Carrie Bernecky

20 Publications

Mark all

[20]
2026 | Epub ahead of print | Journal Article | IST-REx-ID: 22333 | OA | PlanS
Structure of cytoplasmic RNA polymerase II
A. Hlavata, B. Neuditschko, U. Schellhaas, C. Plaschka, F. Herzog, C. Bernecky, Nature Communications (2026).
[Published Version] View | DOI | Download Published Version (ext.) | bioRxiv
 
[19]
2026 | Published | Journal Article | IST-REx-ID: 22772 | OA | PlanS
Distinguishing self from non-self RNA by editing-specific inosine patterns
Varada R, Leuchtenberger AF, Vesely C, Kaczmarek BM, Mansouri Khosravi H, Mandl TC, Milanovic K, Honarmand Tamizkar K, Rajendra V, Senoner H, Steinbichl L, Borojevic M, Sombke A, Schmidt K, Eckhard M, Hofacker IL, Walkley C, Heraud-Farlow JE, Picardi E, Bernecky C, Jantsch MF. 2026. Distinguishing self from non-self RNA by editing-specific inosine patterns. Nucleic Acids Research. 54(16), gkag845.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[18]
2025 | Published | Journal Article | IST-REx-ID: 18778 | OA
Mechanism of mammalian transcriptional repression by noncoding RNA
K. Tluckova, B.M. Kaczmarek, A.P. Testa Salmazo, C. Bernecky, Nature Structural & Molecular Biology 32 (2025) 607–612.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[17]
2025 | Published | Journal Article | IST-REx-ID: 19465
Understanding the machinery that reads the genome
C. Bernecky, Nature Reviews Molecular Cell Biology 26 (2025).
View | DOI | WoS | PubMed | Europe PMC
 
[16]
2025 | Published | Journal Article | IST-REx-ID: 20077 | OA | PlanS
Ancestral origin and functional expression of a hyaluronic acid pathway complement in mussels
U. Rosani, N. Altan, P. Venier, E. Bortoletto, N. Volpi, C. Bernecky, Biology 14 (2025).
[Published Version] View | Files available | DOI | WoS
 
[15]
2024 | Published | Journal Article | IST-REx-ID: 18553 | OA
STK19 drives transcription-coupled repair by stimulating repair complex stability, RNA Pol II ubiquitylation, and TFIIH recruitment
A.R. Ramadhin, S.-H. Lee, D. Zhou, A.P. Testa Salmazo, C. Gonzalo-Hansen, M. van Sluis, C.M.A. Blom, R.C. Janssens, A. Raams, D. Dekkers, K. Bezstarosti, D. Slade, W. Vermeulen, A. Pines, J.A.A. Demmers, C. Bernecky, T.K. Sixma, J.A. Marteijn, Molecular Cell 84 (2024) 4740–4757.e12.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[14]
earlier version | 2023 | Draft | Preprint | IST-REx-ID: 14644 | OA
Mechanism of mammalian transcriptional repression by noncoding RNA
K. Tluckova, A.P. Testa Salmazo, C. Bernecky, (n.d.).
[Submitted Version] View | Files available | DOI
 
[13]
2022 | Published | Journal Article | IST-REx-ID: 12051 | OA
The human RNA polymerase I structure reveals an HMG-like docking domain specific to metazoans
J.L. Daiß, M. Pilsl, K. Straub, A. Bleckmann, M. Höcherl, F.B. Heiss, G. Abascal-Palacios, E.P. Ramsay, K. Tluckova, J.-C. Mars, T. Fürtges, A. Bruckmann, T. Rudack, C. Bernecky, V. Lamour, K. Panov, A. Vannini, T. Moss, C. Engel, Life Science Alliance 5 (2022).
[Published Version] View | Files available | DOI | WoS
 
[12]
2022 | Published | Journal Article | IST-REx-ID: 12143 | OA
Structural and functional basis of mammalian microRNA biogenesis by Dicer
Zapletal D, Taborska E, Pasulka J, Malik R, Kubicek K, Zanova M, Much C, Sebesta M, Buccheri V, Horvat F, Jenickova I, Prochazkova M, Prochazka J, Pinkas M, Novacek J, Joseph DF, Sedlacek R, Bernecky C, O’Carroll D, Stefl R, Svoboda P. 2022. Structural and functional basis of mammalian microRNA biogenesis by Dicer. Molecular Cell. 82(21), 4064–4079.e13.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[11]
2021 | Published | Journal Article | IST-REx-ID: 10163 | OA
PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC
Appel L-M, Franke V, Bruno M, Grishkovskaya I, Kasiliauskaite A, Kaufmann T, Schoeberl UE, Puchinger MG, Kostrhon S, Ebenwaldner C, Sebesta M, Beltzung E, Mechtler K, Lin G, Vlasova A, Leeb M, Pavri R, Stark A, Akalin A, Stefl R, Bernecky C, Djinovic-Carugo K, Slade D. 2021. PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC. Nature Communications. 12(1), 6078.
[Published Version] View | Files available | DOI | WoS
 
[10]
2017 | Published | Journal Article | IST-REx-ID: 600
Structural basis of RNA polymerase I transcription initiation
C. Engel, T. Gubbey, S. Neyer, S. Sainsbury, C. Oberthuer, C. Baejen, C. Bernecky, P. Cramer, Cell 169 (2017) 120–131.e22.
View | DOI | WoS
 
[9]
2017 | Published | Journal Article | IST-REx-ID: 601 | OA
Architecture of the RNA polymerase II-Paf1C-TFIIS transcription elongation complex
Y. Xu, C. Bernecky, C. Lee, K. Maier, B. Schwalb, D. Tegunov, J. Plitzko, H. Urlaub, P. Cramer, Nature Communications 8 (2017).
[Published Version] View | Files available | DOI
 
[8]
2017 | Published | Journal Article | IST-REx-ID: 603
Structure of a transcribing RNA polymerase II-DSIF complex reveals a multidentate DNA-RNA clamp
C. Bernecky, J. Plitzko, P. Cramer, Nature Structural and Molecular Biology 24 (2017) 809–815.
View | DOI | WoS
 
[7]
2016 | Published | Journal Article | IST-REx-ID: 602
Structure of transcribing mammalian RNA polymerase II
C. Bernecky, F. Herzog, W. Baumeister, J. Plitzko, P. Cramer, Nature 529 (2016) 551–554.
View | DOI | PubMed | Europe PMC
 
[6]
2015 | Published | Journal Article | IST-REx-ID: 594
Structural basis of transcription initiation by RNA polymerase II
S. Sainsbury, C. Bernecky, P. Cramer, Nature Reviews Molecular Cell Biology 16 (2015) 129–143.
View | DOI | PubMed | Europe PMC
 
[5]
2013 | Published | Journal Article | IST-REx-ID: 595 | OA
Struggling to let go: A non-coding RNA directs its own extension and destruction
C. Bernecky, P. Cramer, EMBO Journal 32 (2013) 771–772.
View | DOI | Download None (ext.)
 
[4]
2012 | Published | Journal Article | IST-REx-ID: 596 | OA
Activator-mediator binding stabilizes RNA polymerase II orientation within the human mediator-RNA polymerase II-TFIIF assembly
C. Bernecky, D. Taatjes, Journal of Molecular Biology 417 (2012) 387–394.
View | DOI | Download None (ext.)
 
[3]
2011 | Published | Journal Article | IST-REx-ID: 597
Molecular architecture of the human Mediator-RNA polymerase II-TFIIF assembly
C. Bernecky, P. Grob, C. Ebmeier, E. Nogales, D. Taatjes, PLoS Biology 9 (2011).
View | DOI
 
[2]
2010 | Published | Journal Article | IST-REx-ID: 598 | OA
P53 activates transcription by directing structural shifts in Mediator
K. Meyer, S. Lin, C. Bernecky, Y. Gao, D. Taatjes, Nature Structural and Molecular Biology 17 (2010) 753–760.
View | DOI | Download None (ext.)
 
[1]
2009 | Published | Journal Article | IST-REx-ID: 599 | OA
The human CDK8 subcomplex is a molecular switch that controls Mediator coactivator function
M. Knuesel, K. Meyer, C. Bernecky, D. Taatjes, Genes and Development 23 (2009) 439–451.
View | DOI | Download None (ext.)
 
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5 Grants


RNAdeco: decorating RNA for a purpose (RNAdeco)

2020-03-01 – 2024-02-29
Austrian Science Fund

RNAdeco: decorating RNA for a purpose/ P03- Roles of A-to-I editing in dsRNA recognition (RNAdeco)

2020-03-01 – 2028-02-29
Austrian Science Fund

Structure and function of the NCoR complex and SETD5

2024-09-01 – 2027-08-31
Austrian Science Fund

Hacking the ribosome to map virus-host associations (VirHoX)

2025-02-01 – 2029-01-31
European Innovation Council and Small and Medium-sized Enterprises Executive Agency

Regulation of mammalian transcription by noncoding RNA

2020-11-01 – 2023-10-31
Austrian Science Fund

20 Publications

Mark all

[20]
2026 | Epub ahead of print | Journal Article | IST-REx-ID: 22333 | OA | PlanS
Structure of cytoplasmic RNA polymerase II
A. Hlavata, B. Neuditschko, U. Schellhaas, C. Plaschka, F. Herzog, C. Bernecky, Nature Communications (2026).
[Published Version] View | DOI | Download Published Version (ext.) | bioRxiv
 
[19]
2026 | Published | Journal Article | IST-REx-ID: 22772 | OA | PlanS
Distinguishing self from non-self RNA by editing-specific inosine patterns
Varada R, Leuchtenberger AF, Vesely C, Kaczmarek BM, Mansouri Khosravi H, Mandl TC, Milanovic K, Honarmand Tamizkar K, Rajendra V, Senoner H, Steinbichl L, Borojevic M, Sombke A, Schmidt K, Eckhard M, Hofacker IL, Walkley C, Heraud-Farlow JE, Picardi E, Bernecky C, Jantsch MF. 2026. Distinguishing self from non-self RNA by editing-specific inosine patterns. Nucleic Acids Research. 54(16), gkag845.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[18]
2025 | Published | Journal Article | IST-REx-ID: 18778 | OA
Mechanism of mammalian transcriptional repression by noncoding RNA
K. Tluckova, B.M. Kaczmarek, A.P. Testa Salmazo, C. Bernecky, Nature Structural & Molecular Biology 32 (2025) 607–612.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[17]
2025 | Published | Journal Article | IST-REx-ID: 19465
Understanding the machinery that reads the genome
C. Bernecky, Nature Reviews Molecular Cell Biology 26 (2025).
View | DOI | WoS | PubMed | Europe PMC
 
[16]
2025 | Published | Journal Article | IST-REx-ID: 20077 | OA | PlanS
Ancestral origin and functional expression of a hyaluronic acid pathway complement in mussels
U. Rosani, N. Altan, P. Venier, E. Bortoletto, N. Volpi, C. Bernecky, Biology 14 (2025).
[Published Version] View | Files available | DOI | WoS
 
[15]
2024 | Published | Journal Article | IST-REx-ID: 18553 | OA
STK19 drives transcription-coupled repair by stimulating repair complex stability, RNA Pol II ubiquitylation, and TFIIH recruitment
A.R. Ramadhin, S.-H. Lee, D. Zhou, A.P. Testa Salmazo, C. Gonzalo-Hansen, M. van Sluis, C.M.A. Blom, R.C. Janssens, A. Raams, D. Dekkers, K. Bezstarosti, D. Slade, W. Vermeulen, A. Pines, J.A.A. Demmers, C. Bernecky, T.K. Sixma, J.A. Marteijn, Molecular Cell 84 (2024) 4740–4757.e12.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[14]
earlier version | 2023 | Draft | Preprint | IST-REx-ID: 14644 | OA
Mechanism of mammalian transcriptional repression by noncoding RNA
K. Tluckova, A.P. Testa Salmazo, C. Bernecky, (n.d.).
[Submitted Version] View | Files available | DOI
 
[13]
2022 | Published | Journal Article | IST-REx-ID: 12051 | OA
The human RNA polymerase I structure reveals an HMG-like docking domain specific to metazoans
J.L. Daiß, M. Pilsl, K. Straub, A. Bleckmann, M. Höcherl, F.B. Heiss, G. Abascal-Palacios, E.P. Ramsay, K. Tluckova, J.-C. Mars, T. Fürtges, A. Bruckmann, T. Rudack, C. Bernecky, V. Lamour, K. Panov, A. Vannini, T. Moss, C. Engel, Life Science Alliance 5 (2022).
[Published Version] View | Files available | DOI | WoS
 
[12]
2022 | Published | Journal Article | IST-REx-ID: 12143 | OA
Structural and functional basis of mammalian microRNA biogenesis by Dicer
Zapletal D, Taborska E, Pasulka J, Malik R, Kubicek K, Zanova M, Much C, Sebesta M, Buccheri V, Horvat F, Jenickova I, Prochazkova M, Prochazka J, Pinkas M, Novacek J, Joseph DF, Sedlacek R, Bernecky C, O’Carroll D, Stefl R, Svoboda P. 2022. Structural and functional basis of mammalian microRNA biogenesis by Dicer. Molecular Cell. 82(21), 4064–4079.e13.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[11]
2021 | Published | Journal Article | IST-REx-ID: 10163 | OA
PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC
Appel L-M, Franke V, Bruno M, Grishkovskaya I, Kasiliauskaite A, Kaufmann T, Schoeberl UE, Puchinger MG, Kostrhon S, Ebenwaldner C, Sebesta M, Beltzung E, Mechtler K, Lin G, Vlasova A, Leeb M, Pavri R, Stark A, Akalin A, Stefl R, Bernecky C, Djinovic-Carugo K, Slade D. 2021. PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC. Nature Communications. 12(1), 6078.
[Published Version] View | Files available | DOI | WoS
 
[10]
2017 | Published | Journal Article | IST-REx-ID: 600
Structural basis of RNA polymerase I transcription initiation
C. Engel, T. Gubbey, S. Neyer, S. Sainsbury, C. Oberthuer, C. Baejen, C. Bernecky, P. Cramer, Cell 169 (2017) 120–131.e22.
View | DOI | WoS
 
[9]
2017 | Published | Journal Article | IST-REx-ID: 601 | OA
Architecture of the RNA polymerase II-Paf1C-TFIIS transcription elongation complex
Y. Xu, C. Bernecky, C. Lee, K. Maier, B. Schwalb, D. Tegunov, J. Plitzko, H. Urlaub, P. Cramer, Nature Communications 8 (2017).
[Published Version] View | Files available | DOI
 
[8]
2017 | Published | Journal Article | IST-REx-ID: 603
Structure of a transcribing RNA polymerase II-DSIF complex reveals a multidentate DNA-RNA clamp
C. Bernecky, J. Plitzko, P. Cramer, Nature Structural and Molecular Biology 24 (2017) 809–815.
View | DOI | WoS
 
[7]
2016 | Published | Journal Article | IST-REx-ID: 602
Structure of transcribing mammalian RNA polymerase II
C. Bernecky, F. Herzog, W. Baumeister, J. Plitzko, P. Cramer, Nature 529 (2016) 551–554.
View | DOI | PubMed | Europe PMC
 
[6]
2015 | Published | Journal Article | IST-REx-ID: 594
Structural basis of transcription initiation by RNA polymerase II
S. Sainsbury, C. Bernecky, P. Cramer, Nature Reviews Molecular Cell Biology 16 (2015) 129–143.
View | DOI | PubMed | Europe PMC
 
[5]
2013 | Published | Journal Article | IST-REx-ID: 595 | OA
Struggling to let go: A non-coding RNA directs its own extension and destruction
C. Bernecky, P. Cramer, EMBO Journal 32 (2013) 771–772.
View | DOI | Download None (ext.)
 
[4]
2012 | Published | Journal Article | IST-REx-ID: 596 | OA
Activator-mediator binding stabilizes RNA polymerase II orientation within the human mediator-RNA polymerase II-TFIIF assembly
C. Bernecky, D. Taatjes, Journal of Molecular Biology 417 (2012) 387–394.
View | DOI | Download None (ext.)
 
[3]
2011 | Published | Journal Article | IST-REx-ID: 597
Molecular architecture of the human Mediator-RNA polymerase II-TFIIF assembly
C. Bernecky, P. Grob, C. Ebmeier, E. Nogales, D. Taatjes, PLoS Biology 9 (2011).
View | DOI
 
[2]
2010 | Published | Journal Article | IST-REx-ID: 598 | OA
P53 activates transcription by directing structural shifts in Mediator
K. Meyer, S. Lin, C. Bernecky, Y. Gao, D. Taatjes, Nature Structural and Molecular Biology 17 (2010) 753–760.
View | DOI | Download None (ext.)
 
[1]
2009 | Published | Journal Article | IST-REx-ID: 599 | OA
The human CDK8 subcomplex is a molecular switch that controls Mediator coactivator function
M. Knuesel, K. Meyer, C. Bernecky, D. Taatjes, Genes and Development 23 (2009) 439–451.
View | DOI | Download None (ext.)
 
Marked Publication(s)

Search

Filter Publications

Display / Sort

Citation Style: Default

Export / Embed