Research data for the publication "Imaging brain tissue architecture across millimeter to nanometer scales"

Danzl JG. 2023. Research data for the publication ‘Imaging brain tissue architecture across millimeter to nanometer scales’, Institute of Science and Technology Austria, 10.15479/AT:ISTA:13126.

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OA Readme_Michalska_2023.txt 541 bytes [Published Version] OA Fig1_b_top-left.tif 64.58 MB OA Fig1_b_top-right.tif 1.44 MB
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DOI
10.15479/AT:ISTA:13126
Research Data
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Creator
Danzl, Johann GISTA

Corresponding author has ISTA affiliation

Contributor
; ; ; ; ; ; ; ; ; ; ; ; ; ;
Department
Danzl Group
Siegert Group
Novarino Group
Jonas Group
Imaging & Optics Facility
Shigemoto Group
Grant
Optical control of synaptic function via adhesion molecules
Molecular Drug Targets
Wittgenstein Award - Peter Jonas
High content imaging to decode human immune cell interactions in health and allergic disease
Probing the Reversibility of Autism Spectrum Disorders by Employing in vivo and in vitro Models
Biophysics and circuit function of a giant cortical glutamatergic synapse
International IST Doctoral Program
Synaptic computations of the hippocampal CA3 circuitry
Abstract
Mapping the complex and dense arrangement of cells and their connectivity in brain tissue demands nanoscale spatial resolution imaging. Super-resolution optical microscopy excels at visualizing specific molecules and individual cells but fails to provide tissue context. Here, we developed Comprehensive Analysis of Tissues across Scales (CATS), a technology to densely map brain tissue architecture from millimeter regional to nanometer synaptic scales in diverse chemically fixed brain preparations, including rodent and human. CATS uses fixation-compatible extracellular labeling and optical imaging, including stimulated emission depletion or expansion microscopy, to comprehensively delineate cellular structures. It enables three-dimensional reconstruction of single synapses and mapping of synaptic connectivity by identification and analysis of putative synaptic cleft regions. Applying CATS to the mouse hippocampal mossy fiber circuitry, we reconstructed and quantified the synaptic input and output structure of identified neurons. We furthermore demonstrate applicability to clinically derived human tissue samples, including formalin-fixed paraffin-embedded routine diagnostic specimens, for visualizing the cellular architecture of brain tissue in health and disease.
Publishing Year
2023
Date Published
2023-08-04
Publisher
Institute of Science and Technology Austria
Acknowledgement
We thank Jakob Vorlaufer, Nathalie Agudelo-Dueñas, Wiebke Jahr, Andreas Wartak for microscope maintenance and troubleshooting, Caroline Kreuzinger, Anna Freeman, and Irene Erber for technical assistance and Matthias Tomschik for support with obtaining human samples. We gratefully acknowledge Eder Miguel for setting up webKnossos and Marek Šuplata for computational support and hardware control. We are grateful to Ryuichi Shigemoto and Bernd Bickel for generous support, and Michael Sixt and Scott Boyd (Stanford University) for discussions and critical reading of the manuscript. PSD95-HaloTag mice were kindly provided by Seth Grant (University of Edinburgh). We acknowledge expert support by IST Austria’s scientific computing, imaging and optics, preclinical, and lab support facilities, and by the Library and Miba machine shop. We gratefully acknowledge funding by the following sources: Austrian Science Fund (FWF) grant I3600-B27 (JGD) Austrian Science Fund (FWF) grant DK W1232 (JGD, JMM) Austrian Science Fund (FWF) grant Z 312-B27, Wittgenstein award (PJ) Austrian Science Funds (FWF) projects I4685-B, I6565-B (SYNABS) and DOC 33-B27 (RH) Gesellschaft für Forschungsförderung NÖ (NFB) grant LSC18-022 (JGD) European Union’s Horizon 2020 research and innovation programme, European Research Council (ERC) grant 715508 – REVERSEAUTISM (GN) European Union’s Horizon 2020 research and innovation programme, European Research Council (ERC) grant 692692 – GIANTSYN (PJ) Marie Skłodowska-Curie Actions Fellowship GA no. 665385 under the EU Horizon 2020 program (JMM, JL) Marie Skłodowska-Curie Actions Individual Fellowship 101026635 under the EU Horizon 2020 program (JFW)
Acknowledged SSUs
Scientific Computing
Imaging & Optics Facility
Pre-Clinical Facility
Lab Support Facility
Machine Shop
Library
IST-REx-ID
13126

Cite this

Danzl JG. Research data for the publication “Imaging brain tissue architecture across millimeter to nanometer scales.” 2023. doi:10.15479/AT:ISTA:13126
Danzl, J. G. (2023). Research data for the publication “Imaging brain tissue architecture across millimeter to nanometer scales.” Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:13126
Danzl, Johann G. “Research Data for the Publication ‘Imaging Brain Tissue Architecture across Millimeter to Nanometer Scales.’” Institute of Science and Technology Austria, 2023. https://doi.org/10.15479/AT:ISTA:13126.
J. G. Danzl, “Research data for the publication ‘Imaging brain tissue architecture across millimeter to nanometer scales.’” Institute of Science and Technology Austria, 2023.
Danzl JG. 2023. Research data for the publication ‘Imaging brain tissue architecture across millimeter to nanometer scales’, Institute of Science and Technology Austria, 10.15479/AT:ISTA:13126.
Danzl, Johann G. Research Data for the Publication “Imaging Brain Tissue Architecture across Millimeter to Nanometer Scales.” Institute of Science and Technology Austria, 2023, doi:10.15479/AT:ISTA:13126.
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