
2015 | Published | Journal Article | IST-REx-ID: 594
S. Sainsbury, C. Bernecky, and P. Cramer, “Structural basis of transcription initiation by RNA polymerase II,” Nature Reviews Molecular Cell Biology, vol. 16, no. 3. Nature Publishing Group, pp. 129–143, 2015.
View | DOI
 
[5]
2013 | Published | Journal Article | IST-REx-ID: 595 | OA
C. Bernecky and P. Cramer, “Struggling to let go: A non-coding RNA directs its own extension and destruction,” EMBO Journal, vol. 32, no. 6. Wiley-Blackwell, pp. 771–772, 2013.
View | DOI | Download None (ext.)
 
[4]
2012 | Published | Journal Article | IST-REx-ID: 596 | OA
C. Bernecky and D. Taatjes, “Activator-mediator binding stabilizes RNA polymerase II orientation within the human mediator-RNA polymerase II-TFIIF assembly,” Journal of Molecular Biology, vol. 417, no. 5. Elsevier, pp. 387–394, 2012.
View | DOI | Download None (ext.)
 
[3]
2011 | Published | Journal Article | IST-REx-ID: 597
C. Bernecky, P. Grob, C. Ebmeier, E. Nogales, and D. Taatjes, “Molecular architecture of the human Mediator-RNA polymerase II-TFIIF assembly,” PLoS Biology, vol. 9, no. 3. Public Library of Science, 2011.
View | DOI
 
[2]
2010 | Published | Journal Article | IST-REx-ID: 598 | OA
K. Meyer, S. Lin, C. Bernecky, Y. Gao, and D. Taatjes, “P53 activates transcription by directing structural shifts in Mediator,” Nature Structural and Molecular Biology, vol. 17, no. 6. Nature Publishing Group, pp. 753–760, 2010.
View | DOI | Download None (ext.)
 
[1]
2009 | Published | Journal Article | IST-REx-ID: 599 | OA
M. Knuesel, K. Meyer, C. Bernecky, and D. Taatjes, “The human CDK8 subcomplex is a molecular switch that controls Mediator coactivator function,” Genes and Development, vol. 23, no. 4. Cold Spring Harbor Laboratory Press, pp. 439–451, 2009.
View | DOI | Download None (ext.)
 
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2 Grants


RNAdeco: decorating RNA for a purpose (RNAdeco)

2020-03-01 – 2024-02-29
FWF

Regulation of mammalian transcription by noncoding RNA

2020-11-01 – 2023-10-31
FWF

15 Publications

Mark all

[15]
2024 | In Press | Journal Article | IST-REx-ID: 18553 | OA
A. R. Ramadhin et al., “STK19 drives transcription-coupled repair by stimulating repair complex stability, RNA Pol II ubiquitylation, and TFIIH recruitment,” Molecular Cell. Elsevier.
[Published Version] View | DOI | Download Published Version (ext.)
 
[14]
2023 | Submitted | Preprint | IST-REx-ID: 14644 | OA
K. Tluckova, A. P. Testa Salmazo, and C. Bernecky, “Mechanism of mammalian transcriptional repression by noncoding RNA.” Institute of Science and Technology Austria.
[Submitted Version] View | Files available | DOI
 
[13]
2022 | Published | Journal Article | IST-REx-ID: 12051 | OA
J. L. Daiß et al., “The human RNA polymerase I structure reveals an HMG-like docking domain specific to metazoans,” Life Science Alliance, vol. 5, no. 11. Life Science Alliance, 2022.
[Published Version] View | Files available | DOI | WoS
 
[12]
2022 | Published | Journal Article | IST-REx-ID: 12143 | OA
Zapletal D, Taborska E, Pasulka J, Malik R, Kubicek K, Zanova M, Much C, Sebesta M, Buccheri V, Horvat F, Jenickova I, Prochazkova M, Prochazka J, Pinkas M, Novacek J, Joseph DF, Sedlacek R, Bernecky C, O’Carroll D, Stefl R, Svoboda P. 2022. Structural and functional basis of mammalian microRNA biogenesis by Dicer. Molecular Cell. 82(21), 4064–4079.e13.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[11]
2021 | Published | Journal Article | IST-REx-ID: 10163 | OA
Appel L-M, Franke V, Bruno M, Grishkovskaya I, Kasiliauskaite A, Kaufmann T, Schoeberl UE, Puchinger MG, Kostrhon S, Ebenwaldner C, Sebesta M, Beltzung E, Mechtler K, Lin G, Vlasova A, Leeb M, Pavri R, Stark A, Akalin A, Stefl R, Bernecky C, Djinovic-Carugo K, Slade D. 2021. PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC. Nature Communications. 12(1), 6078.
[Published Version] View | Files available | DOI | WoS
 
[10]
2017 | Published | Journal Article | IST-REx-ID: 600
C. Engel et al., “Structural basis of RNA polymerase I transcription initiation,” Cell, vol. 169, no. 1. Cell Press, p. 120–131.e22, 2017.
View | DOI
 
[9]
2017 | Published | Journal Article | IST-REx-ID: 601 | OA
Y. Xu et al., “Architecture of the RNA polymerase II-Paf1C-TFIIS transcription elongation complex,” Nature Communications, vol. 8. Nature Publishing Group, 2017.
[Published Version] View | Files available | DOI
 
[8]
2017 | Published | Journal Article | IST-REx-ID: 603
C. Bernecky, J. Plitzko, and P. Cramer, “Structure of a transcribing RNA polymerase II-DSIF complex reveals a multidentate DNA-RNA clamp,” Nature Structural and Molecular Biology, vol. 24, no. 10. Nature Publishing Group, pp. 809–815, 2017.
View | DOI
 
[7]
2016 | Published | Journal Article | IST-REx-ID: 602
C. Bernecky, F. Herzog, W. Baumeister, J. Plitzko, and P. Cramer, “Structure of transcribing mammalian RNA polymerase II,” Nature, vol. 529, no. 7587. Nature Publishing Group, pp. 551–554, 2016.
View | DOI
 
[6]
2015 | Published | Journal Article | IST-REx-ID: 594
S. Sainsbury, C. Bernecky, and P. Cramer, “Structural basis of transcription initiation by RNA polymerase II,” Nature Reviews Molecular Cell Biology, vol. 16, no. 3. Nature Publishing Group, pp. 129–143, 2015.
View | DOI
 
[5]
2013 | Published | Journal Article | IST-REx-ID: 595 | OA
C. Bernecky and P. Cramer, “Struggling to let go: A non-coding RNA directs its own extension and destruction,” EMBO Journal, vol. 32, no. 6. Wiley-Blackwell, pp. 771–772, 2013.
View | DOI | Download None (ext.)
 
[4]
2012 | Published | Journal Article | IST-REx-ID: 596 | OA
C. Bernecky and D. Taatjes, “Activator-mediator binding stabilizes RNA polymerase II orientation within the human mediator-RNA polymerase II-TFIIF assembly,” Journal of Molecular Biology, vol. 417, no. 5. Elsevier, pp. 387–394, 2012.
View | DOI | Download None (ext.)
 
[3]
2011 | Published | Journal Article | IST-REx-ID: 597
C. Bernecky, P. Grob, C. Ebmeier, E. Nogales, and D. Taatjes, “Molecular architecture of the human Mediator-RNA polymerase II-TFIIF assembly,” PLoS Biology, vol. 9, no. 3. Public Library of Science, 2011.
View | DOI
 
[2]
2010 | Published | Journal Article | IST-REx-ID: 598 | OA
K. Meyer, S. Lin, C. Bernecky, Y. Gao, and D. Taatjes, “P53 activates transcription by directing structural shifts in Mediator,” Nature Structural and Molecular Biology, vol. 17, no. 6. Nature Publishing Group, pp. 753–760, 2010.
View | DOI | Download None (ext.)
 
[1]
2009 | Published | Journal Article | IST-REx-ID: 599 | OA
M. Knuesel, K. Meyer, C. Bernecky, and D. Taatjes, “The human CDK8 subcomplex is a molecular switch that controls Mediator coactivator function,” Genes and Development, vol. 23, no. 4. Cold Spring Harbor Laboratory Press, pp. 439–451, 2009.
View | DOI | Download None (ext.)
 
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