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79 Publications
2024 |Published| Journal Article | IST-REx-ID: 15009 |
Chromosome-level assembly of Artemia franciscana sheds light on sex chromosome differentiation
V.K. Bett, A. Macon, B. Vicoso, M.N. Elkrewi, Genome Biology and Evolution 16 (2024).
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V.K. Bett, A. Macon, B. Vicoso, M.N. Elkrewi, Genome Biology and Evolution 16 (2024).
2024 | Research Data | IST-REx-ID: 14705 |
Data from "Chromosome-level assembly of Artemia franciscana sheds light on sex-chromosome differentiation"
M.N. Elkrewi, (2024).
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M.N. Elkrewi, (2024).
2024 |Published| Thesis | IST-REx-ID: 17119
Characterizing the sequence and expression evolution of the t-haplotype, a model meiotic driver
R.K. Kelemen, Characterizing the Sequence and Expression Evolution of the T-Haplotype, a Model Meiotic Driver, Institute of Science and Technology Austria, 2024.
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R.K. Kelemen, Characterizing the Sequence and Expression Evolution of the T-Haplotype, a Model Meiotic Driver, Institute of Science and Technology Austria, 2024.
2024 |Published| Thesis | IST-REx-ID: 17206
Novel approaches to studying alternative splicing in Drosophila Melanogaster: Insights into sex-specific gene expression and the evolution of sex determination
J. Raices, Novel Approaches to Studying Alternative Splicing in Drosophila Melanogaster: Insights into Sex-Specific Gene Expression and the Evolution of Sex Determination, Institute of Science and Technology Austria, 2024.
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J. Raices, Novel Approaches to Studying Alternative Splicing in Drosophila Melanogaster: Insights into Sex-Specific Gene Expression and the Evolution of Sex Determination, Institute of Science and Technology Austria, 2024.
2024 |Published| Journal Article | IST-REx-ID: 17458 |
Compensation of gene dosage on the mammalian X
D. Cecalev, B. Vicoso, R. Galupa, Development 151 (2024).
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D. Cecalev, B. Vicoso, R. Galupa, Development 151 (2024).
2024 | Research Data | IST-REx-ID: 17362 |
Data for: "Single-nucleus atlas of the Artemia female reproductive system suggests germline repression of the Z chromosome"
M.N. Elkrewi, B. Vicoso, (2024).
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M.N. Elkrewi, B. Vicoso, (2024).
2024 |Epub ahead of print| Journal Article | IST-REx-ID: 17890 |
Single-nucleus atlas of the Artemia female reproductive system suggests germline repression of the Z chromosome
M.N. Elkrewi, B. Vicoso, PLoS Genetics (2024).
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M.N. Elkrewi, B. Vicoso, PLoS Genetics (2024).
2023 |Published| Journal Article | IST-REx-ID: 11479 |
Ten years of demographic modelling of divergence and speciation in the sea
A. De Jode, A. Le Moan, K. Johannesson, R. Faria, S. Stankowski, A.M. Westram, R.K. Butlin, M. Rafajlović, C. Fraisse, Evolutionary Applications 16 (2023) 542–559.
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A. De Jode, A. Le Moan, K. Johannesson, R. Faria, S. Stankowski, A.M. Westram, R.K. Butlin, M. Rafajlović, C. Fraisse, Evolutionary Applications 16 (2023) 542–559.
2023 |Published| Journal Article | IST-REx-ID: 13260 |
Selection on the fly: Short-term adaptation to an altered sexual selection regime in Drosophila pseudoobscura
C. de Castro Barbosa Rodrigues Barata, R.R. Snook, M.G. Ritchie, C. Kosiol, Genome Biology and Evolution 15 (2023).
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C. de Castro Barbosa Rodrigues Barata, R.R. Snook, M.G. Ritchie, C. Kosiol, Genome Biology and Evolution 15 (2023).
2023 |Published| Journal Article | IST-REx-ID: 12521 |
Slower-X: Reduced efficiency of selection in the early stages of X chromosome evolution
A. Mrnjavac, K. Khudiakova, N.H. Barton, B. Vicoso, Evolution Letters 7 (2023).
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A. Mrnjavac, K. Khudiakova, N.H. Barton, B. Vicoso, Evolution Letters 7 (2023).
2023 |Published| Journal Article | IST-REx-ID: 14604 |
The X chromosome of insects likely predates the origin of class Insecta
M.A. Toups, B. Vicoso, Evolution 77 (2023) 2504–2511.
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M.A. Toups, B. Vicoso, Evolution 77 (2023) 2504–2511.
2023 | Research Data Reference | IST-REx-ID: 14616 |
The X chromosome of insects likely predates the origin of Class Insecta
M.A. Toups, B. Vicoso, (2023).
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M.A. Toups, B. Vicoso, (2023).
2023 | Research Data Reference | IST-REx-ID: 14617 |
The X chromosome of insects likely predates the origin of Class Insecta
M.A. Toups, B. Vicoso, (2023).
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M.A. Toups, B. Vicoso, (2023).
2023 |Published| Thesis | IST-REx-ID: 14058 |
The molecular basis of sexual dimorphism: Experimental and theoretical characterization of phenotypic, transcriptomic and genetic patterns of sex-specific adaptation
G. Puixeu Sala, The Molecular Basis of Sexual Dimorphism: Experimental and Theoretical Characterization of Phenotypic, Transcriptomic and Genetic Patterns of Sex-Specific Adaptation, Institute of Science and Technology Austria, 2023.
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G. Puixeu Sala, The Molecular Basis of Sexual Dimorphism: Experimental and Theoretical Characterization of Phenotypic, Transcriptomic and Genetic Patterns of Sex-Specific Adaptation, Institute of Science and Technology Austria, 2023.
2023 |Published| Journal Article | IST-REx-ID: 14077 |
Sex-specific estimation of cis and trans regulation of gene expression in heads and gonads of Drosophila melanogaster
G. Puixeu Sala, A. Macon, B. Vicoso, G3: Genes, Genomes, Genetics 13 (2023).
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G. Puixeu Sala, A. Macon, B. Vicoso, G3: Genes, Genomes, Genetics 13 (2023).
2023 | Research Data | IST-REx-ID: 12933 |
Data from: Sex-specific estimation of cis and trans regulation of gene expression in heads and gonads of Drosophila melanogaster
G. Puixeu Sala, (2023).
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G. Puixeu Sala, (2023).
2023 |Published| Journal Article | IST-REx-ID: 14742 |
The impact of chromosomal rearrangements in speciation: From micro- to macroevolution
K. Lucek, M.D. Giménez, M. Joron, M. Rafajlović, J.B. Searle, N. Walden, A.M. Westram, R. Faria, Cold Spring Harbor Perspectives in Biology 15 (2023).
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K. Lucek, M.D. Giménez, M. Joron, M. Rafajlović, J.B. Searle, N. Walden, A.M. Westram, R. Faria, Cold Spring Harbor Perspectives in Biology 15 (2023).
2023 |Published| Journal Article | IST-REx-ID: 14613 |
The scorpionfly (Panorpa cognata) genome highlights conserved and derived features of the peculiar dipteran X chromosome
C. Lasne, M.N. Elkrewi, M.A. Toups, L.A. Layana Franco, A. Macon, B. Vicoso, Molecular Biology and Evolution 40 (2023).
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C. Lasne, M.N. Elkrewi, M.A. Toups, L.A. Layana Franco, A. Macon, B. Vicoso, Molecular Biology and Evolution 40 (2023).
2023 | Research Data | IST-REx-ID: 14614 |
The scorpionfly (Panorpa cognata) genome highlights conserved and derived features of the peculiar dipteran X chromosome
C. Lasne, M.N. Elkrewi, (2023).
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C. Lasne, M.N. Elkrewi, (2023).
2022 |Published| Journal Article | IST-REx-ID: 10926 |
Very short mountings are enough for sperm transfer in Littorina saxatilis
S. Perini, R. Butlin, A.M. Westram, K. Johannesson, Journal of Molluscan Studies 88 (2022).
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S. Perini, R. Butlin, A.M. Westram, K. Johannesson, Journal of Molluscan Studies 88 (2022).
2022 |Published| Journal Article | IST-REx-ID: 11334 |
Parthenogenesis in Darevskia lizards: A rare outcome of common hybridization, not a common outcome of rare hybridization
S. Freitas, A.M. Westram, T. Schwander, M. Arakelyan, Ç. Ilgaz, Y. Kumlutas, D.J. Harris, M.A. Carretero, R.K. Butlin, Evolution 76 (2022) 899–914.
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S. Freitas, A.M. Westram, T. Schwander, M. Arakelyan, Ç. Ilgaz, Y. Kumlutas, D.J. Harris, M.A. Carretero, R.K. Butlin, Evolution 76 (2022) 899–914.
2022 |Published| Journal Article | IST-REx-ID: 11546 |
Inversions and parallel evolution
A.M. Westram, R. Faria, K. Johannesson, R. Butlin, N.H. Barton, Philosophical Transactions of the Royal Society B: Biological Sciences 377 (2022).
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A.M. Westram, R. Faria, K. Johannesson, R. Butlin, N.H. Barton, Philosophical Transactions of the Royal Society B: Biological Sciences 377 (2022).
2022 |Published| Journal Article | IST-REx-ID: 11703 |
Dioecy and chromosomal sex determination are maintained through allopolyploid speciation in the plant genus Mercurialis
M.A. Toups, B. Vicoso, J.R. Pannell, PLoS Genetics 18 (2022).
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M.A. Toups, B. Vicoso, J.R. Pannell, PLoS Genetics 18 (2022).
2022 |Published| Journal Article | IST-REx-ID: 10767 |
Novel patterns of expression and recruitment of new genes on the t-haplotype, a mouse selfish chromosome
R.K. Kelemen, M.N. Elkrewi, A.K. Lindholm, B. Vicoso, Proceedings of the Royal Society B: Biological Sciences 289 (2022) 20211985.
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R.K. Kelemen, M.N. Elkrewi, A.K. Lindholm, B. Vicoso, Proceedings of the Royal Society B: Biological Sciences 289 (2022) 20211985.
2022 |Published| Journal Article | IST-REx-ID: 12248 |
ZW sex-chromosome evolution and contagious parthenogenesis in Artemia brine shrimp
M.N. Elkrewi, U. Khauratovich, M.A. Toups, V.K. Bett, A. Mrnjavac, A. Macon, C. Fraisse, L. Sax, A.K. Huylmans, F. Hontoria, B. Vicoso, Genetics 222 (2022).
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M.N. Elkrewi, U. Khauratovich, M.A. Toups, V.K. Bett, A. Mrnjavac, A. Macon, C. Fraisse, L. Sax, A.K. Huylmans, F. Hontoria, B. Vicoso, Genetics 222 (2022).
2022 | Research Data | IST-REx-ID: 11653 |
Data from Elkrewi, Khauratovich, Toups et al. 2022, "ZW sex-chromosome evolution and contagious parthenogenesis in Artemia brine shrimp"
M.N. Elkrewi, (2022).
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M.N. Elkrewi, (2022).
2021 |Published| Journal Article | IST-REx-ID: 8708 |
How do species barriers decay? Concordance and local introgression in mosaic hybrid zones of mussels
A. Simon, C. Fraisse, T. El Ayari, C. Liautard‐Haag, P. Strelkov, J.J. Welch, N. Bierne, Journal of Evolutionary Biology 34 (2021) 208–223.
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A. Simon, C. Fraisse, T. El Ayari, C. Liautard‐Haag, P. Strelkov, J.J. Welch, N. Bierne, Journal of Evolutionary Biology 34 (2021) 208–223.
2021 |Published| Journal Article | IST-REx-ID: 9908 |
Diversity of modes of reproduction and sex determination systems in invertebrates, and the putative contribution of genetic conflict
M.A.L. Picard, B. Vicoso, S. Bertrand, H. Escriva, Genes 12 (2021).
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M.A.L. Picard, B. Vicoso, S. Bertrand, H. Escriva, Genes 12 (2021).
2021 |Published| Journal Article | IST-REx-ID: 10167 |
Schistosome W-Linked genes inform temporal dynamics of sex chromosome evolution and suggest candidate for sex determination
M.N. Elkrewi, M.A. Moldovan, M.A.L. Picard, B. Vicoso, Molecular Biology and Evolution (2021).
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M.N. Elkrewi, M.A. Moldovan, M.A.L. Picard, B. Vicoso, Molecular Biology and Evolution (2021).
2021 |Published| Journal Article | IST-REx-ID: 10838 |
Using replicate hybrid zones to understand the genomic basis of adaptive divergence
A.M. Westram, R. Faria, K. Johannesson, R. Butlin, Molecular Ecology 30 (2021) 3797–3814.
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A.M. Westram, R. Faria, K. Johannesson, R. Butlin, Molecular Ecology 30 (2021) 3797–3814.
2021 |Published| Journal Article | IST-REx-ID: 10166 |
Transitions to asexuality and evolution of gene expression in Artemia brine shrimp
A.K. Huylmans, A. Macon, F. Hontoria, B. Vicoso, Proceedings of the Royal Society B: Biological Sciences 288 (2021).
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A.K. Huylmans, A. Macon, F. Hontoria, B. Vicoso, Proceedings of the Royal Society B: Biological Sciences 288 (2021).
2021 | Research Data | IST-REx-ID: 9949 |
Data from Hyulmans et al 2021, "Transitions to asexuality and evolution of gene expression in Artemia brine shrimp"
B. Vicoso, (2021).
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B. Vicoso, (2021).
2020 | Research Data Reference | IST-REx-ID: 9799 |
Simulation code for Fig S1 from the distribution of epistasis on simple fitness landscapes
C. Fraisse, J.J. Welch, (2020).
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C. Fraisse, J.J. Welch, (2020).
2020 | Research Data Reference | IST-REx-ID: 9798 |
Simulation code for Fig S2 from the distribution of epistasis on simple fitness landscapes
C. Fraisse, J.J. Welch, (2020).
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C. Fraisse, J.J. Welch, (2020).
2020 |Published| Journal Article | IST-REx-ID: 8099 |
Disagreement in FST estimators: A case study from sex chromosomes
W.J. Gammerdinger, M.A. Toups, B. Vicoso, Molecular Ecology Resources 20 (2020) 1517–1525.
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W.J. Gammerdinger, M.A. Toups, B. Vicoso, Molecular Ecology Resources 20 (2020) 1517–1525.
2019 |Published| Journal Article | IST-REx-ID: 6467 |
The distribution of epistasis on simple fitness landscapes
C. Fraisse, J.J. Welch, Biology Letters 15 (2019).
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C. Fraisse, J.J. Welch, Biology Letters 15 (2019).
2019 |Published| Journal Article | IST-REx-ID: 6658 |
Haploid selection drives new gene male germline expression
J. Raices, P. Otto, M. Vibranovski, Genome Research 29 (2019) 1115–1122.
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J. Raices, P. Otto, M. Vibranovski, Genome Research 29 (2019) 1115–1122.
2019 |Published| Journal Article | IST-REx-ID: 6710 |
Sexual dimorphism and rapid turnover in gene expression in pre-reproductive seedlings of a dioecious herb
G. Cossard, M.A. Toups, J. Pannell, Annals of Botany 123 (2019) 1119–1131.
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G. Cossard, M.A. Toups, J. Pannell, Annals of Botany 123 (2019) 1119–1131.
2019 |Published| Journal Article | IST-REx-ID: 6755 |
Dosage compensation throughout the Schistosoma mansoni lifecycle: Specific chromatin landscape of the Z chromosome
M.A.L. Picard, B. Vicoso, D. Roquis, I. Bulla, R.C. Augusto, N. Arancibia, C. Grunau, J. Boissier, C. Cosseau, Genome Biology and Evolution 11 (2019) 1909–1922.
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M.A.L. Picard, B. Vicoso, D. Roquis, I. Bulla, R.C. Augusto, N. Arancibia, C. Grunau, J. Boissier, C. Cosseau, Genome Biology and Evolution 11 (2019) 1909–1922.
2019 |Published| Journal Article | IST-REx-ID: 6821 |
Diurnal variation in opsin expression and common housekeeping genes necessitates comprehensive normalization methods for quantitative real-time PCR analyses
M.R. Yourick, B.A. Sandkam, W.J. Gammerdinger, D. Escobar-Camacho, S.P. Nandamuri, F.E. Clark, B. Joyce, M.A. Conte, T.D. Kocher, K.L. Carleton, Molecular Ecology Resources 19 (2019) 1447–1460.
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M.R. Yourick, B.A. Sandkam, W.J. Gammerdinger, D. Escobar-Camacho, S.P. Nandamuri, F.E. Clark, B. Joyce, M.A. Conte, T.D. Kocher, K.L. Carleton, Molecular Ecology Resources 19 (2019) 1447–1460.
2019 |Published| Journal Article | IST-REx-ID: 6831 |
Variation in sexual dimorphism in a wind-pollinated plant: The influence of geographical context and life-cycle dynamics
G. Puixeu Sala, M. Pickup, D. Field, S.C.H. Barrett, New Phytologist 224 (2019) 1108–1120.
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G. Puixeu Sala, M. Pickup, D. Field, S.C.H. Barrett, New Phytologist 224 (2019) 1108–1120.
2019 | Research Data Reference | IST-REx-ID: 9803 |
Data from: Variation in sexual dimorphism in a wind-pollinated plant: the influence of geographical context and life-cycle dynamics
G. Puixeu Sala, M. Pickup, D. Field, S.C.H. Barrett, (2019).
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G. Puixeu Sala, M. Pickup, D. Field, S.C.H. Barrett, (2019).
2019 |Published| Journal Article | IST-REx-ID: 6983 |
Clustering of activated CD8 T cells around Malaria-infected hepatocytes is rapid and is driven by antigen-specific cells
R.K. Kelemen, H. Rajakaruna, I. Cockburn, V. Ganusov, Frontiers in Immunology 10 (2019).
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R.K. Kelemen, H. Rajakaruna, I. Cockburn, V. Ganusov, Frontiers in Immunology 10 (2019).
2019 |Published| Journal Article | IST-REx-ID: 7146
Molecular and evolutionary dynamics of animal sex-chromosome turnover
B. Vicoso, Nature Ecology & Evolution 3 (2019) 1632–1641.
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B. Vicoso, Nature Ecology & Evolution 3 (2019) 1632–1641.
2019 |Published| Journal Article | IST-REx-ID: 7421
A reciprocal translocation radically reshapes sex‐linked inheritance in the common frog
M.A. Toups, N. Rodrigues, N. Perrin, M. Kirkpatrick, Molecular Ecology 28 (2019) 1877–1889.
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M.A. Toups, N. Rodrigues, N. Perrin, M. Kirkpatrick, Molecular Ecology 28 (2019) 1877–1889.
2019 |Published| Journal Article | IST-REx-ID: 7400 |
Early sex-chromosome evolution in the diploid dioecious plant Mercurialis annua
P. Veltsos, K.E. Ridout, M.A. Toups, S.C. González-Martínez, A. Muyle, O. Emery, P. Rastas, V. Hudzieczek, R. Hobza, B. Vyskot, G.A.B. Marais, D.A. Filatov, J.R. Pannell, Genetics 212 (2019) 815–835.
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P. Veltsos, K.E. Ridout, M.A. Toups, S.C. González-Martínez, A. Muyle, O. Emery, P. Rastas, V. Hudzieczek, R. Hobza, B. Vyskot, G.A.B. Marais, D.A. Filatov, J.R. Pannell, Genetics 212 (2019) 815–835.
2019 |Published| Journal Article | IST-REx-ID: 6621 |
On the power to detect rare recombination events
A.E. Wright, I. Darolti, N.I. Bloch, V. Oostra, B.A. Sandkam, S.D. Buechel, N. Kolm, F. Breden, B. Vicoso, J.E. Mank, Proceedings of the National Academy of Sciences of the United States of America 116 (2019) 12607–12608.
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A.E. Wright, I. Darolti, N.I. Bloch, V. Oostra, B.A. Sandkam, S.D. Buechel, N. Kolm, F. Breden, B. Vicoso, J.E. Mank, Proceedings of the National Academy of Sciences of the United States of America 116 (2019) 12607–12608.
2019 |Published| Journal Article | IST-REx-ID: 6418 |
Sex-biased gene expression and dosage compensation on the Artemia franciscana Z-chromosome
A.K. Huylmans, M.A. Toups, A. Macon, W.J. Gammerdinger, B. Vicoso, Genome Biology and Evolution 11 (2019) 1033–1044.
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A.K. Huylmans, M.A. Toups, A. Macon, W.J. Gammerdinger, B. Vicoso, Genome Biology and Evolution 11 (2019) 1033–1044.
2019 | Research Data | IST-REx-ID: 6060 |
Supplementary data for "Sex-biased gene expression and dosage compensation on the Artemia franciscana Z-chromosome" (Huylman, Toups et al., 2019).
B. Vicoso, (2019).
[Published Version]
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B. Vicoso, (2019).
2019 |Published| Journal Article | IST-REx-ID: 6089 |
Pleiotropy modulates the efficacy of selection in drosophila melanogaster
C. Fraisse, G. Puixeu Sala, B. Vicoso, Molecular Biology and Evolution 36 (2019) 500–515.
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C. Fraisse, G. Puixeu Sala, B. Vicoso, Molecular Biology and Evolution 36 (2019) 500–515.