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4742 Publications

2015 | Journal Article | IST-REx-ID: 1683
Gaining mass: The structure of respiratory complex I-from bacterial towards mitochondrial versions
J.A. Letts, L.A. Sazanov, Current Opinion in Structural Biology 33 (2015) 135–145.
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2015 | Journal Article | IST-REx-ID: 1686
Fragmented communication between immune cells: Neutrophils blaze a trail with migratory cues for T cells to follow to sites of infection
E. Kiermaier, M.K. Sixt, Science 349 (2015) 1055–1056.
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2015 | Conference Paper | IST-REx-ID: 1692
Eliminating spurious transitions in reachability with support functions
G. Frehse, S. Bogomolov, M. Greitschus, T. Strump, A. Podelski, in:, Proceedings of the 18th International Conference on Hybrid Systems: Computation and Control, ACM, 2015, pp. 149–158.
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2015 | Journal Article | IST-REx-ID: 1693 | OA
Quantum interference effects in laser spectroscopy of muonic hydrogen, deuterium, and helium-3
P. Amaro, B. Franke, J. Krauth, M. Diepold, F. Fratini, L. Safari, J. Machado, A. Antognini, F. Kottmann, P. Indelicato, R. Pohl, J. Santos, Physical Review A 92 (2015).
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2015 | Conference Paper | IST-REx-ID: 1690
HYST: A source transformation and translation tool for hybrid automaton models
S. Bak, S. Bogomolov, T. Johnson, in:, Springer, 2015, pp. 128–133.
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2015 | Conference Paper | IST-REx-ID: 1691
Temporal logic motion planning using POMDPs with parity objectives: Case study paper
M. Svoreňová, M. Chmelik, K. Leahy, H. Eniser, K. Chatterjee, I. Cěrná, C. Belta, in:, Proceedings of the 18th International Conference on Hybrid Systems: Computation and Control, ACM, 2015, pp. 233–238.
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2015 | Journal Article | IST-REx-ID: 1694
Quantitative temporal simulation and refinement distances for timed systems
K. Chatterjee, V. Prabhu, IEEE Transactions on Automatic Control 60 (2015) 2291–2306.
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2015 | Journal Article | IST-REx-ID: 1695 | OA
Evaluation techniques for Gutzwiller wave functions in finite dimensions
J. Kaczmarczyk, T. Schickling, J. Bünemann, Physica Status Solidi (B): Basic Solid State Physics 252 (2015) 2059–2071.
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2015 | Journal Article | IST-REx-ID: 1697 | OA
High accuracy decoding of dynamical motion from a large retinal population
O. Marre, V. Botella Soler, K. Simmons, T. Mora, G. Tkačik, M. Berry, PLoS Computational Biology 11 (2015).
[Published Version] View | Files available | DOI
 
2015 | Journal Article | IST-REx-ID: 1699 | OA
Adaptive gene introgression after secondary contact
H. Uecker, D. Setter, J. Hermisson, Journal of Mathematical Biology 70 (2015) 1523–1580.
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2015 | Journal Article | IST-REx-ID: 1696 | OA
Gutzwiller wave function solution for Anderson lattice model: Emerging universal regimes of heavy quasiparticle states
M. Wysokiński, J. Kaczmarczyk, J. Spałek, Physical Review B 92 (2015).
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2015 | Journal Article | IST-REx-ID: 1701 | OA
Thermodynamics and signatures of criticality in a network of neurons
G. Tkačik, T. Mora, O. Marre, D. Amodei, S. Palmer, M. Berry Ii, W. Bialek, PNAS 112 (2015) 11508–11513.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
2015 | Journal Article | IST-REx-ID: 1698 | OA
The complexity of multi-mean-payoff and multi-energy games
Y. Velner, K. Chatterjee, L. Doyen, T.A. Henzinger, A. Rabinovich, J. Raskin, Information and Computation 241 (2015) 177–196.
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2015 | Journal Article | IST-REx-ID: 1700 | OA
Ultralong-range order in the Fermi-Hubbard model with long-range interactions
E. Van Loon, M. Katsnelson, M. Lemeshko, Physical Review B 92 (2015).
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2015 | Journal Article | IST-REx-ID: 1704 | OA
Note on a family of monotone quantum relative entropies
A. Deuchert, C. Hainzl, R. Seiringer, Letters in Mathematical Physics 105 (2015) 1449–1466.
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2015 | Journal Article | IST-REx-ID: 1703
An evaluation of the genetic structure of seed sources and the maintenance of genetic diversity during establishment of two yellow box (Eucalyptus melliodora) seed-production areas
L. Broadhurst, G. Fifield, B. Vanzella, M. Pickup, Australian Journal of Botany 63 (2015) 455–466.
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2015 | Conference Paper | IST-REx-ID: 1706 | OA
Multi-task and lifelong learning of kernels
A. Pentina, S. Ben David, in:, Springer, 2015, pp. 194–208.
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2015 | Journal Article | IST-REx-ID: 1712 | OA
Drosophila immune cell migration and adhesion during embryonic development and larval immune responses
A. Ratheesh, V. Belyaeva, D.E. Siekhaus, Current Opinion in Cell Biology 36 (2015) 71–79.
[Published Version] View | Files available | DOI
 
2015 | Journal Article | IST-REx-ID: 1710 | OA
Minimal resistance of curves under the single impact assumption
A. Akopyan, A. Plakhov, Society for Industrial and Applied Mathematics 47 (2015) 2754–2769.
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2015 | Journal Article | IST-REx-ID: 1730 | OA
Discrete systolic inequalities and decompositions of triangulated surfaces
É. Colin De Verdière, A. Hubard, A.N. de Mesmay, Discrete & Computational Geometry 53 (2015) 587–620.
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2015 | Journal Article | IST-REx-ID: 1735 | OA
A dimension-reduced pressure solver for liquid simulations
R. Ando, N. Thürey, C. Wojtan, Computer Graphics Forum 34 (2015) 473–480.
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2015 | Journal Article | IST-REx-ID: 1734
Recent advances in facial appearance capture
O. Klehm, F. Rousselle, M. Papas, D. Bradley, C. Hery, B. Bickel, W. Jarosz, T. Beeler, Computer Graphics Forum 34 (2015) 709–733.
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2015 | Journal Article | IST-REx-ID: 1789 | OA
Loss-of-function variants of SETD5 cause intellectual disability and the core phenotype of microdeletion 3p25.3 syndrome
Kuechler A, Zink A, Wieland T, Lüdecke H, Cremer K, Salviati L, Magini P, Najafi K, Zweier C, Czeschik J, Aretz S, Endele S, Tamburrino F, Pinato C, Clementi M, Gundlach J, Maylahn C, Mazzanti L, Wohlleber E, Schwarzmayr T, Kariminejad R, Schlessinger A, Wieczorek D, Strom T, Novarino G, Engels H. 2015. Loss-of-function variants of SETD5 cause intellectual disability and the core phenotype of microdeletion 3p25.3 syndrome. European Journal of Human Genetics. 23(6), 753–760.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
2015 | Journal Article | IST-REx-ID: 1804 | OA
Transition to turbulence in Taylor-Couette ferrofluidic flow
S. Altmeyer, Y. Do, Y. Lai, Scientific Reports 5 (2015).
[Published Version] View | Files available | DOI
 
2015 | Journal Article | IST-REx-ID: 1807 | OA
Sharp interface limit for two components Bose-Einstein condensates
M. Goldman, J. Royo-Letelier, ESAIM - Control, Optimisation and Calculus of Variations 21 (2015) 603–624.
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2015 | Journal Article | IST-REx-ID: 1810 | OA
Antimicrobial interactions: Mechanisms and implications for drug discovery and resistance evolution
M.T. Bollenbach, Current Opinion in Microbiology 27 (2015) 1–9.
[Published Version] View | Files available | DOI
 
2015 | Journal Article | IST-REx-ID: 1812 | OA
Exotic roton excitations in quadrupolar Bose–Einstein condensates
M. Lahrz, M. Lemeshko, L. Mathey, New Journal of Physics 17 (2015).
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2015 | Journal Article | IST-REx-ID: 1811 | OA
Analytical evaluation of atomic form factors: Application to Rayleigh scattering
L. Safari, J. Santos, P. Amaro, K. Jänkälä, F. Fratini, Journal of Mathematical Physics 56 (2015).
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2015 | Journal Article | IST-REx-ID: 1813 | OA
Rotation of quantum impurities in the presence of a many-body environment
R. Schmidt, M. Lemeshko, Physical Review Letters 114 (2015).
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2015 | Journal Article | IST-REx-ID: 1808
Guest editors' introduction to special issue on computational methods in systems biology
A. Gupta, T.A. Henzinger, ACM Transactions on Modeling and Computer Simulation 25 (2015).
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2015 | Journal Article | IST-REx-ID: 1817 | OA
YAP is essential for tissue tension to ensure vertebrate 3D body shape
Porazinski S, Wang H, Asaoka Y, Behrndt M, Miyamoto T, Morita H, Hata S, Sasaki T, Krens G, Osada Y, Asaka S, Momoi A, Linton S, Miesfeld J, Link B, Senga T, Castillo Morales A, Urrutia A, Shimizu N, Nagase H, Matsuura S, Bagby S, Kondoh H, Nishina H, Heisenberg C-PJ, Furutani Seiki M. 2015. YAP is essential for tissue tension to ensure vertebrate 3D body shape. Nature. 521(7551), 217–221.
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2015 | Conference Paper | IST-REx-ID: 1820 | OA
Optimal cost almost-sure reachability in POMDPs
K. Chatterjee, M. Chmelik, R. Gupta, A. Kanodia, in:, Proceedings of the Twenty-Ninth AAAI Conference on Artificial Intelligence , AAAI Press, 2015, pp. 3496–3502.
[Preprint] View | Files available | Download Preprint (ext.) | arXiv
 
2015 | Journal Article | IST-REx-ID: 1814 | OA
Water wave animation via wavefront parameter interpolation
S. Jeschke, C. Wojtan, ACM Transactions on Graphics 34 (2015).
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2015 | Journal Article | IST-REx-ID: 1818 | OA
Limits to adaptation along environmental gradients
J. Polechova, N.H. Barton, PNAS 112 (2015) 6401–6406.
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2015 | Journal Article | IST-REx-ID: 1819
Osmotic stress modulates the balance between exocytosis and clathrin mediated endocytosis in Arabidopsis thaliana
M. Zwiewka, T. Nodzyński, S. Robert, S. Vanneste, J. Friml, Molecular Plant 8 (2015) 1175–1187.
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2015 | Journal Article | IST-REx-ID: 1823 | OA
Systematic discovery of drug interaction mechanisms
G. Chevereau, M.T. Bollenbach, Molecular Systems Biology 11 (2015).
[Published Version] View | Files available | DOI
 
2015 | Journal Article | IST-REx-ID: 1824 | OA
Evolutionary games of condensates in coupled birth-death processes
J. Knebel, M. Weber, T.H. Krüger, E. Frey, Nature Communications 6 (2015).
[Published Version] View | Files available | DOI
 
2015 | Journal Article | IST-REx-ID: 1831 | OA
Sociality and health: Impacts of sociality on disease susceptibility and transmission in animal and human societies
P. Kappeler, S. Cremer, C. Nunn, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 370 (2015).
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2015 | Journal Article | IST-REx-ID: 1828 | OA
Invariant measures of genetic recombination process
A. Akopyan, S. Pirogov, A. Rybko, Journal of Statistical Physics 160 (2015) 163–167.
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2015 | Conference Paper | IST-REx-ID: 1836
Segment abstraction for worst-case execution time analysis
P. Cerny, T.A. Henzinger, L. Kovács, A. Radhakrishna, J. Zwirchmayr, 9032 (2015) 105–131.
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2015 | Conference Paper | IST-REx-ID: 1838 | OA
Assume-guarantee synthesis for concurrent reactive programs with partial information
R. Bloem, K. Chatterjee, S. Jacobs, R. Könighofer, in:, Springer, 2015, pp. 517–532.
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2015 | Conference Paper | IST-REx-ID: 1839 | OA
Multigain: A controller synthesis tool for MDPs with multiple mean-payoff objectives
T. Brázdil, K. Chatterjee, V. Forejt, A. Kučera, 9035 (2015) 181–187.
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2015 | Journal Article | IST-REx-ID: 1837 | OA
Subcritical versus supercritical transition to turbulence in curved pipes
J. Kühnen, P. Braunshier, M. Schwegel, H. Kuhlmann, B. Hof, Journal of Fluid Mechanics 770 (2015).
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 
2015 | Journal Article | IST-REx-ID: 1848 | OA
FAM96A is a novel pro-apoptotic tumor suppressor in gastrointestinal stromal tumors
Schwamb B, Pick R, Fernández S, Völp K, Heering J, Dötsch V, Bösser S, Jung J, Beinoravičiute Kellner R, Wesely J, Zörnig I, Hammerschmidt M, Nowak M, Penzel R, Zatloukal K, Joos S, Rieker R, Agaimy A, Söder S, Reid Lombardo K, Kendrick M, Bardsley M, Hayashi Y, Asuzu D, Syed S, Ördög T, Zörnig M. 2015. FAM96A is a novel pro-apoptotic tumor suppressor in gastrointestinal stromal tumors. International Journal of Cancer. 137(6), 1318–1329.
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2015 | Journal Article | IST-REx-ID: 1846 | OA
Refinement checking on parametric modal transition systems
N. Beneš, J. Kretinsky, K. Larsen, M. Möller, S. Sickert, J. Srba, Acta Informatica 52 (2015) 269–297.
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2015 | Journal Article | IST-REx-ID: 1845 | OA
Excitement about inhibitory presynaptic terminals
D.H. Vandael, C. Espinoza Martinez, P.M. Jonas, Neuron 85 (2015) 1149–1151.
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2015 | Journal Article | IST-REx-ID: 1840 | OA
Optimal Kullback-Leibler aggregation via information bottleneck
B. Geiger, T. Petrov, G. Kubin, H. Koeppl, IEEE Transactions on Automatic Control 60 (2015) 1010–1022.
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2015 | Journal Article | IST-REx-ID: 1841 | OA
A new look at reweighted message passing
V. Kolmogorov, IEEE Transactions on Pattern Analysis and Machine Intelligence 37 (2015) 919–930.
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2015 | Journal Article | IST-REx-ID: 1849
Calcium is an organizer of cell polarity in plants
E. Himschoot, T. Beeckman, J. Friml, S. Vanneste, Biochimica et Biophysica Acta - Molecular Cell Research 1853 (2015) 2168–2172.
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2015 | Journal Article | IST-REx-ID: 1847
ABP1: Finally docking
P. Grones, J. Friml, Molecular Plant 8 (2015) 356–358.
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